Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

50939636 .. 50980024

Gene Structure 40389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3393 bp

ATGTGGACAAACACAGAACTCAAAATTTCGGATTATAAAGAGAAAACCACAGAAGAAAGTGAGAAAAAAAAGGAAGAGGATAAAAAAGAGGAAGCCAAAAGAAAGGAGAAAGTACGTATAGAAATAGCGGAAGCCTGGGATAGTATTTTACTTGCTCAAGTACTAAGAGGTTTTTTGTTAGTAACCCAATCGATTCTTAGAAAATATATTATATTGCCTTCATTGATAATAGTTAAAAATATCGCCCGTATGCTATTGTTTCAATTTCCCGAATGGTCCGAGGATTTTAAAGATTGGAATCGAGAAATGTATGTTAAATGCACCTATAATGGCGTTCAATTATCAGAAAAAGAATTTCCAAAAAACTGGTTAACAGACGGTATTCAGATTAAGATCCTATTTCCTTTTCGTCTGAAACCTTGGCACACATCTAACCCACGAGCCCCTTATAATGATCCAATGAAAAAGAAAGATTCAAAAAATGATTTTTGTTTTTTAACAATTTTTGGAATGGAAGCTGAATTCCCTTTTGATTCTCCCAGAAAACAACTTTCATTTTTTGAACCCATTTTTAAAGAACTCAAAAGAAAAATTAGAAAATTGAAAAAGAAATGCTTTCTAATTCTAAGAATTTTAAAAGAAAAAACAAAATTGTTTGTAAATGTTTTAAAAGAAACAAAAAAATGGGTCATTAAAAGGATTCTTTTTTTAAAAGAAATAAAAAAAGAACTCTCACAAATAAATCCAATTCTATTATTTGGATTGAGAAAAAGAAAAGTATATGAATTGAGTAAAACTAAAAAAGATTCTATAACCAGTAATCTGATGATTGATGAATTGTCCATTGAAACTATACCATCATCCATTGAAACTATACCTCGGAATTGGACAAATTATTCATTGACAGAAAAAAAAATGCAGGATCTAACTGATAGAACAAGCACAATCATAAACCAAATAGAAAAAATTACAAATAAAAAAAAGGGCGGATTTCGAATTCCGGATCAAAATATTCGTTCTAACAAAATAAGTGATGATGATAAAGGGTTGGAATCACAAAAAAATATTTGGCAGATATTAAAAAGAAAAAATGCTCGACTAATACGTAAATTACATTATTTAATGAAATTTTTCATTGAAAGGATATACATAGATATCTTTCTGTGGCTCATTAATATTCCTAGGATCAATACACAACCATTTCTTGAATCAATAAAAAAAATTATTAATAAATACATTACCAATAATGAAACAAATCAAGAAAAAATGGATAAAACAAATCAAAGTTTAATTCACTTTATTTCGACTATAAAAAAGGCACTTTATAATACTAATATTAGTAATAAGAATTCAAATACTTTTTGTGACTTATCCCACTTTTCACAAGCCTATGTATTTTACAAACTCTCACAAACCCAATTTATTCATTTTTATTTTTATAAGTTAAAATCTGTCTTTCAATGTAATGGAGCAGCCCCCTTTATTAAGAATGAAATAAAGGATTATTTTATTGGAACACAAGAACTTTTTCATTCTCAATTAAGACATAAGAATCGTCAGAATTCTGGAATAAATCAATGGACAAATTGGTTAAGGAATCATTATCAATATGATATATCTCAGATTAGATGGTCTAGACTAGTACCACAAAAATGGCGAAATCGATTCAATCAACACTGTATGAATCAAAATAAGGATTTATGCAACTCCTCTAAAAAAACAAAAATTATTCACTACGAAAAACAAAATAATTTTGAAACGGCTTCATTACTAAACGAAAAAGAGAATTTTAAAAAACAATATAGATATGATCGGTTAGCATATAAATCTATTAATTCTGAAGATACAAAGTACTCTTCAATTTATGAATCGCCATTACACGTAAAAAATAACCAAGAAGTTTTTTCGAATTCCAACACAAATAAACGAAAATCTTTTTATATGATGGAAGGTATTCCTATTATCCCTATCAATAAGGATCTAGTACAAGATGATATTAGAGATATGGAGAAAAATCTGGATAGAAAATATTTTGATTGGAGAATTATCGATTTTTGTCTTAGAACGAAAATCGATATCGAGGCTTGGATCAATATTGATACTGACCCAAACAGTAATAAAAAATCTACTAAGGCTAAGCTTAATAATTATCAAATAATTGATAAAATCAAAAAGAAAAATCTTTTTTATCTCACAATTCATCAAGATCAAGAAATCAACTTATCCAATCAAAAACGTTTTTTTGATTGGATGGGAATGAATGAAGAAATACTAAATCGTCCCATATCAAATCTTGAACGTTGGTTCTTCCCAGAATTTTTGATATTTTATAATTTGTATAAAACAAAACCGTGGGTTATACCAATAAAATTACTTCTTTTAGATTCTAATATAAATGAAAACGCTACTGATATTGAAAACAAAAGCATCGCTGGAAATAAAAAAAAGGATCCTTTTATATCAATATCCTCCAGTGAAAAAAAATCTCTTGAATTAAAAAAACGAAATAAAGGGCAAAAAGAATCCGCCGCGGACCAAGCAAACTTTGAATCTGCTCTTTCAAACCAAGAAAAAGATGTTGAAGAAGATTATACGGGCTCGGACATGAAAAAACATAAAAATAAAAAGCAATACAAGAACAATACAAAAGCGGAGTTTGATTTCTTACTAAAAAGGTATTTTCTTTTTCAATTGCGATGGGATGATATTTTAAATAAAAAAATAATTAATAACATCAAAGTATATTGTCTCCTGCTTAGACTGATAAATCCACGAGAAATAACTATATCCTCTATTCAAAGGGGAGAAATGAGTCTTGATATTCTGATGATTCAGAAAAATTTAACTCTTACAGAATTGATCAAAAGAGGAATTTTGATTATTGAACCAATTCGTCTATCTATAAAAAATGATGGGCAATTTATTATGTCTCAAACCATTGGTATTTCGTTGGTTCATCAAAGTAAACACAAAATTAATCAAAAATACCGAGAAAAAACTCATGTTGATAAGAATTCTGATGAAGTCATTACCAAATATAAAAAGATGACTGGAAATAGGGATAAAAATCATTATGATTTGTTTGTTCCTGAAAATCTTTTATCACCTAGACTTCGGAGAGAATTTCGAATTCTAATTTGTTTCAATTCTAGGAATAGAAATGATATGCATAAAAATTCAGCATTGGGGAATGGGAATAAGGTAAACAGTCAGGTTTTGGATAAAAGCAAAGGATATCAAAAGAAACTTATTAAATTAAAGTTATTTCTGTGGCCCAATTATCGATTAGAAGATTTAGCTTGTATGAATCGTTATTGGTTTGATAGCAATAACGGCAGTCGTTTCGGTATGGTAAGGATACATATGTATCCGCGATTGAAAATTCATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

1130

Amino Acids

135.42

Weight (kDa)

9.74

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf1	PF05758	1 - 191	7.2e-101	Ycf1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	5 cut(s)	36, 450, 1326, 1440, 2331
AccII	CGCG	2 cut(s)	2531, 3373
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	7 cut(s)	128, 987, 2526, 2529, 2531, 2651, 3371
AclI	AACGTT	2 cut(s)	2236, 2299
AclWI	GGATC	9 cut(s)	388, 449, 930, 1011, 1193, 1986, 2096, 2444, 2457
AcuI	CTGAAG	1 cut(s)	1860
AfaI	GTAC	5 cut(s)	114, 162, 1644, 1853, 1986
AflIII	ACRYGT	1 cut(s)	1879
AhlI	ACTAGT	1 cut(s)	1639
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	518, 2140, 3299
AluI	AGCT	3 cut(s)	518, 2140, 3299
Alw26I	GTCTC	2 cut(s)	2753, 2934
AlwI	GGATC	9 cut(s)	388, 449, 930, 1011, 1193, 1986, 2096, 2444, 2457
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	1 cut(s)	3272
ApeKI	GCWGC	1 cut(s)	1472
AseI	ATTAAT	5 cut(s)	1173, 1227, 1833, 2727, 2976
Asp700I	GAANNNNTTC	4 cut(s)	1130, 1527, 1953, 2889
AspA2I	CCTAGG	1 cut(s)	1181
AspS9I	GGNCC	3 cut(s)	276, 2533, 3273
AsuHPI	GGTGA	1 cut(s)	3096
AsuII	TTCGAA	3 cut(s)	994, 1907, 3127
AvaII	GGWCC	2 cut(s)	276, 2533
AvrII	CCTAGG	1 cut(s)	1181
BaeI	ACNNNNGTAYC	4 cut(s)	3350, 3350, 3383, 3383
BamHI	GGATCC	1 cut(s)	2449
BanII	GRGCYC	2 cut(s)	445, 2600
BauI	CACGAG	2 cut(s)	438, 2772
BbvI	GCAGC	1 cut(s)	1484
BccI	CCATC	6 cut(s)	865, 1623, 1939, 2245, 2691, 2906
BceAI	ACGGC	2 cut(s)	1776, 3349
BcgI	CGANNNNNNTGC	2 cut(s)	3325, 3359
BciT130I	CCWGG	1 cut(s)	136
BciVI	GTATCC	2 cut(s)	3351, 3378
BclI	TGATCA	1 cut(s)	2859
BcoDI	GTCTC	2 cut(s)	2753, 2934
BcuI	ACTAGT	1 cut(s)	1639
BfaI	CTAG	7 cut(s)	1182, 1635, 1640, 1982, 3108, 3150, 3391
BfuI	GTATCC	2 cut(s)	3351, 3378
BisI	GCNGC	2 cut(s)	1473, 2529
BlnI	CCTAGG	1 cut(s)	1181
BlpI	GCTNAGC	1 cut(s)	2136
BlsI	GCNGC	2 cut(s)	1474, 2530
BmcAI	AGTACT	2 cut(s)	162, 1853
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	276, 2533
BmgT120I	GGNCC	3 cut(s)	276, 2533, 3273
BmiI	GGNNCC	1 cut(s)	2451
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	2436
BpmI	CTGGAG	1 cut(s)	2455
Bpu1102I	GCTNAGC	1 cut(s)	2136
Bpu14I	TTCGAA	3 cut(s)	994, 1907, 3127
BpuEI	CTTGAG	1 cut(s)	141
Bsa29I	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BsaAI	YACGTR	3 cut(s)	116, 1106, 1882
BsaBI	GATNNNNATC	3 cut(s)	297, 392, 3066
BsaJI	CCNNGG	7 cut(s)	135, 279, 419, 878, 1181, 2351, 2529
BsaWI	WCCGGW	1 cut(s)	1000
Bse1I	ACTGG	4 cut(s)	371, 816, 2472, 3055
Bse8I	GATNNNNATC	3 cut(s)	297, 392, 3066
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	1 cut(s)	136
BseCI	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BseDI	CCNNGG	7 cut(s)	135, 279, 419, 878, 1181, 2351, 2529
BseGI	GGATG	3 cut(s)	860, 2256, 2707
BseJI	GATNNNNATC	3 cut(s)	297, 392, 3066
BseMII	CTCAG	1 cut(s)	1634
BseNI	ACTGG	4 cut(s)	371, 816, 2472, 3055
BseRI	GAGGAG	1 cut(s)	1699
BseXI	GCAGC	1 cut(s)	1484
Bsh1236I	CGCG	2 cut(s)	2531, 3373
BshFI	GGCC	1 cut(s)	3274
BshVI	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BsiSI	CCGG	1 cut(s)	1001
BslFI	GGGAC	1 cut(s)	2265
BsmAI	GTCTC	2 cut(s)	2753, 2934
BsmFI	GGGAC	1 cut(s)	2265
BsnI	GGCC	1 cut(s)	3274
Bsp119I	TTCGAA	3 cut(s)	994, 1907, 3127
Bsp1286I	GDGCHC	2 cut(s)	445, 2600
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp1720I	GCTNAGC	1 cut(s)	2136
BspACI	CCGC	7 cut(s)	128, 987, 2526, 2529, 2531, 2651, 3371
BspANI	GGCC	1 cut(s)	3274
BspCNI	CTCAG	1 cut(s)	1633
BspDI	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	2 cut(s)	2531, 3373
BspLI	GGNNCC	1 cut(s)	2451
BspPI	GGATC	9 cut(s)	388, 449, 930, 1011, 1193, 1986, 2096, 2444, 2457
BspT104I	TTCGAA	3 cut(s)	994, 1907, 3127
BsrI	ACTGG	4 cut(s)	371, 816, 2472, 3055
BssECI	CCNNGG	7 cut(s)	135, 279, 419, 878, 1181, 2351, 2529
BssSI	CACGAG	2 cut(s)	438, 2772
BssT1I	CCWWGG	2 cut(s)	419, 1181
Bst2BI	CACGAG	2 cut(s)	438, 2772
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	5 cut(s)	380, 1679, 2114, 2352, 3209
Bst6I	CTCTTC	2 cut(s)	69, 1861
BstBAI	YACGTR	3 cut(s)	116, 1106, 1882
BstBI	TTCGAA	3 cut(s)	994, 1907, 3127
BstDEI	CTNAG	8 cut(s)	164, 197, 626, 1620, 2060, 2130, 2136, 2756
BstDSI	CCRYGG	2 cut(s)	2351, 2529
BstF5I	GGATG	3 cut(s)	860, 2256, 2707
BstFNI	CGCG	2 cut(s)	2531, 3373
BstMAI	GTCTC	2 cut(s)	2753, 2934
BstMWI	GCNNNNNNNGC	2 cut(s)	2537, 3333
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstSNI	TACGTA	2 cut(s)	116, 1106
BstUI	CGCG	2 cut(s)	2531, 3373
BstV1I	GCAGC	1 cut(s)	1484
BstX2I	RGATCY	4 cut(s)	393, 922, 1978, 2449
BstXI	CCANNNNNNTGG	2 cut(s)	366, 1653
BstYI	RGATCY	4 cut(s)	393, 922, 1978, 2449
Bsu15I	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BsuI	GTATCC	2 cut(s)	3351, 3378
BsuRI	GGCC	1 cut(s)	3274
BsuTUI	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
BtgI	CCRYGG	2 cut(s)	2351, 2529
BtgZI	GCGATG	2 cut(s)	2413, 2710
BtsCI	GGATG	3 cut(s)	860, 2256, 2707
BtsIMutI	CAGTG	2 cut(s)	1675, 2479
Cfr13I	GGNCC	3 cut(s)	276, 2533, 3273
Cfr42I	CCGCGG	1 cut(s)	2532
ClaI	ATCGAT	5 cut(s)	191, 1663, 2049, 2073, 3283
Csp6I	GTAC	5 cut(s)	113, 161, 1643, 1852, 1985
CviAII	CATG	2 cut(s)	2605, 3002
CviQI	GTAC	5 cut(s)	113, 161, 1643, 1852, 1985
DdeI	CTNAG	8 cut(s)	164, 197, 626, 1620, 2060, 2130, 2136, 2756
DraI	TTTAAA	7 cut(s)	289, 574, 636, 669, 711, 1792, 2712
Eam1104I	CTCTTC	2 cut(s)	69, 1861
EarI	CTCTTC	2 cut(s)	69, 1861
EciI	GGCGGA	2 cut(s)	1002, 2515
Eco105I	TACGTA	2 cut(s)	116, 1106
Eco130I	CCWWGG	2 cut(s)	419, 1181
Eco24I	GRGCYC	2 cut(s)	445, 2600
Eco32I	GATATC	3 cut(s)	1156, 2077, 3236
Eco47I	GGWCC	2 cut(s)	276, 2533
Eco57I	CTGAAG	1 cut(s)	1860
EcoRI	GAATTC	7 cut(s)	521, 996, 1348, 1561, 1909, 3013, 3129
EcoRII	CCWGG	1 cut(s)	134
EcoRV	GATATC	3 cut(s)	1156, 2077, 3236
EcoT14I	CCWWGG	2 cut(s)	419, 1181
EcoT22I	ATGCAT	1 cut(s)	3171
EcoT38I	GRGCYC	2 cut(s)	445, 2600
ErhI	CCWWGG	2 cut(s)	419, 1181
FaeI	CATG	2 cut(s)	2608, 3005
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	1 cut(s)	2265
FatI	CATG	2 cut(s)	2604, 3001
FauNDI	CATATG	1 cut(s)	3363
FbaI	TGATCA	1 cut(s)	2859
Fnu4HI	GCNGC	2 cut(s)	1473, 2529
FokI	GGATG	3 cut(s)	847, 2263, 2714
FriOI	GRGCYC	2 cut(s)	445, 2600
Fsp4HI	GCNGC	2 cut(s)	1473, 2529
FspBI	CTAG	7 cut(s)	1182, 1635, 1640, 1982, 3108, 3150, 3391
GluI	GCNGC	2 cut(s)	1473, 2529
GsuI	CTGGAG	1 cut(s)	2455
HaeIII	GGCC	1 cut(s)	3274
HapII	CCGG	1 cut(s)	1001
Hin1II	CATG	2 cut(s)	2608, 3005
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	1 cut(s)	2138
HpaI	GTTAAC	1 cut(s)	372
HpaII	CCGG	1 cut(s)	1001
HphI	GGTGA	1 cut(s)	3096
Hpy166II	GTNNAC	4 cut(s)	6, 372, 2966, 3205
Hpy8I	GTNNAC	4 cut(s)	6, 372, 2966, 3205
HpyAV	CCTTC	2 cut(s)	228, 1943
HpyCH4III	ACNGT	5 cut(s)	380, 1679, 2114, 2352, 3209
HpyCH4IV	ACGT	5 cut(s)	115, 1105, 1881, 2236, 2299
HpyCH4V	TGCA	4 cut(s)	321, 919, 1704, 3169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	2537, 3333
HpyF3I	CTNAG	8 cut(s)	164, 197, 626, 1620, 2060, 2130, 2136, 2756
HpySE526I	ACGT	5 cut(s)	115, 1105, 1881, 2236, 2299
Hsp92II	CATG	2 cut(s)	2608, 3005
Kpn2I	TCCGGA	1 cut(s)	1000
Ksp22I	TGATCA	1 cut(s)	2859
KspAI	GTTAAC	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	2532
LmnI	GCTCC	1 cut(s)	1469
Lsp1109I	GCAGC	1 cut(s)	1484
LweI	GCATC	1 cut(s)	2436
MaeI	CTAG	7 cut(s)	1182, 1635, 1640, 1982, 3108, 3150, 3391
MaeII	ACGT	5 cut(s)	115, 1105, 1881, 2236, 2299
MaeIII	GTNAC	2 cut(s)	181, 1364
MboII	GAAGA	9 cut(s)	65, 86, 1848, 1853, 2276, 2299, 2594, 2597, 3302
MfeI	CAATTG	1 cut(s)	2690
MflI	RGATCY	4 cut(s)	393, 922, 1978, 2449
MhlI	GDGCHC	2 cut(s)	445, 2600
MlyI	GAGTC	1 cut(s)	2821
MmeI	TCCRAC	2 cut(s)	1029, 1938
Mph1103I	ATGCAT	1 cut(s)	3171
MroI	TCCGGA	1 cut(s)	1000
MroXI	GAANNNNTTC	4 cut(s)	1130, 1527, 1953, 2889
MslI	CAYNNNNRTG	1 cut(s)	1651
MspA1I	CMGCKG	1 cut(s)	2531
MspI	CCGG	1 cut(s)	1001
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	2690
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	2 cut(s)	2531, 3373
MwoI	GCNNNNNNNGC	2 cut(s)	2537, 3333
NdeI	CATATG	1 cut(s)	3363
NlaIII	CATG	2 cut(s)	2608, 3005
NlaIV	GGNNCC	1 cut(s)	2451
NmuCI	GTSAC	1 cut(s)	1364
NsiI	ATGCAT	1 cut(s)	3171
NspV	TTCGAA	3 cut(s)	994, 1907, 3127
PcsI	WCGNNNNNNNCGW	1 cut(s)	1102
PdmI	GAANNNNTTC	4 cut(s)	1130, 1527, 1953, 2889
PkrI	GCNGC	2 cut(s)	1474, 2530
PleI	GAGTC	1 cut(s)	2820
PpsI	GAGTC	1 cut(s)	2820
Ppu21I	YACGTR	3 cut(s)	116, 1106, 1882
PshBI	ATTAAT	5 cut(s)	1173, 1227, 1833, 2727, 2976
PsiI	TTATAA	5 cut(s)	36, 450, 1326, 1440, 2331
Psp1406I	AACGTT	2 cut(s)	2236, 2299
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	2451
PspPI	GGNCC	3 cut(s)	276, 2533, 3273
PsuI	RGATCY	4 cut(s)	393, 922, 1978, 2449
RsaI	GTAC	5 cut(s)	114, 162, 1644, 1853, 1986
RsaNI	GTAC	5 cut(s)	113, 161, 1643, 1852, 1985
RseI	CAYNNNNRTG	1 cut(s)	1651
SacII	CCGCGG	1 cut(s)	2532
SatI	GCNGC	2 cut(s)	1473, 2529
Sau96I	GGNCC	3 cut(s)	276, 2533, 3273
ScaI	AGTACT	2 cut(s)	162, 1853
SchI	GAGTC	1 cut(s)	2821
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	2 cut(s)	445, 2600
SfaNI	GCATC	1 cut(s)	2436
Sfr303I	CCGCGG	1 cut(s)	2532
SfuI	TTCGAA	3 cut(s)	994, 1907, 3127
SgrBI	CCGCGG	1 cut(s)	2532
SinI	GGWCC	2 cut(s)	276, 2533
SmiMI	CAYNNNNRTG	1 cut(s)	1651
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SnaBI	TACGTA	2 cut(s)	116, 1106
SpeI	ACTAGT	1 cut(s)	1639
SsiI	CCGC	7 cut(s)	128, 987, 2526, 2529, 2531, 2651, 3371
SspI	AATATT	6 cut(s)	1012, 1066, 1177, 1336, 2030, 2095
SspMI	CTAG	7 cut(s)	1182, 1635, 1640, 1982, 3108, 3150, 3391
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	2 cut(s)	419, 1181
TaaI	ACNGT	5 cut(s)	380, 1679, 2114, 2352, 3209
TaiI	ACGT	5 cut(s)	118, 1108, 1884, 2239, 2302
TatI	WGTACW	3 cut(s)	160, 1851, 1984
TauI	GCSGC	1 cut(s)	2531
TscAI	CASTG	2 cut(s)	1682, 2479
TseFI	GTSAC	1 cut(s)	1364
TseI	GCWGC	1 cut(s)	1472
Tsp45I	GTSAC	1 cut(s)	1364
TspRI	CASTG	2 cut(s)	1682, 2479
VpaK11BI	GGWCC	2 cut(s)	276, 2533
VspI	ATTAAT	5 cut(s)	1173, 1227, 1833, 2727, 2976
XbaI	TCTAGA	1 cut(s)	1634
XmaJI	CCTAGG	1 cut(s)	1181
XmnI	GAANNNNTTC	4 cut(s)	1130, 1527, 1953, 2889
XspI	CTAG	7 cut(s)	1182, 1635, 1640, 1982, 3108, 3150, 3391
ZrmI	AGTACT	2 cut(s)	162, 1853
Zsp2I	ATGCAT	1 cut(s)	3171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.