Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Reverse (-)

243306 .. 249675

Gene Structure 6370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAATCATAGTTTACTAAAGTATATTCATAGAAGCTCCTCCAGTACTGCGACACCTGCAACCCAACCTCCATTCCAACCTCTCCCTCCAGACGCTGCCATCTGTCCCCTCCCTTCAGAAGCTCATCTTCCAACTCGACGCCCCAAACCTCTCCGTCTCTCACCTCTGCTTCATCTCCCAACAGTCGGTGCCATAAACTTCCAGACCTTGAAGATTTGGCGGGACTCCAACCTCCGCTGCGTAGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGTGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGAAGCCGGGTGTGGGGGAGACCGCAAGACGAGAAGCGCCACGTGTTGGTGGCGACGCTGGAGAAGCACAAGTCGGCGGTCGTCCTTCGCGTCTCTCTCTGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

144

Amino Acids

15.95

Weight (kDa)

10.17

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	68 - 128	2.5e-07	WDR5 beta-propeller domain
WD40_Prp19	PF24814	68 - 137	7.9e-07	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	417
AciI	CCGC	7 cut(s)	220, 235, 278, 284, 320, 350, 404
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	99
AcvI	CACGTG	1 cut(s)	370
AcyI	GRCGYC	2 cut(s)	139, 267
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	3 cut(s)	185, 340, 373
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	2 cut(s)	36, 122
AluI	AGCT	2 cut(s)	36, 122
Alw26I	GTCTC	3 cut(s)	161, 340, 424
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	95, 237
AspLEI	GCGC	2 cut(s)	259, 366
AspS9I	GGNCC	2 cut(s)	300, 322
AsuC2I	CCSGG	2 cut(s)	313, 335
AsuHPI	GGTGA	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	300, 322
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	82, 224
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	254, 415
BcnI	CCSGG	2 cut(s)	313, 335
BcoDI	GTCTC	3 cut(s)	161, 340, 424
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	96, 238
BlsI	GCNGC	2 cut(s)	97, 239
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	313, 335
Bme18I	GGWCC	2 cut(s)	300, 322
BmgT120I	GGNCC	2 cut(s)	300, 322
BmiI	GGNNCC	2 cut(s)	190, 301
BmrFI	CCNGG	2 cut(s)	313, 335
BpmI	CTGGAG	3 cut(s)	25, 72, 407
BpuMI	CCSGG	2 cut(s)	313, 335
BsaAI	YACGTR	1 cut(s)	370
BsaHI	GRCGYC	2 cut(s)	139, 267
BsaI	GGTCTC	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 340, 373
Bse1I	ACTGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	185, 340, 373
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	82, 224
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	312, 334
BslFI	GGGAC	3 cut(s)	90, 236, 313
BslI	CCNNNNNNNGG	3 cut(s)	185, 340, 373
BsmAI	GTCTC	3 cut(s)	161, 340, 424
BsmBI	CGTCTC	2 cut(s)	161, 424
BsmFI	GGGAC	3 cut(s)	90, 236, 313
BsnI	GGCC	1 cut(s)	430
Bso31I	GGTCTC	1 cut(s)	340
BspACI	CCGC	7 cut(s)	220, 235, 278, 284, 320, 350, 404
BspANI	GGCC	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	190, 301
BspMI	ACCTGC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	42
BssNI	GRCGYC	2 cut(s)	139, 267
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	184, 304, 326
BstACI	GRCGYC	2 cut(s)	139, 267
BstBAI	YACGTR	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	259, 366
BstMAI	GTCTC	3 cut(s)	161, 340, 424
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 275, 391
BstSCI	CCNGG	2 cut(s)	311, 333
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	82, 224
BsuRI	GGCC	1 cut(s)	430
BveI	ACCTGC	1 cut(s)	64
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	259, 366
Cfr13I	GGNCC	2 cut(s)	300, 322
CpoI	CGGWCCG	1 cut(s)	322
CseI	GACGC	5 cut(s)	101, 147, 275, 391, 406
Csp6I	GTAC	1 cut(s)	45
CspI	CGGWCCG	1 cut(s)	322
CviJI	RGCY	4 cut(s)	36, 122, 333, 430
CviKI_1	RGCY	4 cut(s)	36, 122, 333, 430
CviQI	GTAC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	300, 322
Eco57I	CTGAAG	1 cut(s)	99
Eco72I	CACGTG	1 cut(s)	370
Esp3I	CGTCTC	2 cut(s)	161, 424
FaiI	YATR	4 cut(s)	9, 24, 30, 194
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	3 cut(s)	90, 236, 313
FauI	CCCGC	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	96, 238
Fsp4HI	GCNGC	2 cut(s)	96, 238
GlaI	GCGC	2 cut(s)	258, 365
GluI	GCNGC	2 cut(s)	96, 238
GsuI	CTGGAG	3 cut(s)	25, 72, 407
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	2 cut(s)	312, 334
HgaI	GACGC	5 cut(s)	101, 147, 275, 391, 406
HhaI	GCGC	2 cut(s)	259, 366
Hin1I	GRCGYC	2 cut(s)	139, 267
Hin6I	GCGC	2 cut(s)	257, 364
HinP1I	GCGC	2 cut(s)	257, 364
HinfI	GANTC	3 cut(s)	4, 224, 245
HpaII	CCGG	2 cut(s)	312, 334
HphI	GGTGA	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	14, 307
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	89, 202
Hpy8I	GTNNAC	2 cut(s)	14, 307
Hpy99I	CGWCG	3 cut(s)	141, 330, 385
HpyAV	CCTTC	3 cut(s)	123, 286, 422
HpyCH4III	ACNGT	3 cut(s)	184, 304, 326
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 275, 391
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	2 cut(s)	139, 267
HspAI	GCGC	2 cut(s)	257, 364
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	55, 69, 102, 215, 325, 347, 371, 412
Lsp1109I	GCAGC	2 cut(s)	82, 224
MaeII	ACGT	1 cut(s)	369
MboII	GAAGA	2 cut(s)	119, 223
MlyI	GAGTC	2 cut(s)	218, 254
MmeI	TCCRAC	3 cut(s)	100, 155, 252
MnlI	CCTC	9 cut(s)	49, 78, 90, 96, 119, 159, 174, 242, 256
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	312, 334
MspR9I	CCNGG	2 cut(s)	313, 335
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	3 cut(s)	56, 275, 391
NciI	CCSGG	2 cut(s)	313, 335
NlaIV	GGNNCC	2 cut(s)	190, 301
PaqCI	CACCTGC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 414
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	97, 239
PleI	GAGTC	2 cut(s)	218, 253
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
PpsI	GAGTC	2 cut(s)	218, 253
Ppu21I	YACGTR	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	190, 301
PspPI	GGNCC	2 cut(s)	300, 322
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
Rsr2I	CGGWCCG	1 cut(s)	322
RsrII	CGGWCCG	1 cut(s)	322
SatI	GCNGC	2 cut(s)	96, 238
Sau96I	GGNCC	2 cut(s)	300, 322
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	218, 254
ScrFI	CCNGG	2 cut(s)	313, 335
SinI	GGWCC	2 cut(s)	300, 322
SsiI	CCGC	7 cut(s)	220, 235, 278, 284, 320, 350, 404
StyD4I	CCNGG	2 cut(s)	311, 333
TaaI	ACNGT	3 cut(s)	184, 304, 326
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	136, 328
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	95, 237
TspDTI	ATGAA	3 cut(s)	17, 17, 161
TspGWI	ACGGA	2 cut(s)	143, 238
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	300, 322
XmiI	GTMKAC	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.