Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003825.1

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Forward (+)

11584 .. 13696

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003825.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgctgggagcgtccggaataccatgggatcttcgtaaagttgatcagtatgagtgttatgacgaatttgattgggaaacctgcctgcaacaagccgctgagaagacagcctccggtcaccagtccggcggccagccctggtcctccaccattgccaatctggtaaggagcaactggacccgacccggaacaaacaccgcaagccacaaaaaaacgatcaacggagcccccttacctcagccgcctactgagaacctgcacccactcttgaagccgctcgactacacaccacagtcgatttctcagatgccaatctgcaccaacccagaggacgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0016491 GO:0016651 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa NADHdh

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

5.17

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	89, 264
AccBSI	CCGCTC	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	5 cut(s)	96, 129, 198, 242, 275
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	137
AlwI	GGATC	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	141, 177
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	141, 177
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	337
BfuAI	ACCTGC	2 cut(s)	89, 264
BisI	GCNGC	4 cut(s)	96, 130, 242, 275
BlsI	GCNGC	4 cut(s)	97, 131, 243, 276
Bme1390I	CCNGG	2 cut(s)	139, 186
Bme18I	GGWCC	2 cut(s)	141, 177
BmgT120I	GGNCC	2 cut(s)	141, 177
BmiI	GGNNCC	2 cut(s)	179, 226
BmrFI	CCNGG	2 cut(s)	139, 186
BmsI	GCATC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	23, 137
BsaWI	WCCGGW	2 cut(s)	14, 113
Bse1I	ACTGG	2 cut(s)	121, 179
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	23, 137
BseJI	GATNNNNATC	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	4 cut(s)	90, 240, 251, 317
BseNI	ACTGG	2 cut(s)	121, 179
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	2 cut(s)	242, 301
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	15, 114, 126, 186
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	28, 43, 216
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	5 cut(s)	96, 129, 198, 242, 275
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	4 cut(s)	91, 241, 250, 316
BspEI	TCCGGA	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	179, 226
BspMI	ACCTGC	2 cut(s)	89, 264
BspPI	GGATC	1 cut(s)	36
BsrBI	CCGCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	121, 179
BssECI	CCNNGG	2 cut(s)	23, 137
BssMI	GATC	3 cut(s)	28, 43, 216
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	86, 134, 202
BstDEI	CTNAG	4 cut(s)	99, 237, 249, 303
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	31, 46, 219
BstMBI	GATC	3 cut(s)	28, 43, 216
BstNI	CCWGG	1 cut(s)	139
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	137, 184
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	23
BveI	ACCTGC	2 cut(s)	89, 264
Cac8I	GCNNGC	3 cut(s)	86, 134, 202
Cfr13I	GGNCC	2 cut(s)	141, 177
CviAII	CATG	1 cut(s)	24
CviJI	RGCY	8 cut(s)	95, 110, 132, 136, 204, 227, 241, 274
CviKI_1	RGCY	8 cut(s)	95, 110, 132, 136, 204, 227, 241, 274
DdeI	CTNAG	4 cut(s)	99, 237, 249, 303
DpnI	GATC	3 cut(s)	30, 45, 218
DpnII	GATC	3 cut(s)	28, 43, 216
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	141, 177
Eco91I	GGTNACC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	1 cut(s)	27
FaiI	YATR	3 cut(s)	25, 51, 60
FatI	CATG	1 cut(s)	23
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	96, 130, 242, 275
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	96, 130, 242, 275
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	4 cut(s)	96, 130, 242, 275
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	4 cut(s)	15, 114, 126, 186
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	27
HpaII	CCGG	4 cut(s)	15, 114, 126, 186
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	15, 268
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	88, 259, 318
HpyF3I	CTNAG	4 cut(s)	99, 237, 249, 303
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	27
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	28, 43, 216
LmnI	GCTCC	3 cut(s)	8, 168, 224
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	30, 45, 218
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	3 cut(s)	28, 43, 216
MboII	GAAGA	2 cut(s)	23, 115
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	1 cut(s)	65
MnlI	CCTC	4 cut(s)	121, 154, 246, 322
MroI	TCCGGA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	4 cut(s)	15, 114, 126, 186
MspR9I	CCNGG	2 cut(s)	139, 186
MvaI	CCWGG	1 cut(s)	139
NciI	CCSGG	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	28, 43, 216
NlaIII	CATG	1 cut(s)	27
NlaIV	GGNNCC	2 cut(s)	179, 226
NmuCI	GTSAC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	97, 131, 243, 276
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	179, 226
PspPI	GGNCC	2 cut(s)	141, 177
PsuI	RGATCY	1 cut(s)	28
SatI	GCNGC	4 cut(s)	96, 130, 242, 275
Sau3AI	GATC	3 cut(s)	28, 43, 216
Sau96I	GGNCC	2 cut(s)	141, 177
ScrFI	CCNGG	2 cut(s)	139, 186
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	3 cut(s)	83, 238, 258
SfaNI	GCATC	1 cut(s)	297
SinI	GGWCC	2 cut(s)	141, 177
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	5 cut(s)	96, 129, 198, 242, 275
SspMI	CTAG	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	137, 184
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	279, 296
TasI	AATT	1 cut(s)	65
TauI	GCSGC	4 cut(s)	98, 132, 244, 277
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	141, 177
XapI	RAATTY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.