Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005089

Physical Location & Seq

Genomic Coordinates Forward (+)

13917829 .. 13918504

Gene Structure 676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGTCCTTCTTCTTCCTCGCACCCATGCCCAGCAACCTCTCCACTACCATGGAAGTGAAGCATCAGCTTTGCTACCTCACTCCGCCAAACCCCACTTGCTACACAGGGTGCGCACACCCGGAGCAAGGTGGCCTCCATCGACTTGGCCTCATCCCCCTCACCTCCGACCGCGCCATGAGCATGGCTTCTCACGTGACTGTGACGCCTGCGACGGCGACGGCCAGTGCGAGTTCTGCTCTGTCGAGTTCCACCATCCGCGTTTCCAGAGCTTCCGACGGCAAAGATCGGCACAGCAAGGTCTGGACTTCAAAAGGGTTGAGAGACCGGAGGGCCCGGTTGTCTGTAACCACCGCCATTCAGTTCTACGATCTCCAAGATCGGTTAAATTACGACCAGCCCAGCAAAGCAATTGAGTGGCTGATCAAAGCCGCCGCCGATGCCATCGCTGAGCTCCCTTCTCTGAACAATTCTTCGTTCCCTGACACGCCTAAGCAGCTCAGCGACGAGAAGAGGGCGAGCTGCGAGCGGGGAGGAATCAGAACCGGACCGGGAACCAAAGTCATCACCTTTCCTTGTCGAAATCCGCTTGCTCAAGTACTTCCGAGACCAGCAAGGGATCCGTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0008285 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010099 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040034 GO:0042127 GO:0045935 GO:0045962 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

211

Amino Acids

22.86

Weight (kDa)

9.41

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	94 - 177	2.1e-34	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30210 AT1G30210 AT4G18390 AT4G18390
fragaria_vesca	FvH4_3g05220 FvH4_3g05220
malus_domestica	MD05G1281100.v1.1 MD10G1259500.v1.1
prunus_persica	Prupe.3G099100_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1 Prupe.4G083500_v2.0.a1
pyrus_communis	pycom05g10530 pycom05g26120 pycom10g21590
rosa_chinensis	RchiOBHm_Chr5g0014491
rosa_laevigata	RLG00000032116
rosa_multiflora	Rmu_sc0000441.1_g000121 Rmu_sc0017039.1_g000003
rosa_roxburghii	Rroxscaffold_1G00062060
rosa_rugosa	Rorug05G0018400 Rorug05G0018500
rosa_samantha	Rh5AG113800 Rh5BG110400 Rh5CG122300 Rh5DG109700
rosa_wichuraiana	Rw5G009870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	529
AccII	CGCG	2 cut(s)	174, 261
AciI	CCGC	8 cut(s)	86, 172, 259, 354, 432, 435, 529, 587
AclWI	GGATC	2 cut(s)	614, 627
AcoI	YGGCCR	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	196
AcyI	GRCGYC	2 cut(s)	5, 206
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	312
AluBI	AGCT	5 cut(s)	70, 272, 454, 499, 522
AluI	AGCT	5 cut(s)	70, 272, 454, 499, 522
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	318, 601
AlwI	GGATC	2 cut(s)	614, 627
AoxI	GGCC	4 cut(s)	133, 148, 222, 333
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	496, 522
AspLEI	GCGC	2 cut(s)	116, 176
AspS9I	GGNCC	3 cut(s)	333, 334, 548
AsuC2I	CCSGG	3 cut(s)	122, 337, 552
AsuHPI	GGTGA	2 cut(s)	154, 559
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	337, 456
BbrPI	CACGTG	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	508, 509
BccI	CCATC	3 cut(s)	147, 263, 452
BceAI	ACGGC	3 cut(s)	231, 237, 295
BclI	TGATCA	1 cut(s)	423
BcnI	CCSGG	3 cut(s)	122, 337, 552
BcoDI	GTCTC	2 cut(s)	318, 601
BisI	GCNGC	4 cut(s)	432, 435, 497, 523
BlpI	GCTNAGC	2 cut(s)	450, 500
BlsI	GCNGC	4 cut(s)	433, 436, 498, 524
BmcAI	AGTACT	1 cut(s)	600
Bme1390I	CCNGG	3 cut(s)	122, 337, 552
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	333, 334, 548
BmiI	GGNNCC	3 cut(s)	335, 556, 621
BmrFI	CCNGG	3 cut(s)	122, 337, 552
BmsI	GCATC	2 cut(s)	73, 430
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu1102I	GCTNAGC	2 cut(s)	450, 500
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	3 cut(s)	122, 337, 552
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	2 cut(s)	5, 206
BsaI	GGTCTC	2 cut(s)	318, 601
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	327, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	153, 255
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	441, 514
BseNI	ACTGG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	508, 509
BseYI	CCCAGC	2 cut(s)	32, 401
Bsh1236I	CGCG	2 cut(s)	174, 261
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	4 cut(s)	135, 150, 224, 335
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	5 cut(s)	122, 328, 337, 546, 551
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	2 cut(s)	318, 601
BsnI	GGCC	4 cut(s)	135, 150, 224, 335
Bso31I	GGTCTC	2 cut(s)	318, 601
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	337, 456
Bsp143I	GATC	5 cut(s)	286, 370, 379, 423, 619
Bsp1720I	GCTNAGC	2 cut(s)	450, 500
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	8 cut(s)	86, 172, 259, 354, 432, 435, 529, 587
BspANI	GGCC	4 cut(s)	135, 150, 224, 335
BspCNI	CTCAG	2 cut(s)	442, 513
BspFNI	CGCG	2 cut(s)	174, 261
BspLI	GGNNCC	3 cut(s)	335, 556, 621
BspPI	GGATC	2 cut(s)	614, 627
BspTNI	GGTCTC	2 cut(s)	318, 601
BsrBI	CCGCTC	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	5 cut(s)	286, 370, 379, 423, 619
BssNI	GRCGYC	2 cut(s)	5, 206
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	506
BstACI	GRCGYC	2 cut(s)	5, 206
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	210, 520, 527, 591
BstDEI	CTNAG	3 cut(s)	450, 492, 500
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	153, 255
BstFNI	CGCG	2 cut(s)	174, 261
BstHHI	GCGC	2 cut(s)	116, 176
BstKTI	GATC	5 cut(s)	289, 373, 382, 426, 622
BstMAI	GTCTC	2 cut(s)	318, 601
BstMBI	GATC	5 cut(s)	286, 370, 379, 423, 619
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 236, 440, 496
BstSCI	CCNGG	3 cut(s)	120, 335, 550
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	2 cut(s)	174, 261
BstV1I	GCAGC	2 cut(s)	508, 509
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	3 cut(s)	52, 146, 184
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	4 cut(s)	135, 150, 224, 335
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	153, 255
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	4 cut(s)	210, 520, 527, 591
CfoI	GCGC	2 cut(s)	116, 176
Cfr13I	GGNCC	3 cut(s)	333, 334, 548
CpoI	CGGWCCG	1 cut(s)	548
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	599
CspI	CGGWCCG	1 cut(s)	548
CviAII	CATG	4 cut(s)	28, 52, 178, 184
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	3 cut(s)	450, 492, 500
DpnI	GATC	5 cut(s)	288, 372, 381, 425, 621
DpnII	GATC	5 cut(s)	286, 370, 379, 423, 619
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	506
EarI	CTCTTC	1 cut(s)	506
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	337, 456
Eco31I	GGTCTC	2 cut(s)	318, 601
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	454
Eco72I	CACGTG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	337, 456
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	31, 55, 181, 187
FaiI	YATR	4 cut(s)	29, 53, 179, 185
FatI	CATG	4 cut(s)	27, 51, 177, 183
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	432, 435, 497, 523
FokI	GGATG	2 cut(s)	140, 242
FriOI	GRGCYC	2 cut(s)	337, 456
Fsp4HI	GCNGC	4 cut(s)	432, 435, 497, 523
FspAI	RTGCGCAY	1 cut(s)	115
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 175
GluI	GCNGC	4 cut(s)	432, 435, 497, 523
GsaI	CCCAGC	2 cut(s)	36, 405
HaeIII	GGCC	4 cut(s)	135, 150, 224, 335
HapII	CCGG	5 cut(s)	122, 328, 337, 546, 551
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	116, 176
Hin1I	GRCGYC	2 cut(s)	5, 206
Hin1II	CATG	4 cut(s)	31, 55, 181, 187
Hin6I	GCGC	2 cut(s)	114, 174
HinP1I	GCGC	2 cut(s)	114, 174
HinfI	GANTC	1 cut(s)	537
HpaII	CCGG	5 cut(s)	122, 328, 337, 546, 551
HphI	GGTGA	2 cut(s)	154, 559
Hpy188I	TCNGA	5 cut(s)	169, 277, 465, 542, 606
Hpy188III	TCNNGA	2 cut(s)	267, 304
Hpy99I	CGWCG	4 cut(s)	217, 223, 281, 509
HpyAV	CCTTC	2 cut(s)	19, 468
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 236, 440, 496
HpyF3I	CTNAG	3 cut(s)	450, 492, 500
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	5, 206
Hsp92II	CATG	4 cut(s)	31, 55, 181, 187
HspAI	GCGC	2 cut(s)	114, 174
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	5 cut(s)	286, 370, 379, 423, 619
LmnI	GCTCC	2 cut(s)	124, 459
Lsp1109I	GCAGC	2 cut(s)	508, 509
LweI	GCATC	2 cut(s)	73, 430
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	196, 202, 346
MalI	GATC	5 cut(s)	288, 372, 381, 425, 621
MbiI	CCGCTC	1 cut(s)	529
MboI	GATC	5 cut(s)	286, 370, 379, 423, 619
MboII	GAAGA	4 cut(s)	4, 7, 465, 523
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	337, 456
MluCI	AATT	3 cut(s)	388, 411, 469
MmeI	TCCRAC	2 cut(s)	192, 300
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	3 cut(s)	50, 56, 182
MspI	CCGG	5 cut(s)	122, 328, 337, 546, 551
MspR9I	CCNGG	3 cut(s)	122, 337, 552
MunI	CAATTG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	174, 261
MwoI	GCNNNNNNNGC	4 cut(s)	180, 236, 440, 496
NciI	CCSGG	3 cut(s)	122, 337, 552
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	5 cut(s)	286, 370, 379, 423, 619
NlaIII	CATG	4 cut(s)	31, 55, 181, 187
NlaIV	GGNNCC	3 cut(s)	335, 556, 621
NmuCI	GTSAC	2 cut(s)	196, 202
NsbI	TGCGCA	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	4 cut(s)	433, 436, 498, 524
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	456
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	2 cut(s)	32, 401
PspN4I	GGNNCC	3 cut(s)	335, 556, 621
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	3 cut(s)	333, 334, 548
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	3 cut(s)	50, 56, 182
Rsr2I	CGGWCCG	1 cut(s)	548
RsrII	CGGWCCG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	4 cut(s)	432, 435, 497, 523
Sau3AI	GATC	5 cut(s)	286, 370, 379, 423, 619
Sau96I	GGNCC	3 cut(s)	333, 334, 548
ScaI	AGTACT	1 cut(s)	600
ScrFI	CCNGG	3 cut(s)	122, 337, 552
SduI	GDGCHC	2 cut(s)	337, 456
SfaNI	GCATC	2 cut(s)	73, 430
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	3 cut(s)	50, 56, 182
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
Sse9I	AATT	3 cut(s)	388, 411, 469
SsiI	CCGC	8 cut(s)	86, 172, 259, 354, 432, 435, 529, 587
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	120, 335, 550
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	142, 245, 580
TasI	AATT	3 cut(s)	388, 411, 469
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	2 cut(s)	434, 437
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	196, 202
TseI	GCWGC	2 cut(s)	496, 522
Tsp45I	GTSAC	2 cut(s)	196, 202
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.