pycom06g03180

Phosphatidylinositol-glycan biosynthesis class X

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007198
Physical Location & Seq
Forward (+)
3993766 .. 3995483
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
ATGAGATCTGAATCTAACATGAAAGTAGAAAACATGAAGGCAAGAACATCCCAGCCATCAGCCACCGTTGCCTTCTCCAATTCCTTCCTTCTGGGATTTGTCTTGGTACTCTTCTCCGCCATTGGTTTCTGCACACATTCTTCTGCACATTATTCAACTCTTCAGGCAGGAACGTCTGATTCAAAATATGATGGTGGTGGCTCTAATATTAGTGCCTTTTCTAGATTCAACAAGTATATTATGCAGTCTTACTACGAAAAATATGAAAACTTGTTCGATTCAGATTTCGAAGACTTTGTAGCACAAGAGCTTCCTTTTGGTTTGTGTGAAGTGCTGCCGGAACATGATCTGAGTTTTGTTGTTAGACCCCCAATCTTGCACCACAATTTGATAGGCAGAGGTTCGCATCGTCATCTCACCTCATCCATTAGAGTTAACATCAAACCAGAGCCCATATATGAGCTACCAACTCACCATTGTGAGCTCATAATCGTTGAGAGACTGCCATCTGGGGTATTTGCGGATCCATTTGAGCTTCAACATCTCCTTCAGCGTGGTGCATATAGCGCTATAGCTGTGTTTGGAGATGCGAATTTGGAACTGCCTTCATTTCTTTCCAATCGTACCGCTGTTGAGGTTCACATGGATATTGGCCATAATTTCTTGCTGAGGCACGACAAAGAGTCTAACATCAACATAGAGCTTCCATTGCATGCACGATATCCACCTCTAGATGAAAGCGGCTATTGGGAAGTCAAATTTGGTATGCCGGATTTGTTCATGCGTTGTAGCATCGAGGGAACTTCACAAAATCAAAGCTGTTTGTATAAGATGCCAGAGATCAATGGTTCTGAATTAGGATACGCTAAACTTGTCTGGAAAATCCCTTCTGGGATGAAGGCGCATGCTGGAATCGTATCCACTCTCACGTTCGTTGCAGCCTTAATTTCGGCTATTGCAATTGCTGCTACATCCATTTTTCATTCAGGCGTTGCCTCCGGCAAACATTTGAAAGAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-X

Protein Analysis

341

Amino Acids

37.8

Weight (kDa)

6.08

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-X PF08320 134 - 323 4.1e-23 PIG-X / PBN1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 117, 521, 627, 741
AclWI GGATC 2 cut(s) 518, 531
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 2 cut(s) 592, 758
AcuI CTGAAG 2 cut(s) 146, 533
AfaI GTAC 2 cut(s) 108, 625
AfeI AGCGCT 1 cut(s) 568
AgsI TTSAA 5 cut(s) 156, 183, 229, 539, 1012
AhdI GACNNNNNGTC 1 cut(s) 682
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 7 cut(s) 310, 463, 484, 535, 575, 703, 819
AluI AGCT 7 cut(s) 310, 463, 484, 535, 575, 703, 819
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 2 cut(s) 518, 531
Aor51HI AGCGCT 1 cut(s) 568
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 3 cut(s) 334, 938, 965
ApoI RAATTY 2 cut(s) 592, 758
AspLEI GCGC 2 cut(s) 569, 904
AsuHPI GGTGA 2 cut(s) 409, 464
AsuII TTCGAA 1 cut(s) 288
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 1 cut(s) 523
BanII GRGCYC 2 cut(s) 453, 486
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 668
BbvI GCAGC 3 cut(s) 321, 950, 952
BccI CCATC 3 cut(s) 64, 185, 514
BciVI GTATCC 2 cut(s) 854, 928
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 2 cut(s) 222, 731
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 570
BfuI GTATCC 2 cut(s) 854, 928
BglII AGATCT 1 cut(s) 5
BisI GCNGC 4 cut(s) 335, 742, 939, 966
BlsI GCNGC 4 cut(s) 336, 743, 940, 967
BmeRI GACNNNNNGTC 1 cut(s) 682
BmiI GGNNCC 1 cut(s) 525
BmsI GCATC 4 cut(s) 415, 577, 801, 822
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 668
Bpu14I TTCGAA 1 cut(s) 288
BsaBI GATNNNNATC 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 707
Bse8I GATNNNNATC 1 cut(s) 10
BseGI GGATG 4 cut(s) 47, 422, 900, 971
BseJI GATNNNNATC 1 cut(s) 10
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 2 cut(s) 341, 659
BseXI GCAGC 3 cut(s) 321, 950, 952
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 2 cut(s) 115, 129
BshFI GGCC 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 3 cut(s) 338, 770, 999
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 453, 486
Bsp143I GATC 4 cut(s) 5, 346, 523, 840
BspACI CCGC 4 cut(s) 117, 521, 627, 741
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 2 cut(s) 342, 660
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 2 cut(s) 518, 531
BspT104I TTCGAA 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 707
BssMI GATC 4 cut(s) 5, 346, 523, 840
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 116, 165
BstAPI GCANNNNNTGC 1 cut(s) 965
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 714, 906
BstDEI CTNAG 2 cut(s) 350, 668
BstF5I GGATG 4 cut(s) 47, 422, 900, 971
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 2 cut(s) 569, 904
BstKTI GATC 4 cut(s) 8, 349, 526, 843
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 5, 346, 523, 840
BstMWI GCNNNNNNNGC 4 cut(s) 68, 566, 709, 965
BstNSI RCATGY 2 cut(s) 716, 908
BstSFI CTRYAG 1 cut(s) 570
BstV1I GCAGC 3 cut(s) 321, 950, 952
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 5, 523
BstYI RGATCY 2 cut(s) 5, 523
BsuI GTATCC 2 cut(s) 854, 928
BsuRI GGCC 1 cut(s) 654
BtsCI GGATG 4 cut(s) 47, 422, 900, 971
Cac8I GCNNGC 2 cut(s) 714, 906
CfoI GCGC 2 cut(s) 569, 904
Csp6I GTAC 2 cut(s) 107, 624
CviAII CATG 7 cut(s) 19, 34, 344, 643, 713, 781, 905
CviQI GTAC 2 cut(s) 107, 624
DdeI CTNAG 2 cut(s) 350, 668
DpnI GATC 4 cut(s) 7, 348, 525, 842
DpnII GATC 4 cut(s) 5, 346, 523, 840
DriI GACNNNNNGTC 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 116, 165
Eam1105I GACNNNNNGTC 1 cut(s) 682
EarI CTCTTC 2 cut(s) 116, 165
EciI GGCGGA 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 453, 486
Eco32I GATATC 1 cut(s) 722
Eco47III AGCGCT 1 cut(s) 568
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 146, 533
EcoICRI GAGCTC 1 cut(s) 484
EcoRV GATATC 1 cut(s) 722
EcoT38I GRGCYC 2 cut(s) 453, 486
FaeI CATG 7 cut(s) 22, 37, 347, 646, 716, 784, 908
FatI CATG 7 cut(s) 18, 33, 343, 642, 712, 780, 904
Fnu4HI GCNGC 4 cut(s) 335, 742, 939, 966
FokI GGATG 4 cut(s) 34, 409, 907, 958
FriOI GRGCYC 2 cut(s) 453, 486
Fsp4HI GCNGC 4 cut(s) 335, 742, 939, 966
FspBI CTAG 2 cut(s) 222, 731
GlaI GCGC 2 cut(s) 568, 903
GluI GCNGC 4 cut(s) 335, 742, 939, 966
GsaI CCCAGC 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 1 cut(s) 654
HapII CCGG 3 cut(s) 338, 770, 999
HhaI GCGC 2 cut(s) 569, 904
Hin1II CATG 7 cut(s) 22, 37, 347, 646, 716, 784, 908
Hin6I GCGC 2 cut(s) 567, 902
HinP1I GCGC 2 cut(s) 567, 902
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 7 cut(s) 11, 179, 225, 278, 683, 912, 1016
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 3 cut(s) 338, 770, 999
HphI GGTGA 2 cut(s) 409, 464
Hpy166II GTNNAC 2 cut(s) 436, 640
Hpy188I TCNGA 5 cut(s) 10, 178, 283, 351, 853
Hpy188III TCNNGA 3 cut(s) 222, 731, 877
Hpy8I GTNNAC 2 cut(s) 436, 640
HpyAV CCTTC 8 cut(s) 31, 82, 94, 98, 557, 615, 892, 897
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 173, 929
HpyCH4V TGCA 9 cut(s) 132, 146, 244, 379, 560, 712, 716, 938, 959
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 566, 709, 965
HpyF3I CTNAG 2 cut(s) 350, 668
HpySE526I ACGT 2 cut(s) 173, 929
Hsp92II CATG 7 cut(s) 22, 37, 347, 646, 716, 784, 908
HspAI GCGC 2 cut(s) 567, 902
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 4 cut(s) 5, 346, 523, 840
Lsp1109I GCAGC 3 cut(s) 321, 950, 952
LweI GCATC 4 cut(s) 415, 577, 801, 822
MaeI CTAG 2 cut(s) 222, 731
MaeII ACGT 2 cut(s) 173, 929
MalI GATC 4 cut(s) 7, 348, 525, 842
MboI GATC 4 cut(s) 5, 346, 523, 840
MboII GAAGA 4 cut(s) 103, 132, 152, 302
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 2 cut(s) 5, 523
MhlI GDGCHC 2 cut(s) 453, 486
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 8 cut(s) 79, 385, 592, 658, 758, 854, 945, 960
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 1 cut(s) 692
MnlI CCTC 7 cut(s) 392, 430, 628, 663, 738, 790, 1006
Mox20I TGGCCA 1 cut(s) 654
MscI TGGCCA 1 cut(s) 654
MseI TTAA 3 cut(s) 435, 944, 1021
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 3 cut(s) 338, 770, 999
MunI CAATTG 1 cut(s) 960
MwoI GCNNNNNNNGC 4 cut(s) 68, 566, 709, 965
NdeII GATC 4 cut(s) 5, 346, 523, 840
NlaIII CATG 7 cut(s) 22, 37, 347, 646, 716, 784, 908
NlaIV GGNNCC 1 cut(s) 525
NspI RCATGY 2 cut(s) 716, 908
NspV TTCGAA 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 2 cut(s) 716, 908
PfeI GAWTC 6 cut(s) 11, 179, 225, 278, 912, 1016
PkrI GCNGC 4 cut(s) 336, 743, 940, 967
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Psp124BI GAGCTC 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 525
PsuI RGATCY 2 cut(s) 5, 523
RsaI GTAC 2 cut(s) 108, 625
RsaNI GTAC 2 cut(s) 107, 624
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 3 cut(s) 435, 944, 1021
SatI GCNGC 4 cut(s) 335, 742, 939, 966
Sau3AI GATC 4 cut(s) 5, 346, 523, 840
SchI GAGTC 1 cut(s) 692
SduI GDGCHC 2 cut(s) 453, 486
SfaNI GCATC 4 cut(s) 415, 577, 801, 822
SfcI CTRYAG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 477
SphI GCATGC 2 cut(s) 716, 908
Sse9I AATT 8 cut(s) 79, 385, 592, 658, 758, 854, 945, 960
SsiI CCGC 4 cut(s) 117, 521, 627, 741
SspI AATATT 1 cut(s) 208
SspMI CTAG 2 cut(s) 222, 731
SstI GAGCTC 1 cut(s) 486
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 176, 932
TaqI TCGA 3 cut(s) 276, 288, 795
TasI AATT 8 cut(s) 79, 385, 592, 658, 758, 854, 945, 960
TauI GCSGC 1 cut(s) 744
TfiI GAWTC 6 cut(s) 11, 179, 225, 278, 912, 1016
Tru1I TTAA 3 cut(s) 435, 944, 1021
Tru9I TTAA 3 cut(s) 435, 944, 1021
TseI GCWGC 3 cut(s) 334, 938, 965
TspDTI ATGAA 8 cut(s) 35, 50, 279, 597, 750, 769, 911, 971
XapI RAATTY 2 cut(s) 592, 758
XbaI TCTAGA 2 cut(s) 221, 730
XceI RCATGY 2 cut(s) 716, 908
XspI CTAG 2 cut(s) 222, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.