Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014834

Physical Location & Seq

Genomic Coordinates Forward (+)

25068915 .. 25072376

Gene Structure 3462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGAGGCGATGGCGACGGGCCACGTGGGTTGTTGGCCGTCTTTATAAATTCGCCCCCACAAAAGTTTACTTCTGGGTCCGCCACTGGATATATGGAGGAGCAATCGACCATACGAAACTGTGTAGGTGGTTGGCCAACTCGTTCCCCTCGACCTTGAAGATTCGGCGGGACTCCAACCTCCGCTGCTTGGAGTCCGTCAAGGCGCACGAGGACGCCGTGAGAGCGGTGGCGGTGGCGAAGGACGGGACCGTCTACACCGGGTCGGCGGACCGTCGGATCCGGGTGTGGGTGAGACCGCAAGACGAGAAGCGCCACGTAGAATATCTAAATCAACAGTTGAATAATAGCTATTATTATAGGGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045159 GO:0046777 GO:0051301 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

123

Amino Acids

14.72

Weight (kDa)

10.39

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	47 - 98	7.4e-06	WDR5 beta-propeller domain
WD40	PF00400	62 - 97	1.7e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014834)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g07780 pycom12g13790 pycom15g04400
rosa_chinensis	RchiOBHm_Chr6g0254721
rosa_laevigata	RLG00000012597 RLG00000026348
rosa_multiflora	Rmu_sc0003880.1_g000037 Rmu_ssc0000116.1_g000020 Rmu_ssc0000357.1_g000003
rosa_roxburghii	Rroxscaffold_4G00311450
rosa_samantha	Rh2BG557500 Rh2DG003800 Rh3DG263600 Rh4BG141200 Rh5AG042400 Rh5DG042600 Rh6CG505700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AasI	GACNNNNNNGTC	1 cut(s)	251
AccBSI	CCGCTC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	7 cut(s)	82, 169, 184, 227, 233, 269, 299
AclWI	GGATC	2 cut(s)	274, 287
AcoI	YGGCCR	2 cut(s)	37, 135
AcsI	RAATTY	1 cut(s)	50
AcvI	CACGTG	1 cut(s)	27
AcyI	GRCGYC	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	190, 289
AgsI	TTSAA	2 cut(s)	160, 343
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	2 cut(s)	274, 287
AoxI	GGCC	3 cut(s)	21, 37, 135
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	208, 315
AspS9I	GGNCC	4 cut(s)	21, 79, 249, 271
AsuC2I	CCSGG	2 cut(s)	262, 284
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	3 cut(s)	79, 249, 271
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	279
BauI	CACGAG	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	6
BceAI	ACGGC	2 cut(s)	24, 203
BcnI	CCSGG	2 cut(s)	262, 284
BcoDI	GTCTC	1 cut(s)	289
BfoI	RGCGCY	1 cut(s)	316
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	262, 284
Bme18I	GGWCC	3 cut(s)	79, 249, 271
BmgT120I	GGNCC	4 cut(s)	21, 79, 249, 271
BmiI	GGNNCC	3 cut(s)	80, 250, 281
BmrFI	CCNGG	2 cut(s)	262, 284
BpuMI	CCSGG	2 cut(s)	262, 284
BsaAI	YACGTR	2 cut(s)	27, 319
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 289
Bse1I	ACTGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	190, 289
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	23, 39, 137
BsiSI	CCGG	2 cut(s)	261, 283
BslFI	GGGAC	2 cut(s)	185, 262
BslI	CCNNNNNNNGG	2 cut(s)	190, 289
BsmAI	GTCTC	1 cut(s)	289
BsmFI	GGGAC	2 cut(s)	185, 262
BsnI	GGCC	3 cut(s)	23, 39, 137
Bso31I	GGTCTC	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	7 cut(s)	82, 169, 184, 227, 233, 269, 299
BspANI	GGCC	3 cut(s)	23, 39, 137
BspLI	GGNNCC	3 cut(s)	80, 250, 281
BspPI	GGATC	2 cut(s)	274, 287
BspTNI	GGTCTC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	4 cut(s)	123, 253, 275, 339
BstACI	GRCGYC	1 cut(s)	216
BstBAI	YACGTR	2 cut(s)	27, 319
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	208, 315
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	260, 282
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	23, 39, 137
BtgZI	GCGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	85
CfoI	GCGC	2 cut(s)	208, 315
Cfr13I	GGNCC	4 cut(s)	21, 79, 249, 271
CpoI	CGGWCCG	1 cut(s)	271
CseI	GACGC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CspI	CGGWCCG	1 cut(s)	271
CviJI	RGCY	4 cut(s)	23, 39, 137, 351
CviKI_1	RGCY	4 cut(s)	23, 39, 137, 351
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	37, 135
EciI	GGCGGA	2 cut(s)	71, 284
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	79, 249, 271
Eco72I	CACGTG	1 cut(s)	27
FaiI	YATR	5 cut(s)	48, 94, 96, 114, 360
FaqI	GGGAC	2 cut(s)	185, 262
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
GlaI	GCGC	2 cut(s)	207, 314
GluI	GCNGC	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	3 cut(s)	23, 39, 137
HapII	CCGG	2 cut(s)	261, 283
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	208, 315
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	2 cut(s)	206, 313
HinP1I	GCGC	2 cut(s)	206, 313
HinfI	GANTC	3 cut(s)	163, 173, 194
HpaII	CCGG	2 cut(s)	261, 283
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	70, 256, 367
Hpy188I	TCNGA	1 cut(s)	279
Hpy8I	GTNNAC	3 cut(s)	70, 256, 367
Hpy99I	CGWCG	2 cut(s)	21, 279
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	4 cut(s)	123, 253, 275, 339
HpyCH4IV	ACGT	2 cut(s)	26, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpySE526I	ACGT	2 cut(s)	26, 318
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	2 cut(s)	206, 313
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	4 cut(s)	61, 73, 274, 296
Lsp1109I	GCAGC	1 cut(s)	173
MaeII	ACGT	2 cut(s)	26, 318
MalI	GATC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	2 cut(s)	167, 203
MmeI	TCCRAC	2 cut(s)	201, 257
MnlI	CCTC	4 cut(s)	92, 160, 191, 205
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	261, 283
MspR9I	CCNGG	2 cut(s)	262, 284
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	2 cut(s)	262, 284
NdeII	GATC	1 cut(s)	279
NlaIV	GGNNCC	3 cut(s)	80, 250, 281
PcsI	WCGNNNNNNNCGW	2 cut(s)	149, 216
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	167, 202
PmaCI	CACGTG	1 cut(s)	27
PmlI	CACGTG	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	167, 202
Ppu21I	YACGTR	2 cut(s)	27, 319
PsiI	TTATAA	1 cut(s)	48
PspCI	CACGTG	1 cut(s)	27
PspN4I	GGNNCC	3 cut(s)	80, 250, 281
PspPI	GGNCC	4 cut(s)	21, 79, 249, 271
PsuI	RGATCY	1 cut(s)	279
Rsr2I	CGGWCCG	1 cut(s)	271
RsrII	CGGWCCG	1 cut(s)	271
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	4 cut(s)	21, 79, 249, 271
SchI	GAGTC	2 cut(s)	167, 203
ScrFI	CCNGG	2 cut(s)	262, 284
SetI	ASST	6 cut(s)	29, 131, 158, 183, 321, 353
SinI	GGWCC	3 cut(s)	79, 249, 271
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	7 cut(s)	82, 169, 184, 227, 233, 269, 299
StyD4I	CCNGG	2 cut(s)	260, 282
TaaI	ACNGT	4 cut(s)	123, 253, 275, 339
TaiI	ACGT	2 cut(s)	29, 321
TaqI	TCGA	2 cut(s)	108, 152
TasI	AATT	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	79, 249, 271
XapI	RAATTY	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.