Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003564

Physical Location & Seq

Genomic Coordinates Forward (+)

26624143 .. 26625313

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTACATAGCAGGGTACCCAAGTTCGACCCCACCTGAGGTTTTGCTTCAAGGAAAATCCACATTCAAGAACTACTTCAAAGCCAAATCAGACTTTGTCAAATACCCAATTCCTGAAAGTGGGCTTGAAGGGTTTTGGAAGAGGCTGATGCAGGAAGAGTCTCCTCTAGTAATTTTGACCCCATATGGGGGAATGGTGAGCAGGATTTCAGAGAGTGCAATCCCCTTCCCCCACAGAAAAGTTATCTTCAAAGTCCAGTACCTGACCGCATGGCAGGATGGGAAAGAAGATCAAAACAAACATATGGACTGGATCAGAAAGCTTTACAATTACATGACCCCTTATGTCACAATGTTTCCAAGGCAGGCATACGTGAATTATAGGGATCTTGATTTGGGGGTTAACAAGAAAAGCAACGTAAGCTTCATTGAGGCAAGTGATTGGGGGAAAAGGTATTTCATGGACAACTTCAAGAGGTTGATTGAGATAAAGACCGAAGTGGATCCTGATAATTTTTTCAGGCATGAACAAAGCATCCCTCCTCTCCCACCCTCTTCAAGATCTAGAACTTCTCCAGGCCATCACCATAGAACAGAGAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

202

Amino Acids

23.6

Weight (kDa)

9.34

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	123 - 180	2e-21	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003564)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30760 AT1G30760 AT2G34790 AT5G44390 AT5G44400
fragaria_vesca	FvH4_3g10920
malus_domestica	MD05G1268400.v1.1 MD05G1268500.v1.1 MD10G1244500.v1.1
prunus_persica	Prupe.4G096300_v2.0.a1 Prupe.4G096400_v2.0.a1
pyrus_communis	pycom05g25130 pycom05g25140 pycom10g20500
rosa_chinensis	RchiOBHm_Chr5g0017561 RchiOBHm_Chr5g0017591 RchiOBHm_Chr5g0017601 RchiOBHm_Chr5g0017621 RchiOBHm_Chr5g0017641
rosa_laevigata	RLG00000032298 RLG00000032301 RLG00000032302
rosa_multiflora	Rmu_sc0000346.1_g000021 Rmu_sc0000346.1_g000022 Rmu_sc0002565.1_g000007 Rmu_sc0003415.1_g000020
rosa_roxburghii	Rroxscaffold_1G00059870 Rroxscaffold_1G00059880 Rroxscaffold_1G00059890
rosa_rugosa	Rorug05G0036900 Rorug05G0037000 Rorug05G0037100
rosa_wichuraiana	Rw5G011310 Rw5G011320 Rw5G011330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	4 cut(s)	320, 393, 497, 510
AfaI	GTAC	3 cut(s)	5, 17, 260
AfiI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
AgsI	TTSAA	7 cut(s)	50, 67, 79, 128, 250, 472, 558
AjnI	CCWGG	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	322, 423, 603
AluI	AGCT	3 cut(s)	322, 423, 603
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	320, 393, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	208, 575
AxyI	CCTNAGG	1 cut(s)	36
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	15
BccI	CCATC	2 cut(s)	272, 588
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	3 cut(s)	167, 564, 604
BglII	AGATCT	1 cut(s)	560
Bme1390I	CCNGG	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	17, 504
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	138, 543
BpmI	CTGGAG	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
Bse1I	ACTGG	2 cut(s)	256, 314
Bse21I	CCTNAGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	2 cut(s)	283, 534
BseLI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	256, 314
BseRI	GAGGAG	2 cut(s)	153, 531
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	15
BslI	CCNNNNNNNGG	5 cut(s)	37, 119, 186, 187, 188
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	579
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	289, 312, 385, 502, 560
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	17, 504
BspPI	GGATC	4 cut(s)	320, 393, 497, 510
BspT107I	GGYRCC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	256, 314
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	5 cut(s)	289, 312, 385, 502, 560
BssT1I	CCWWGG	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	3 cut(s)	134, 150, 559
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	283, 534
BstKTI	GATC	5 cut(s)	292, 315, 388, 505, 563
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	289, 312, 385, 502, 560
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstX2I	RGATCY	3 cut(s)	385, 502, 560
BstYI	RGATCY	3 cut(s)	385, 502, 560
Bsu36I	CCTNAGG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	283, 534
Cac8I	GCNNGC	1 cut(s)	366
CaiI	CAGNNNCTG	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	4, 16, 259
CviAII	CATG	4 cut(s)	270, 334, 460, 524
CviJI	RGCY	7 cut(s)	83, 124, 145, 322, 423, 579, 603
CviKI_1	RGCY	7 cut(s)	83, 124, 145, 322, 423, 579, 603
CviQI	GTAC	3 cut(s)	4, 16, 259
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	5 cut(s)	291, 314, 387, 504, 562
DpnII	GATC	5 cut(s)	289, 312, 385, 502, 560
Eam1104I	CTCTTC	3 cut(s)	134, 150, 559
EarI	CTCTTC	3 cut(s)	134, 150, 559
Eco130I	CCWWGG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	359
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	4 cut(s)	273, 337, 463, 527
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	269, 333, 459, 523
FauNDI	CATATG	2 cut(s)	184, 303
FokI	GGATG	2 cut(s)	290, 521
FspBI	CTAG	3 cut(s)	167, 564, 604
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	579
Hin1II	CATG	4 cut(s)	273, 337, 463, 527
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	320, 421
HinfI	GANTC	1 cut(s)	158
HpaI	GTTAAC	1 cut(s)	403
HphI	GGTGA	2 cut(s)	208, 575
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	91, 211, 317
Hpy188III	TCNNGA	7 cut(s)	67, 113, 389, 472, 506, 558, 564
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	122, 235
HpyCH4IV	ACGT	2 cut(s)	372, 417
HpyCH4V	TGCA	2 cut(s)	151, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	2 cut(s)	372, 417
Hsp92II	CATG	4 cut(s)	273, 337, 463, 527
KpnI	GGTACC	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	5 cut(s)	289, 312, 385, 502, 560
LweI	GCATC	2 cut(s)	138, 543
MaeI	CTAG	3 cut(s)	167, 564, 604
MaeII	ACGT	2 cut(s)	372, 417
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	5 cut(s)	291, 314, 387, 504, 562
MboI	GATC	5 cut(s)	289, 312, 385, 502, 560
MboII	GAAGA	5 cut(s)	151, 167, 238, 299, 546
MflI	RGATCY	3 cut(s)	385, 502, 560
MluCI	AATT	5 cut(s)	108, 171, 328, 376, 511
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	8 cut(s)	31, 135, 174, 424, 468, 549, 552, 562
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeI	CATATG	2 cut(s)	184, 303
NdeII	GATC	5 cut(s)	289, 312, 385, 502, 560
NlaIII	CATG	4 cut(s)	273, 337, 463, 527
NlaIV	GGNNCC	2 cut(s)	17, 504
NmuCI	GTSAC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	17, 504
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	385, 502, 560
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	3 cut(s)	5, 17, 260
RsaNI	GTAC	3 cut(s)	4, 16, 259
SaqAI	TTAA	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	289, 312, 385, 502, 560
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	138, 543
Sse9I	AATT	5 cut(s)	108, 171, 328, 376, 511
SsiI	CCGC	1 cut(s)	267
SspMI	CTAG	3 cut(s)	167, 564, 604
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	359
TaiI	ACGT	2 cut(s)	375, 420
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	108, 171, 328, 376, 511
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	415, 448, 540
Tth111I	GACNNNGTC	1 cut(s)	95
XbaI	TCTAGA	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	3 cut(s)	167, 564, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.