Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

9662871 .. 9663477

Gene Structure 607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22848

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTGACTAAGAGCAAGTGCACCCGTAGTCAAGAAAAGGCAAAGTCGAGAAGTCAAGAATTCGACCAGTCAAGTTACTATTCACTGCCACTGGACATAGCTCCTCCAGTACAGCGACACCTGCAACACCAACCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTATCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCCATAAACTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTAGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGTGCGGTGGCGGTGGCGAAGGATGGGACCGTCTACACCGGGTCGGCGAACCGTCGAAGCCGGGTGTGGGGGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCATCCTTCGCGTCTCTCTCTGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

166

Amino Acids

18.74

Weight (kDa)

10.06

Isoelectric Point (pI)

73.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	90 - 150	3.4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	483
AciI	CCGC	6 cut(s)	286, 301, 344, 350, 416, 470
AcoI	YGGCCR	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	2 cut(s)	205, 333
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	251, 406, 439
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	2 cut(s)	101, 188
AluI	AGCT	2 cut(s)	101, 188
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	227, 406, 490
Alw44I	GTGCAC	1 cut(s)	19
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	494
ApaLI	GTGCAC	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	161, 303
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	325, 432
AspS9I	GGNCC	1 cut(s)	366
AsuC2I	CCSGG	2 cut(s)	379, 401
AsuHPI	GGTGA	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	366
BaeGI	GKGCMC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	148, 290
BccI	CCATC	2 cut(s)	173, 356
BceAI	ACGGC	2 cut(s)	320, 481
BcnI	CCSGG	2 cut(s)	379, 401
BcoDI	GTCTC	3 cut(s)	227, 406, 490
BfoI	RGCGCY	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	129
BisI	GCNGC	2 cut(s)	162, 304
BlsI	GCNGC	2 cut(s)	163, 305
Bme1390I	CCNGG	2 cut(s)	379, 401
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	256, 367
BmrFI	CCNGG	2 cut(s)	379, 401
BpmI	CTGGAG	3 cut(s)	90, 138, 473
BpuMI	CCSGG	2 cut(s)	379, 401
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	205, 333
BsaI	GGTCTC	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 406, 439
Bse1I	ACTGG	3 cut(s)	67, 96, 107
BseGI	GGATG	2 cut(s)	367, 474
BseLI	CCNNNNNNNGG	3 cut(s)	251, 406, 439
BseNI	ACTGG	3 cut(s)	67, 96, 107
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	148, 290
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	378, 400
BslFI	GGGAC	2 cut(s)	302, 379
BslI	CCNNNNNNNGG	3 cut(s)	251, 406, 439
BsmAI	GTCTC	3 cut(s)	227, 406, 490
BsmBI	CGTCTC	2 cut(s)	227, 490
BsmFI	GGGAC	2 cut(s)	302, 379
BsnI	GGCC	1 cut(s)	496
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	23
BspACI	CCGC	6 cut(s)	286, 301, 344, 350, 416, 470
BspANI	GGCC	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	256, 367
BspMI	ACCTGC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	406
BsrI	ACTGG	3 cut(s)	67, 96, 107
BssNI	GRCGYC	2 cut(s)	205, 333
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	250, 370, 392
BstACI	GRCGYC	2 cut(s)	205, 333
BstBAI	YACGTR	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	367, 474
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	2 cut(s)	325, 432
BstMAI	GTCTC	3 cut(s)	227, 406, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 341, 457
BstSCI	CCNGG	2 cut(s)	377, 399
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	148, 290
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	367, 474
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	83, 89
BveI	ACCTGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	2 cut(s)	325, 432
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	5 cut(s)	167, 213, 341, 457, 472
Csp6I	GTAC	1 cut(s)	110
CviJI	RGCY	4 cut(s)	101, 188, 399, 496
CviKI_1	RGCY	4 cut(s)	101, 188, 399, 496
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	494
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	59
Esp3I	CGTCTC	2 cut(s)	227, 490
FaiI	YATR	2 cut(s)	98, 260
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	2 cut(s)	302, 379
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	162, 304
FokI	GGATG	2 cut(s)	374, 461
Fsp4HI	GCNGC	2 cut(s)	162, 304
GlaI	GCGC	2 cut(s)	324, 431
GluI	GCNGC	2 cut(s)	162, 304
GsuI	CTGGAG	3 cut(s)	90, 138, 473
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	2 cut(s)	378, 400
HgaI	GACGC	5 cut(s)	167, 213, 341, 457, 472
HhaI	GCGC	2 cut(s)	325, 432
Hin1I	GRCGYC	2 cut(s)	205, 333
Hin6I	GCGC	2 cut(s)	323, 430
HinP1I	GCGC	2 cut(s)	323, 430
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	290, 311
HpaII	CCGG	2 cut(s)	378, 400
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	3 cut(s)	6, 21, 373
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	5 cut(s)	32, 48, 56, 155, 268
Hpy8I	GTNNAC	3 cut(s)	6, 21, 373
Hpy99I	CGWCG	3 cut(s)	207, 396, 451
HpyAV	CCTTC	3 cut(s)	189, 352, 488
HpyCH4III	ACNGT	3 cut(s)	250, 370, 392
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	2 cut(s)	21, 124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 341, 457
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	2 cut(s)	205, 333
HspAI	GCGC	2 cut(s)	323, 430
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	148, 290
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	185, 289
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	284, 320
MmeI	TCCRAC	3 cut(s)	166, 221, 318
MnlI	CCTC	9 cut(s)	114, 144, 156, 162, 185, 225, 240, 308, 322
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	2 cut(s)	378, 400
MspR9I	CCNGG	2 cut(s)	379, 401
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	121, 341, 457
NciI	CCSGG	2 cut(s)	379, 401
NlaIV	GGNNCC	2 cut(s)	256, 367
PaqCI	CACCTGC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	163, 305
PleI	GAGTC	2 cut(s)	284, 319
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	2 cut(s)	284, 319
Ppu21I	YACGTR	1 cut(s)	436
PspCI	CACGTG	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	256, 367
PspPI	GGNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SatI	GCNGC	2 cut(s)	162, 304
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	2 cut(s)	284, 320
ScrFI	CCNGG	2 cut(s)	379, 401
SduI	GDGCHC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	366
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	6 cut(s)	286, 301, 344, 350, 416, 470
StyD4I	CCNGG	2 cut(s)	377, 399
TaaI	ACNGT	3 cut(s)	250, 370, 392
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	4 cut(s)	47, 63, 202, 394
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	109
TscAI	CASTG	2 cut(s)	90, 96
TseI	GCWGC	2 cut(s)	161, 303
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	2 cut(s)	209, 304
TspRI	CASTG	2 cut(s)	90, 96
Van91I	CCANNNNNTGG	1 cut(s)	439
VneI	GTGCAC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.