Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

35320 .. 37427

Gene Structure 2108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGGTCCCCACCATCCATCAATGCATGGTGTTCTTCGACTTATCATTACTCTAGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACCGAGGGATGGAAAAAATTGCGGAAAACCGAACAATTATACAATATTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTCACAGAAGCAATAACGGTAAATGGACCGGAACAGCTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAATAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATCTGTTATGGCTCGGCCCTTTTATGGCGGATATTGGTGCACAGACTCCCTTTTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCTGCCACCGGTATGAGAATGATGCATAATTATTTTCGGATCGGGGGGGTAGCGGCTGATCTCCCTCATGGCTGGATAGATAAATGTTTGGATTTCTGCGATTATTTTTTAATAAGGGTTGCTGAATATCAACAACTTATTACACGCAATCCTATTTTTTTAGAACGAGTCGAGGGGGTAGGCATTATTGGTCGAGAGGAAGTAATAAATTGGGGTTTATCGGGACCAATGCTGCGAGCGTCCGGAATACAATGGGATCTTCGTAAAGTTGATCAGTATGAGTGTTATGACGAATTTGATTGGGAAGTACAGTGGCAAAAAGAAGGGGATTCGTTGGCTCGTTATCTAGTCCGAATTGGTGAAATGATGGAATCCATAAAAATTATTCAACAGGCTCTCGAAGGAATTCCGGGGGGGCCATATGAGAATTTAGAAACCCGATACTTTGATAGAGAAAGGAATCCAGAATGGAATGATTTTGAATATCGCTTTATTAGTAAAAAACCTTCTCCTACATTTGAATTGCCGAAACAAGAACTTTATGTGAGAGTCGAAGCTCCAAAAGGAGAGTTGGGGGTTTTTCTGATAGGGGATCGGAGTGGTTTTCCTTGGAGATGGAAAATTCGACCGCCGGGTTTTATCAATTTGCAAATTCTTCCTCAGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa NADHdh

Protein Analysis

380

Amino Acids

44.19

Weight (kDa)

5.29

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	110 - 379	1e-102	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	638
AciI	CCGC	4 cut(s)	122, 326, 449, 1025
AclWI	GGATC	3 cut(s)	443, 660, 996
AcsI	RAATTY	5 cut(s)	689, 801, 823, 1017, 1047
AfaI	GTAC	2 cut(s)	240, 705
AfiI	CCNNNNNNNGG	3 cut(s)	89, 109, 322
AflIII	ACRYGT	1 cut(s)	161
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	4 cut(s)	236, 785, 878, 917
AluBI	AGCT	6 cut(s)	179, 223, 255, 293, 398, 953
AluI	AGCT	6 cut(s)	179, 223, 255, 293, 398, 953
Alw21I	GWGCWC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	336
AlwI	GGATC	3 cut(s)	443, 660, 996
Aor13HI	TCCGGA	1 cut(s)	638
AoxI	GGCC	2 cut(s)	313, 812
ApaLI	GTGCAC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	398, 628
ApoI	RAATTY	5 cut(s)	689, 801, 823, 1017, 1047
AsiGI	ACCGGT	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	801
AspS9I	GGNCC	5 cut(s)	5, 212, 314, 620, 812
AsuC2I	CCSGG	2 cut(s)	807, 1029
AsuHPI	GGTGA	2 cut(s)	71, 767
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	3 cut(s)	5, 212, 620
BaeGI	GKGCMC	1 cut(s)	340
BarI	GAAGNNNNNNTAC	2 cut(s)	886, 918
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	385, 615
BccI	CCATC	6 cut(s)	21, 25, 50, 103, 757, 1005
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	2 cut(s)	807, 1029
BfaI	CTAG	3 cut(s)	53, 743, 1100
BisI	GCNGC	3 cut(s)	399, 450, 629
BlsI	GCNGC	3 cut(s)	400, 451, 630
Bme1390I	CCNGG	2 cut(s)	807, 1029
Bme18I	GGWCC	3 cut(s)	5, 212, 620
BmgT120I	GGNCC	5 cut(s)	5, 212, 314, 620, 812
BmiI	GGNNCC	4 cut(s)	6, 7, 621, 813
BmrFI	CCNGG	2 cut(s)	807, 1029
BmsI	GCATC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	393
BpuMI	CCSGG	2 cut(s)	807, 1029
BsaJI	CCNNGG	3 cut(s)	103, 806, 1004
BsaWI	WCCGGW	3 cut(s)	214, 404, 638
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 109, 322
Bse118I	RCCGGY	1 cut(s)	404
BseAI	TCCGGA	1 cut(s)	638
BseDI	CCNNGG	3 cut(s)	103, 806, 1004
BseGI	GGATG	2 cut(s)	13, 114
BseLI	CCNNNNNNNGG	3 cut(s)	89, 109, 322
BseMII	CTCAG	1 cut(s)	1070
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	385, 615
BseYI	CCCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	1025
BshFI	GGCC	2 cut(s)	315, 814
BshTI	ACCGGT	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	1025
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	5 cut(s)	215, 405, 639, 806, 1028
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	3 cut(s)	89, 109, 322
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	315, 814
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	638
Bsp143I	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
BspACI	CCGC	4 cut(s)	122, 326, 449, 1025
BspANI	GGCC	2 cut(s)	315, 814
BspCNI	CTCAG	1 cut(s)	1069
BspEI	TCCGGA	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	6, 7, 621, 813
BspPI	GGATC	3 cut(s)	443, 660, 996
BspT104I	TTCGAA	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	3 cut(s)	103, 806, 1004
BssMI	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
BssT1I	CCWWGG	1 cut(s)	1004
Bst4CI	ACNGT	3 cut(s)	77, 205, 708
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	253, 633
BstDEI	CTNAG	1 cut(s)	1056
BstF5I	GGATG	2 cut(s)	13, 114
BstKTI	GATC	7 cut(s)	388, 438, 457, 655, 670, 991, 1135
BstMBI	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
BstMCI	CGRYCG	1 cut(s)	1025
BstSCI	CCNGG	2 cut(s)	805, 1027
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	385, 615
BstX2I	RGATCY	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	315, 814
BtsCI	GGATG	2 cut(s)	13, 114
BtsIMutI	CAGTG	1 cut(s)	713
Cac8I	GCNNGC	2 cut(s)	253, 633
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	5 cut(s)	5, 212, 314, 620, 812
CseI	GACGC	1 cut(s)	624
Csp6I	GTAC	2 cut(s)	239, 704
CspAI	ACCGGT	1 cut(s)	404
CviAII	CATG	2 cut(s)	26, 464
CviQI	GTAC	2 cut(s)	239, 704
DdeI	CTNAG	1 cut(s)	1056
DpnI	GATC	7 cut(s)	387, 437, 456, 654, 669, 990, 1134
DpnII	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	1004
Eco32I	GATATC	1 cut(s)	1114
Eco47I	GGWCC	3 cut(s)	5, 212, 620
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	801
EcoRV	GATATC	1 cut(s)	1114
EcoT14I	CCWWGG	1 cut(s)	1004
EcoT22I	ATGCAT	2 cut(s)	27, 423
ErhI	CCWWGG	1 cut(s)	1004
FaeI	CATG	2 cut(s)	29, 467
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	2 cut(s)	25, 463
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	399, 450, 629
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	3 cut(s)	399, 450, 629
FspBI	CTAG	3 cut(s)	53, 743, 1100
GluI	GCNGC	3 cut(s)	399, 450, 629
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	315, 814
HapII	CCGG	5 cut(s)	215, 405, 639, 806, 1028
HgaI	GACGC	1 cut(s)	624
Hin1II	CATG	2 cut(s)	29, 467
HinfI	GANTC	7 cut(s)	283, 343, 564, 725, 767, 856, 945
HpaII	CCGG	5 cut(s)	215, 405, 639, 806, 1028
HphI	GGTGA	2 cut(s)	71, 767
Hpy166II	GTNNAC	3 cut(s)	80, 189, 338
Hpy188I	TCNGA	6 cut(s)	263, 365, 435, 749, 981, 993
Hpy188III	TCNNGA	6 cut(s)	53, 590, 618, 639, 794, 860
Hpy8I	GTNNAC	3 cut(s)	80, 189, 338
HpyAV	CCTTC	3 cut(s)	713, 791, 912
HpyCH4III	ACNGT	3 cut(s)	77, 205, 708
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	25, 338, 421, 1045
HpyF3I	CTNAG	1 cut(s)	1056
HpySE526I	ACGT	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	29, 467
KflI	GGGWCCC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	2 cut(s)	385, 615
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	3 cut(s)	53, 743, 1100
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	7 cut(s)	387, 437, 456, 654, 669, 990, 1134
MboI	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
MboII	GAAGA	4 cut(s)	26, 74, 647, 1043
MflI	RGATCY	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	340
MlyI	GAGTC	4 cut(s)	292, 337, 573, 954
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	98, 471, 562, 586, 1065
Mph1103I	ATGCAT	2 cut(s)	27, 423
MroI	TCCGGA	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	2 cut(s)	506, 1065
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	5 cut(s)	215, 405, 639, 806, 1028
MspR9I	CCNGG	2 cut(s)	807, 1029
NciI	CCSGG	2 cut(s)	807, 1029
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
NlaIII	CATG	2 cut(s)	29, 467
NlaIV	GGNNCC	4 cut(s)	6, 7, 621, 813
NmeAIII	GCCGAG	1 cut(s)	291
NsiI	ATGCAT	2 cut(s)	27, 423
NspV	TTCGAA	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	3 cut(s)	725, 767, 856
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	400, 451, 630
PleI	GAGTC	4 cut(s)	291, 337, 572, 953
PpsI	GAGTC	4 cut(s)	291, 337, 572, 953
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	4 cut(s)	6, 7, 621, 813
PspPI	GGNCC	5 cut(s)	5, 212, 314, 620, 812
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	652
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	240, 705
RsaNI	GTAC	2 cut(s)	239, 704
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	2 cut(s)	506, 1065
SatI	GCNGC	3 cut(s)	399, 450, 629
Sau3AI	GATC	7 cut(s)	385, 435, 454, 652, 667, 988, 1132
Sau96I	GGNCC	5 cut(s)	5, 212, 314, 620, 812
SchI	GAGTC	4 cut(s)	292, 337, 573, 954
ScrFI	CCNGG	2 cut(s)	807, 1029
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	408
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	3 cut(s)	5, 212, 620
SmiMI	CAYNNNNRTG	1 cut(s)	407
SsiI	CCGC	4 cut(s)	122, 326, 449, 1025
SspI	AATATT	3 cut(s)	87, 146, 232
SspMI	CTAG	3 cut(s)	53, 743, 1100
StyD4I	CCNGG	2 cut(s)	805, 1027
StyI	CCWWGG	1 cut(s)	1004
TaaI	ACNGT	3 cut(s)	77, 205, 708
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	7 cut(s)	37, 393, 567, 589, 795, 948, 1021
TatI	WGTACW	1 cut(s)	703
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	725, 767, 856
Tru1I	TTAA	2 cut(s)	506, 1065
Tru9I	TTAA	2 cut(s)	506, 1065
TscAI	CASTG	1 cut(s)	713
TseI	GCWGC	2 cut(s)	398, 628
TspDTI	ATGAA	1 cut(s)	1088
TspRI	CASTG	1 cut(s)	713
VneI	GTGCAC	1 cut(s)	336
VpaK11BI	GGWCC	3 cut(s)	5, 212, 620
XapI	RAATTY	5 cut(s)	689, 801, 823, 1017, 1047
XbaI	TCTAGA	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	3 cut(s)	53, 743, 1100
Zsp2I	ATGCAT	2 cut(s)	27, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.