Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

11639218 .. 11640389

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATATACCGACTACAAAAAAATACCTCATGATAGTCAATATGGGCCCCCACCACCCATCAAGGGTTATTTACACTCTAGATGGTAAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACCAAGGAATGGAAAAAATTGCAAAAAATCGAATAATTATACAATATTTGCCTTATGTAACACGATGGGGTTATTTAGCTATTATGGGTTTTCCTTGGAGATGGAAAATCAGCCCGCCGAGTTTTATCAATTTGCAAATTCTTCCGCGGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTATGGGAGAAGTTGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

9.36

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	74 - 117	1.5e-13	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	274
AciI	CCGC	3 cut(s)	242, 272, 274
AcsI	RAATTY	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	64, 116, 136
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AoxI	GGCC	1 cut(s)	46
ApaI	GGGCCC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	46, 47
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	50
BccI	CCATC	4 cut(s)	67, 77, 186, 222
BfaI	CTAG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	46, 47
BmiI	GGNNCC	2 cut(s)	48, 49
BsaJI	CCNNGG	3 cut(s)	130, 221, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 116, 136
BseDI	CCNNGG	3 cut(s)	130, 221, 272
BseLI	CCNNNNNNNGG	3 cut(s)	64, 116, 136
BseSI	GKGCMC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	64, 116, 136
BsnI	GGCC	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
BspACI	CCGC	3 cut(s)	242, 272, 274
BspANI	GGCC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	48, 49
BssECI	CCNNGG	3 cut(s)	130, 221, 272
BssT1I	CCWWGG	2 cut(s)	130, 221
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	242
BstDSI	CCRYGG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	242
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	46, 47
Cfr42I	CCGCGG	1 cut(s)	275
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	48, 206, 240, 299
CviKI_1	RGCY	4 cut(s)	48, 206, 240, 299
Eco130I	CCWWGG	2 cut(s)	130, 221
Eco24I	GRGCYC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	130, 221
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	130, 221
FaeI	CATG	1 cut(s)	34
FaiI	YATR	9 cut(s)	8, 32, 44, 167, 183, 212, 308, 326, 338
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	249
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188III	TCNNGA	2 cut(s)	31, 80
Hpy8I	GTNNAC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	149, 262
Hsp92II	CATG	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	275
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	5 cut(s)	144, 162, 256, 264, 293
MnlI	CCTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	274
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	48, 49
NmeAIII	GCCGAG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	48, 49
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	46, 47
SacII	CCGCGG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	46, 47
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	3 cut(s)	30, 208, 322
Sfr303I	CCGCGG	1 cut(s)	275
SgeI	CNNG	9 cut(s)	43, 75, 92, 143, 201, 234, 253, 258, 285
SgrBI	CCGCGG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	144, 162, 256, 264, 293
SsiI	CCGC	3 cut(s)	242, 272, 274
SspI	AATATT	2 cut(s)	114, 173
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	2 cut(s)	130, 221
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	157
TasI	AATT	5 cut(s)	144, 162, 256, 264, 293
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	17, 305
Van91I	CCANNNNNTGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	264
XbaI	TCTAGA	1 cut(s)	79
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.