RLG00000000041

Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
Physical Location & Seq
Forward (+)
247707 .. 248638
932 bp
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UTR
Exon/CDS
Intron
RLM00000000041

Sequence Viewer

Length: 585 bp
ATGAGTCTTGATATTCTGATGATTCAGAAAAATTTAACTCTTACAGAATTGATCAAAAGAGGAATTTTGATTATTGAACCAATTCGTCTATCTATAAAAAACGATGGGCAATTTATTATGTCTCAAACCATTGGTATTTCGTTGGTTCATCAAAGTAAACACAAAATTAATCAAAAATACCGAGAAAAAACTCATGTTGATAAGAATTCTGATGAAGTCATTACCAAATATAAAAAGATGACTGGAAATAGGGATAAAAATCATTATGATTTGTTTGTTCCTGAAAATCTTTTATCACCTAGACTTCGGAGAGAATTTCGAATTCTAATTTGTTTCAATTCTAGGAATAGAAATGATATGCATAAAAATTCAGCATTGGGGAATGGGAATAAGGTAAACAGTCAGGTTTTGGATAAAAGCAAAGGATATCAAAAGAAACTTATTAAATTAAAGTTATTTCTGTGGCCCAATTATCGATTAGAAGATTTAGCTTGTATGAATCGTTATTGGTTTGATAGCAATAACGGCAGTCGTTTCGGTATGGTAAGGATACATATGTATCCGCGATTGAAAATTCATTACTAG

Protein Analysis

195

Amino Acids

23.08

Weight (kDa)

10.09

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 565
AciI CCGC 1 cut(s) 563
AcsI RAATTY 7 cut(s) 31, 63, 205, 314, 321, 367, 573
AgsI TTSAA 3 cut(s) 77, 337, 571
AluBI AGCT 1 cut(s) 491
AluI AGCT 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 126
AoxI GGCC 1 cut(s) 464
ApoI RAATTY 7 cut(s) 31, 63, 205, 314, 321, 367, 573
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 288
AsuII TTCGAA 1 cut(s) 319
BaeI ACNNNNGTAYC 4 cut(s) 542, 542, 575, 575
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 541
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BciVI GTATCC 2 cut(s) 543, 570
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 3 cut(s) 300, 342, 583
BfuI GTATCC 2 cut(s) 543, 570
BmgT120I GGNCC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 258
BseNI ACTGG 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 565
BshFI GGCC 1 cut(s) 466
BshVI ATCGAT 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 466
Bsp119I TTCGAA 1 cut(s) 319
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 563
BspANI GGCC 1 cut(s) 466
BspDI ATCGAT 1 cut(s) 475
BspFNI CGCG 1 cut(s) 565
BspT104I TTCGAA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 247
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 319
BstFNI CGCG 1 cut(s) 565
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstUI CGCG 1 cut(s) 565
Bsu15I ATCGAT 1 cut(s) 475
BsuI GTATCC 2 cut(s) 543, 570
BsuRI GGCC 1 cut(s) 466
BsuTUI ATCGAT 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 465
ClaI ATCGAT 1 cut(s) 475
CviAII CATG 1 cut(s) 194
CviJI RGCY 2 cut(s) 466, 491
CviKI_1 RGCY 2 cut(s) 466, 491
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 428
EcoRI GAATTC 2 cut(s) 205, 321
EcoRV GATATC 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 363
FaeI CATG 1 cut(s) 197
FatI CATG 1 cut(s) 193
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 51
FspBI CTAG 3 cut(s) 300, 342, 583
HaeIII GGCC 1 cut(s) 466
Hin1II CATG 1 cut(s) 197
HinfI GANTC 3 cut(s) 4, 22, 499
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 2 cut(s) 158, 397
Hpy188I TCNGA 4 cut(s) 18, 27, 211, 309
Hpy188III TCNNGA 2 cut(s) 8, 281
Hpy8I GTNNAC 2 cut(s) 158, 397
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
Hsp92II CATG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 228, 294, 389
MaeI CTAG 3 cut(s) 300, 342, 583
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 494
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 4 cut(s) 35, 168, 444, 449
MvnI CGCG 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 525
NdeI CATATG 1 cut(s) 555
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 363
NspV TTCGAA 1 cut(s) 319
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 2 cut(s) 22, 499
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 168
PspPI GGNCC 1 cut(s) 465
SaqAI TTAA 4 cut(s) 35, 168, 444, 449
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 465
SchI GAGTC 1 cut(s) 13
SetI ASST 4 cut(s) 301, 396, 408, 493
SfuI TTCGAA 1 cut(s) 319
SsiI CCGC 1 cut(s) 563
SspMI CTAG 3 cut(s) 300, 342, 583
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 319, 475
TfiI GAWTC 2 cut(s) 22, 499
Tru1I TTAA 4 cut(s) 35, 168, 444, 449
Tru9I TTAA 4 cut(s) 35, 168, 444, 449
TspDTI ATGAA 4 cut(s) 137, 228, 512, 566
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 7 cut(s) 31, 63, 205, 314, 321, 367, 573
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 3 cut(s) 300, 342, 583
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.