pycom05g26420

Glycosyl transferase family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0006061
Physical Location & Seq
Forward (+)
27717703 .. 27719652
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGATACTAATCAAGTCGAAGAAGAAGGTTAGGGAGCCAAAGGAAGACAATGTTACCCTTGGTCCCATTCTCAAGGATGGAGAACATGCCTTTGGTGTTGCACACATTTATGCGTCATTCAATGACACGTTCATTCACGTAACTGATCTGTCAGGAAGGGAAACCCTTGTGCGTATCACTGGTGGTATGAAGGTTAAGGCTGACAGGGATGAGTCTTCCCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCACAGAGATGCAAGGAATTGGGCATTACTGCACTTCATATTAAGCTTCGTGCTACTGGCGGCAATAAAACTAAAACACCTGGTCCAGGTGCTCAGTCTGCCCTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATACCTACTGATAGCACCCGTAGAAAGGGTGGAAGGAGAGGAAGGAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 ko03010 map00550 map01100 map01502 map03010
Pfam Domains
Protein Families
Glycos_transf_4 Ribosomal_S11

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

10.39

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 32 - 150 9.3e-48 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 338, 436
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 331, 337
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 2 cut(s) 346, 364
ApeKI GCWGC 2 cut(s) 227, 239
AspS9I GGNCC 2 cut(s) 62, 335
AvaII GGWCC 2 cut(s) 62, 335
BbsI GAAGAC 2 cut(s) 51, 207
Bbv12I GWGCWC 2 cut(s) 346, 364
BbvI GCAGC 2 cut(s) 214, 251
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 333, 339
BisI GCNGC 3 cut(s) 228, 240, 313
BlsI GCNGC 3 cut(s) 229, 241, 314
Bme1390I CCNGG 2 cut(s) 333, 339
Bme18I GGWCC 2 cut(s) 62, 335
BmgT120I GGNCC 2 cut(s) 62, 335
BmiI GGNNCC 2 cut(s) 36, 64
BmrFI CCNGG 2 cut(s) 333, 339
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 51, 207
BpuEI CTTGAG 1 cut(s) 56
BsaAI YACGTR 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 436
Bse1I ACTGG 2 cut(s) 184, 313
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 333, 339
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 82, 214, 406
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 338, 436
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 184, 313
BseXI GCAGC 2 cut(s) 214, 251
BsgI GTGCAG 1 cut(s) 267
BsiHKAI GWGCWC 2 cut(s) 346, 364
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 338, 436
BsmFI GGGAC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 346, 364
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 36, 64
BsrI ACTGG 2 cut(s) 184, 313
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 333, 339
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 82, 214, 406
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 3 cut(s) 236, 350, 359
BstNI CCWGG 2 cut(s) 333, 339
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 331, 337
BstV1I GCAGC 2 cut(s) 214, 251
BstV2I GAAGAC 2 cut(s) 51, 207
BtsCI GGATG 3 cut(s) 82, 214, 406
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 62, 335
CseI GACGC 1 cut(s) 102
CsiI ACCWGGT 1 cut(s) 331
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 37, 200, 298, 460
CviKI_1 RGCY 4 cut(s) 37, 200, 298, 460
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 62, 335
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 331, 337
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 89
FaiI YATR 8 cut(s) 87, 111, 188, 223, 225, 233, 291, 395
FaqI GGGAC 1 cut(s) 48
FatI CATG 1 cut(s) 85
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 228, 240, 313
FokI GGATG 3 cut(s) 89, 221, 413
Fsp4HI GCNGC 3 cut(s) 228, 240, 313
GluI GCNGC 3 cut(s) 228, 240, 313
HgaI GACGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 212, 406
Hpy188III TCNNGA 2 cut(s) 153, 375
HpyAV CCTTC 5 cut(s) 19, 150, 184, 438, 447
HpyCH4IV ACGT 2 cut(s) 128, 138
HpyCH4V TGCA 5 cut(s) 101, 239, 254, 264, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 350, 359
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 128, 138
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 9 cut(s) 138, 165, 190, 294, 318, 324, 345, 351, 360
Lsp1109I GCAGC 2 cut(s) 214, 251
LweI GCATC 1 cut(s) 251
MabI ACCWGGT 1 cut(s) 331
MaeII ACGT 2 cut(s) 128, 138
MaeIII GTNAC 3 cut(s) 52, 139, 403
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 31, 34, 56, 207
MhlI GDGCHC 2 cut(s) 346, 364
MluCI AATT 2 cut(s) 269, 384
MlyI GAGTC 2 cut(s) 221, 400
MnlI CCTC 4 cut(s) 365, 391, 443, 450
MseI TTAA 2 cut(s) 195, 294
MslI CAYNNNNRTG 2 cut(s) 108, 259
MspR9I CCNGG 2 cut(s) 333, 339
MvaI CCWGG 2 cut(s) 333, 339
MwoI GCNNNNNNNGC 3 cut(s) 236, 350, 359
NdeI CATATG 1 cut(s) 223
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 36, 64
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 89
PkrI GCNGC 3 cut(s) 229, 241, 314
PleI GAGTC 2 cut(s) 220, 400
PpsI GAGTC 2 cut(s) 220, 400
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 331, 337
PspGI CCWGG 2 cut(s) 331, 337
PspN4I GGNNCC 2 cut(s) 36, 64
PspPI GGNCC 2 cut(s) 62, 335
RseI CAYNNNNRTG 2 cut(s) 108, 259
SaqAI TTAA 2 cut(s) 195, 294
SatI GCNGC 3 cut(s) 228, 240, 313
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 62, 335
SchI GAGTC 2 cut(s) 221, 400
ScrFI CCNGG 2 cut(s) 333, 339
SduI GDGCHC 2 cut(s) 346, 364
SetI ASST 8 cut(s) 30, 131, 141, 195, 300, 334, 343, 418
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 2 cut(s) 62, 335
SmiMI CAYNNNNRTG 2 cut(s) 108, 259
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 2 cut(s) 269, 384
SsiI CCGC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 331, 337
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 2 cut(s) 131, 141
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 269, 384
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 195, 294
Tru9I TTAA 2 cut(s) 195, 294
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 227, 239
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 3 cut(s) 121, 203, 278
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 62, 335
XagI CCTNNNNNAGG 1 cut(s) 336
XceI RCATGY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.