Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

29661831 .. 29663363

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGCAGGATCTAACTGATAGAACAAGCACAATCATAAACCAAATAGAAAAAATTACAAATAAAAAAAAGGGCGGATTTCGAATTTCAGATCCAAATATTCGTTCTAACAAAATAAGTGATGATGATAAAGGGTTGGAATCACAAAAAAATATTTGGCAGATATTAAAAAGAAAAAATGCTCGACTAATACGTAAATTACATTATTTTATGAAATTTTTCATTGAAAGGATATACATAGATATCTTTCTGTGGATCATTAATATTCCTAGGATCAATACACAACCATTTCTTGAATCAATAAAAAAAATTATTAATAAATACATTACCAATGAAACAAATCAAGAAAAAATGGATAAAACAAATCAAAGTTTAATTCACTTTATTTCGACTATAAAAAAGGCACTTTATAATACTAATATTAGTAATAAGAATTCAAATACTTTTTGTGACTTATCCCACTTTTCACAAGCCTATGTATTTTACAAACTCTCACAAACCCAATTTATTCCTTTTTATTTTTATAAGTTAAAATCTGTCTTTCAATGTAATGGAGCAGCCCCCTTTATTAAGAATGAAATAAAGGATTATTTTATTGGAACACAAGAACTTTTTCATTCTCAATTAAGACATAAGAATCGTCAGAATTCTGGAATAAATCAATGGACAAATTGGTTAAGGAATCATTATCAATATGATATATCTCAGATTAGATGGTCTAGACTAGTATCACAAAAATGGCGAAATCGATTCAATCAACACTGTACAAATCAAAATAAGGATTTATGCAACTCCTCTAAAAAAACAAAATTTATTCACTACGAAAAACAAAATAATTTTGAAACGGCTTCATTACTAAACGAAAAAGAGAATTTTAAAAAACAATATAGATATGATCGGTTAGCATATAAATCTATTAATTCTGAAGATACGAAGTACTCTTCAATTTATGAATCGCCATTACACGTAAAAAATAACCAAGAAGTTTTTTCGAATTCCAACACAAATAAACGAAAATCTTTTTATATGATGGAAGGTATTCCTATTATCCCTATCAATAAGGATCTAGTACAAGATGATATTAGAGATATGGAGAAAAATCTGGATAGAAAATATTTTGATTGGAGAATTCTCGATTTTTGTCTTAGAACGAAAATCGATAGCGAGGCTTGGATCAATATTGATACTGACCCAAACAGTAATAAAAAATCTACTAAGGCTAAGCTTAATAATTATCAAATAATTGATAAAATCAAAAAGAAAAATCTTTTTTATCTCACAATTCATCAAGATCAAGAAATCAACTTATCCAATCAAAAACGTTTTTTTGATTGGATGGGAATGAATGAAGAAATACTAAATCGTCCCATATCAAATCTTGAACGTTGGTTCTTCCCAGAATTTTTGATATTTTATAATTTGTATAAAACAAAACCGTGGGTTATACCAATAAAATTACTTCTTTTAGATTCTAATATAAATGAAAACGCTACTGATATTGAAAACAAAAGCATCGTTGGTATTGCCTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ycf1

Protein Analysis

510

Amino Acids

61.38

Weight (kDa)

9.58

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	408, 522, 1413
AciI	CCGC	1 cut(s)	72
AclI	AACGTT	2 cut(s)	1318, 1381
AclWI	GGATC	6 cut(s)	15, 83, 260, 278, 1068, 1178
AcsI	RAATTY	9 cut(s)	81, 212, 430, 643, 806, 868, 991, 1125, 1397
AcuI	CTGAAG	1 cut(s)	942
AfaI	GTAC	3 cut(s)	763, 935, 1068
AflIII	ACRYGT	1 cut(s)	961
AgsI	TTSAA	9 cut(s)	224, 293, 435, 542, 751, 839, 942, 1379, 1499
AhlI	ACTAGT	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	1 cut(s)	1222
AluI	AGCT	1 cut(s)	1222
AlwI	GGATC	6 cut(s)	15, 83, 260, 278, 1068, 1178
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	9 cut(s)	81, 212, 430, 643, 806, 868, 991, 1125, 1397
AseI	ATTAAT	3 cut(s)	258, 312, 915
Asp700I	GAANNNNTTC	3 cut(s)	215, 609, 1035
AspA2I	CCTAGG	1 cut(s)	266
AsuII	TTCGAA	2 cut(s)	79, 989
AvrII	CCTAGG	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	566
BccI	CCATC	3 cut(s)	705, 1021, 1327
BceAI	ACGGC	1 cut(s)	858
BcuI	ACTAGT	1 cut(s)	721
BfaI	CTAG	4 cut(s)	267, 717, 722, 1064
BisI	GCNGC	1 cut(s)	555
BlnI	CCTAGG	1 cut(s)	266
BlpI	GCTNAGC	1 cut(s)	1218
BlsI	GCNGC	1 cut(s)	556
BmcAI	AGTACT	1 cut(s)	935
BmsI	GCATC	1 cut(s)	1518
Bpu1102I	GCTNAGC	1 cut(s)	1218
Bpu14I	TTCGAA	2 cut(s)	79, 989
Bsa29I	ATCGAT	2 cut(s)	745, 1155
BsaAI	YACGTR	2 cut(s)	191, 964
BsaJI	CCNNGG	2 cut(s)	266, 1433
BseCI	ATCGAT	2 cut(s)	745, 1155
BseDI	CCNNGG	2 cut(s)	266, 1433
BseGI	GGATG	1 cut(s)	1338
BseMII	CTCAG	1 cut(s)	716
BseRI	GAGGAG	1 cut(s)	781
BseXI	GCAGC	1 cut(s)	566
BshVI	ATCGAT	2 cut(s)	745, 1155
BslFI	GGGAC	1 cut(s)	1347
BsmFI	GGGAC	1 cut(s)	1347
Bsp119I	TTCGAA	2 cut(s)	79, 989
Bsp1407I	TGTACA	1 cut(s)	761
Bsp143I	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
Bsp1720I	GCTNAGC	1 cut(s)	1218
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	715
BspDI	ATCGAT	2 cut(s)	745, 1155
BspPI	GGATC	6 cut(s)	15, 83, 260, 278, 1068, 1178
BspT104I	TTCGAA	2 cut(s)	79, 989
BsrGI	TGTACA	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	266, 1433
BssMI	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
BssT1I	CCWWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	761, 1196, 1434
Bst6I	CTCTTC	1 cut(s)	943
BstAUI	TGTACA	1 cut(s)	761
BstBAI	YACGTR	2 cut(s)	191, 964
BstBI	TTCGAA	2 cut(s)	79, 989
BstDEI	CTNAG	4 cut(s)	702, 1142, 1212, 1218
BstDSI	CCRYGG	1 cut(s)	1433
BstF5I	GGATG	1 cut(s)	1338
BstKTI	GATC	8 cut(s)	10, 91, 255, 273, 895, 1063, 1173, 1291
BstMBI	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
BstSNI	TACGTA	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	7, 88, 1060
BstYI	RGATCY	3 cut(s)	7, 88, 1060
Bsu15I	ATCGAT	2 cut(s)	745, 1155
BsuTUI	ATCGAT	2 cut(s)	745, 1155
BtgI	CCRYGG	1 cut(s)	1433
BtsCI	GGATG	1 cut(s)	1338
BtsIMutI	CAGTG	1 cut(s)	757
ClaI	ATCGAT	2 cut(s)	745, 1155
Csp6I	GTAC	3 cut(s)	762, 934, 1067
CviJI	RGCY	6 cut(s)	470, 557, 845, 1166, 1217, 1222
CviKI_1	RGCY	6 cut(s)	470, 557, 845, 1166, 1217, 1222
CviQI	GTAC	3 cut(s)	762, 934, 1067
DdeI	CTNAG	4 cut(s)	702, 1142, 1212, 1218
DpnI	GATC	8 cut(s)	9, 90, 254, 272, 894, 1062, 1172, 1290
DpnII	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
DraI	TTTAAA	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	943
EarI	CTCTTC	1 cut(s)	943
EciI	GGCGGA	1 cut(s)	87
Eco105I	TACGTA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	942
EcoRI	GAATTC	4 cut(s)	430, 643, 991, 1125
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaqI	GGGAC	1 cut(s)	1347
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	1345
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	4 cut(s)	267, 717, 722, 1064
GluI	GCNGC	1 cut(s)	555
HindIII	AAGCTT	1 cut(s)	1220
HinfI	GANTC	7 cut(s)	137, 293, 634, 679, 747, 950, 1466
Hpy188I	TCNGA	4 cut(s)	88, 642, 705, 922
Hpy188III	TCNNGA	9 cut(s)	290, 341, 648, 717, 1100, 1130, 1286, 1292, 1376
HpyAV	CCTTC	1 cut(s)	1025
HpyCH4III	ACNGT	3 cut(s)	761, 1196, 1434
HpyCH4IV	ACGT	4 cut(s)	190, 963, 1318, 1381
HpyCH4V	TGCA	2 cut(s)	4, 786
HpyF3I	CTNAG	4 cut(s)	702, 1142, 1212, 1218
HpySE526I	ACGT	4 cut(s)	190, 963, 1318, 1381
Kzo9I	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
LmnI	GCTCC	1 cut(s)	551
LpnPI	CCDG	3 cut(s)	633, 1085, 1407
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	1 cut(s)	1518
MaeI	CTAG	4 cut(s)	267, 717, 722, 1064
MaeII	ACGT	4 cut(s)	190, 963, 1318, 1381
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	8 cut(s)	9, 90, 254, 272, 894, 1062, 1172, 1290
MboI	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
MboII	GAAGA	4 cut(s)	930, 935, 1358, 1381
MflI	RGATCY	3 cut(s)	7, 88, 1060
MmeI	TCCRAC	2 cut(s)	114, 1020
MnlI	CCTC	2 cut(s)	802, 1156
MroXI	GAANNNNTTC	3 cut(s)	215, 609, 1035
MslI	CAYNNNNRTG	1 cut(s)	733
NdeII	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
NmuCI	GTSAC	1 cut(s)	446
NspV	TTCGAA	2 cut(s)	79, 989
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PdmI	GAANNNNTTC	3 cut(s)	215, 609, 1035
PfeI	GAWTC	7 cut(s)	137, 293, 634, 679, 747, 950, 1466
PkrI	GCNGC	1 cut(s)	556
Ppu21I	YACGTR	2 cut(s)	191, 964
PshBI	ATTAAT	3 cut(s)	258, 312, 915
PsiI	TTATAA	3 cut(s)	408, 522, 1413
Psp1406I	AACGTT	2 cut(s)	1318, 1381
PsuI	RGATCY	3 cut(s)	7, 88, 1060
RsaI	GTAC	3 cut(s)	763, 935, 1068
RsaNI	GTAC	3 cut(s)	762, 934, 1067
RseI	CAYNNNNRTG	1 cut(s)	733
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	8 cut(s)	7, 88, 252, 270, 892, 1060, 1170, 1288
ScaI	AGTACT	1 cut(s)	935
SetI	ASST	6 cut(s)	193, 966, 1036, 1224, 1321, 1384
SfaNI	GCATC	1 cut(s)	1518
SfuI	TTCGAA	2 cut(s)	79, 989
SmiMI	CAYNNNNRTG	1 cut(s)	733
SnaBI	TACGTA	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	721
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	6 cut(s)	97, 151, 262, 418, 1112, 1177
SspMI	CTAG	4 cut(s)	267, 717, 722, 1064
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	761, 1196, 1434
TaiI	ACGT	4 cut(s)	193, 966, 1321, 1384
TaqI	TCGA	7 cut(s)	79, 181, 386, 745, 989, 1131, 1155
TatI	WGTACW	3 cut(s)	761, 933, 1066
TfiI	GAWTC	7 cut(s)	137, 293, 634, 679, 747, 950, 1466
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	446
TspRI	CASTG	1 cut(s)	764
VspI	ATTAAT	3 cut(s)	258, 312, 915
XapI	RAATTY	9 cut(s)	81, 212, 430, 643, 806, 868, 991, 1125, 1397
XbaI	TCTAGA	1 cut(s)	716
XmaJI	CCTAGG	1 cut(s)	266
XmnI	GAANNNNTTC	3 cut(s)	215, 609, 1035
XspI	CTAG	4 cut(s)	267, 717, 722, 1064
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.