Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

9662538 .. 9664701

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1809 bp

ATGATTAATATTCCTAGTATCAATACACAACTTTTTCTTGAATCACCAAAAAAAATTATTAATAAAAACATTAACAGTAATGAAGCAAATCAAGAAAGAATTAATAAAACAAATCAAAGTTTAATTAAATTTATTTCGATTATAAAAGAGTCACTTTCAAATACTAATATTAGTCTTAGTCAAAAAATTTCAAAGACTTTTTTTGACTTATCTTACTTTTCACAAGTATATGTATTTTACAAATTATCACAAACCCAACTTATTAAGTTAGAGAAATTGAAATCCGTATTTCAATATAATGGAACCCCCCTTTTTCTTAAGAATGAAATAAAGGATTTTTTTGTTGTAAGACAAGAACTATTTCATTCCAAATTAAGACCTAAGAATCTTTGCAATTTTGGAATGAATCAATGGACAAATTGGTTCAGGAGTCATTATGAATATCAATGTGATGTATCTCAAATTAAATGGTCTAGAGTAGTACCACAAAAATGGCGAAATATATTGAACTGTATAGCTCAAAATAAAGATTTATATAAAGATTTGTCATATAAATCTATAAATTCTGAAACTAAGAAGTACTCTTCAATTTATGGATCAACATTACAAGTAAAAACTAAACAAGATATTTTTTATAATTACAACACACATAAACAAAAATCATTTAATATGGTAGAAGATGATATTCGAGATATCGATAAAAATACGAATAGAAAATTTTTTGATTGGAGAATTCTAGATTTTTGTCTTAAAACGAAGGTCGATATTGAGGCCTGGATCAATATTGATACTGACACTAACAATAATAAATATACTAAGACTAGGGGTAATAAGTATCAAATAATTGATAAAATTAATAACAAGGGTCTTTTTTATCTCACACTTAAGCAAGACCAAAAAATCAACCTATCCAATCAAAAACCCCTTTTGGATTGGATGGGAATGAATGAAGAAATACTAAGTCATCCCATATCAAATCTGGAACTTTGGTTCTTGCCAGAATTTGTGAGACTTTATAATACGTATAAAATGAAACTGTGGGTTATACCAATTAAATTACTACTTTTTAATTCTAATATAAAAAAAATGCTAGTGAAAACAAAAGAAAAAAAATCTCTTGAATTAGAAAACCGAAATCAAGGAGCACAAGAATCCATGGGCCAAGCAAATCTTAAATCAGCTCTTTCAAACCAAGAAAAAGATGTTGAAGAAGATTATACGGGATCGGACATGAAAAAACATAGAAATAAAAAGCAATACAAGATCAATACAAAAGCGGAGTTTGATTTCTCCCTAAAAAGGTATTTGTATTTTCAATTGAGATGGGATGATTCTTTAAATAAAAAAATAATCAATAACATCAACTTATATTGTCTCTTGCTTAGACTGATAAATCCAAGAGAAATTACTATATCCTCTATTCAAAGGGGCAAAATGAGTCTGGATATTTTGACGATTCAGAAAGATGTAACTCTTACAGAATTTATTAAAAGGGGATTTTTTATTATTGAACCAATTCATCTAAAAAGTAAACATCAAATAAATCAAAGATACCGAGAAAAAAAACATGTTGATAAGAATTCTGATGAAGTCATTACAAAACATCAAAAGATGACAGGAAATAGATATAAAAAAATTATGATTTGTTTGTTCCTGAAAATATTTTATTGCCTAGACGTCCTATTTCTTTGGCCCAATTATCGATTAGAAGATTTAGCTTGTATGAATCGTTATTGGTTTAATACCAATAATGGCAGTTGTTTCAGTACGGTAAGGATACATATGTATCCACGATTGAAAATTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

603

Amino Acids

72.2

Weight (kDa)

9.66

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	143, 636, 1017
AatII	GACGTC	1 cut(s)	1680
AciI	CCGC	1 cut(s)	1277
AclWI	GGATC	3 cut(s)	604, 785, 1231
AcsI	RAATTY	9 cut(s)	128, 186, 562, 716, 732, 1001, 1481, 1579, 1800
AcyI	GRCGYC	1 cut(s)	1677
AfaI	GTAC	3 cut(s)	483, 581, 1768
AfiI	CCNNNNNNNGG	1 cut(s)	1299
AflII	CTTAAG	2 cut(s)	317, 884
AflIII	ACRYGT	1 cut(s)	1567
AjnI	CCWGG	1 cut(s)	773
AloI	GAACNNNNNNTCC	2 cut(s)	974, 1006
AluBI	AGCT	3 cut(s)	518, 1181, 1718
AluI	AGCT	3 cut(s)	518, 1181, 1718
Alw21I	GWGCWC	1 cut(s)	1147
Alw26I	GTCTC	2 cut(s)	1003, 1379
AlwI	GGATC	3 cut(s)	604, 785, 1231
AoxI	GGCC	3 cut(s)	771, 1159, 1691
ApoI	RAATTY	9 cut(s)	128, 186, 562, 716, 732, 1001, 1481, 1579, 1800
AseI	ATTAAT	4 cut(s)	6, 60, 102, 855
Asp700I	GAANNNNTTC	2 cut(s)	360, 1515
AspS9I	GGNCC	2 cut(s)	1159, 1692
AsuHPI	GGTGA	1 cut(s)	36
BaeI	ACNNNNGTAYC	4 cut(s)	1769, 1769, 1802, 1802
Bbv12I	GWGCWC	1 cut(s)	1147
BccI	CCATC	2 cut(s)	931, 1317
BciT130I	CCWGG	1 cut(s)	775
BciVI	GTATCC	2 cut(s)	1770, 1797
BcoDI	GTCTC	2 cut(s)	1003, 1379
BfaI	CTAG	6 cut(s)	15, 474, 737, 822, 1091, 1673
BfrI	CTTAAG	2 cut(s)	317, 884
BfuI	GTATCC	2 cut(s)	1770, 1797
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	1159, 1692
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	775
Bsa29I	ATCGAT	2 cut(s)	696, 1702
BsaAI	YACGTR	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	1677
BsaJI	CCNNGG	1 cut(s)	1155
Bsc4I	CCNNNNNNNGG	1 cut(s)	1299
BseBI	CCWGG	1 cut(s)	775
BseCI	ATCGAT	2 cut(s)	696, 1702
BseDI	CCNNGG	1 cut(s)	1155
BseGI	GGATG	3 cut(s)	942, 964, 1333
BseLI	CCNNNNNNNGG	1 cut(s)	1299
BshFI	GGCC	3 cut(s)	773, 1161, 1693
BshVI	ATCGAT	2 cut(s)	696, 1702
BsiHKAI	GWGCWC	1 cut(s)	1147
BslI	CCNNNNNNNGG	1 cut(s)	1299
BsmAI	GTCTC	2 cut(s)	1003, 1379
BsnI	GGCC	3 cut(s)	773, 1161, 1693
Bsp1286I	GDGCHC	1 cut(s)	1147
Bsp143I	GATC	4 cut(s)	596, 777, 1223, 1263
Bsp19I	CCATGG	1 cut(s)	1155
BspACI	CCGC	1 cut(s)	1277
BspANI	GGCC	3 cut(s)	773, 1161, 1693
BspDI	ATCGAT	2 cut(s)	696, 1702
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	604, 785, 1231
BspTI	CTTAAG	2 cut(s)	317, 884
BssECI	CCNNGG	1 cut(s)	1155
BssMI	GATC	4 cut(s)	596, 777, 1223, 1263
BssNI	GRCGYC	1 cut(s)	1677
BssT1I	CCWWGG	1 cut(s)	1155
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	4 cut(s)	77, 512, 1038, 1771
Bst6I	CTCTTC	1 cut(s)	589
BstACI	GRCGYC	1 cut(s)	1677
BstAFI	CTTAAG	2 cut(s)	317, 884
BstBAI	YACGTR	1 cut(s)	1023
BstDEI	CTNAG	6 cut(s)	176, 381, 573, 816, 959, 1382
BstDSI	CCRYGG	1 cut(s)	1155
BstF5I	GGATG	3 cut(s)	942, 964, 1333
BstKTI	GATC	4 cut(s)	599, 780, 1226, 1266
BstMAI	GTCTC	2 cut(s)	1003, 1379
BstMBI	GATC	4 cut(s)	596, 777, 1223, 1263
BstNI	CCWGG	1 cut(s)	775
BstNSI	RCATGY	1 cut(s)	1571
BstSCI	CCNGG	1 cut(s)	773
BstSNI	TACGTA	1 cut(s)	1023
BstXI	CCANNNNNNTGG	1 cut(s)	492
Bsu15I	ATCGAT	2 cut(s)	696, 1702
BsuI	GTATCC	2 cut(s)	1770, 1797
BsuRI	GGCC	3 cut(s)	773, 1161, 1693
BsuTUI	ATCGAT	2 cut(s)	696, 1702
BtgI	CCRYGG	1 cut(s)	1155
BtsCI	GGATG	3 cut(s)	942, 964, 1333
Cfr13I	GGNCC	2 cut(s)	1159, 1692
ClaI	ATCGAT	2 cut(s)	696, 1702
Csp6I	GTAC	3 cut(s)	482, 580, 1767
CviAII	CATG	3 cut(s)	1156, 1231, 1568
CviJI	RGCY	6 cut(s)	518, 773, 1161, 1181, 1693, 1718
CviKI_1	RGCY	6 cut(s)	518, 773, 1161, 1181, 1693, 1718
CviQI	GTAC	3 cut(s)	482, 580, 1767
DdeI	CTNAG	6 cut(s)	176, 381, 573, 816, 959, 1382
DpnI	GATC	4 cut(s)	598, 779, 1225, 1265
DpnII	GATC	4 cut(s)	596, 777, 1223, 1263
DraI	TTTAAA	1 cut(s)	1338
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco105I	TACGTA	1 cut(s)	1023
Eco130I	CCWWGG	1 cut(s)	1155
Eco147I	AGGCCT	1 cut(s)	773
Eco32I	GATATC	1 cut(s)	694
EcoRI	GAATTC	2 cut(s)	732, 1579
EcoRII	CCWGG	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	1155
ErhI	CCWWGG	1 cut(s)	1155
FaeI	CATG	3 cut(s)	1159, 1234, 1571
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 1155, 1187
FatI	CATG	3 cut(s)	1155, 1230, 1567
FauNDI	CATATG	1 cut(s)	1782
FokI	GGATG	3 cut(s)	949, 951, 1340
FspBI	CTAG	6 cut(s)	15, 474, 737, 822, 1091, 1673
HaeIII	GGCC	3 cut(s)	773, 1161, 1693
Hin1I	GRCGYC	1 cut(s)	1677
Hin1II	CATG	3 cut(s)	1159, 1234, 1571
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	1532
Hpy188I	TCNGA	4 cut(s)	568, 1228, 1461, 1585
Hpy8I	GTNNAC	1 cut(s)	1532
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	4 cut(s)	77, 512, 1038, 1771
HpyCH4IV	ACGT	2 cut(s)	1022, 1677
HpyCH4V	TGCA	1 cut(s)	393
HpyF3I	CTNAG	6 cut(s)	176, 381, 573, 816, 959, 1382
HpySE526I	ACGT	2 cut(s)	1022, 1677
Hsp92I	GRCGYC	1 cut(s)	1677
Hsp92II	CATG	3 cut(s)	1159, 1234, 1571
Kzo9I	GATC	4 cut(s)	596, 777, 1223, 1263
LmnI	GCTCC	1 cut(s)	1142
LpnPI	CCDG	8 cut(s)	412, 760, 787, 965, 1011, 1427, 1602, 1667
MaeI	CTAG	6 cut(s)	15, 474, 737, 822, 1091, 1673
MaeII	ACGT	2 cut(s)	1022, 1677
MaeIII	GTNAC	2 cut(s)	150, 1468
MalI	GATC	4 cut(s)	598, 779, 1225, 1265
MboI	GATC	4 cut(s)	596, 777, 1223, 1263
MboII	GAAGA	6 cut(s)	576, 689, 962, 1220, 1223, 1721
MfeI	CAATTG	1 cut(s)	1316
MhlI	GDGCHC	1 cut(s)	1147
MlyI	GAGTC	3 cut(s)	158, 439, 1447
MnlI	CCTC	2 cut(s)	763, 1426
MroXI	GAANNNNTTC	2 cut(s)	360, 1515
MslI	CAYNNNNRTG	1 cut(s)	490
MspCI	CTTAAG	2 cut(s)	317, 884
MspR9I	CCNGG	1 cut(s)	775
MunI	CAATTG	1 cut(s)	1316
MvaI	CCWGG	1 cut(s)	775
NcoI	CCATGG	1 cut(s)	1155
NdeI	CATATG	1 cut(s)	1782
NdeII	GATC	4 cut(s)	596, 777, 1223, 1263
NlaIII	CATG	3 cut(s)	1159, 1234, 1571
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	1571
PacI	TTAATTAA	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	773
PciI	ACATGT	1 cut(s)	1567
PdmI	GAANNNNTTC	2 cut(s)	360, 1515
PfeI	GAWTC	7 cut(s)	41, 385, 406, 1151, 1331, 1456, 1726
PleI	GAGTC	3 cut(s)	157, 438, 1446
PpsI	GAGTC	3 cut(s)	157, 438, 1446
Ppu21I	YACGTR	1 cut(s)	1023
PscI	ACATGT	1 cut(s)	1567
PshBI	ATTAAT	4 cut(s)	6, 60, 102, 855
PsiI	TTATAA	3 cut(s)	143, 636, 1017
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	1159, 1692
RsaI	GTAC	3 cut(s)	483, 581, 1768
RsaNI	GTAC	3 cut(s)	482, 580, 1767
RseI	CAYNNNNRTG	1 cut(s)	490
Sau3AI	GATC	4 cut(s)	596, 777, 1223, 1263
Sau96I	GGNCC	2 cut(s)	1159, 1692
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	3 cut(s)	158, 439, 1447
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	1 cut(s)	1147
SetI	ASST	9 cut(s)	382, 520, 762, 909, 1025, 1183, 1304, 1680, 1720
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	2 cut(s)	317, 884
SmoI	CTYRAG	2 cut(s)	317, 884
SnaBI	TACGTA	1 cut(s)	1023
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	1 cut(s)	1277
SspI	AATATT	4 cut(s)	10, 169, 784, 1662
SspMI	CTAG	6 cut(s)	15, 474, 737, 822, 1091, 1673
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	1 cut(s)	773
StyI	CCWWGG	1 cut(s)	1155
TaaI	ACNGT	4 cut(s)	77, 512, 1038, 1771
TaiI	ACGT	2 cut(s)	1025, 1680
TaqI	TCGA	5 cut(s)	137, 688, 696, 762, 1702
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	7 cut(s)	41, 385, 406, 1151, 1331, 1456, 1726
TseFI	GTSAC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	274
Vha464I	CTTAAG	2 cut(s)	317, 884
VspI	ATTAAT	4 cut(s)	6, 60, 102, 855
XapI	RAATTY	9 cut(s)	128, 186, 562, 716, 732, 1001, 1481, 1579, 1800
XbaI	TCTAGA	2 cut(s)	473, 736
XceI	RCATGY	1 cut(s)	1571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmnI	GAANNNNTTC	2 cut(s)	360, 1515
XspI	CTAG	6 cut(s)	15, 474, 737, 822, 1091, 1673
ZraI	GACGTC	1 cut(s)	1678
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.