Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002790.1

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

82115 .. 82630

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002790.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgctgcgagcgtccggaatacactgggatcttcgtaaagttgatcagtatgagtgttatgacgaatttgattgggaagtacagtggcaaaaagaaggggattcgttggctcgttatctagtccgaattggtgaaatggtggaatccataaaaattattcaacaggctctcgaaggaattccgggggggccatatgagaatttagaaacccgatattttgatagagaaaggaatccagaatggaatgattttgaatatcgctttattagtaaaaaaccttctcctacatttgaattgccgaaacaagaactttctgtgagagtcgaagctccaaaaggagagtttggggtttttctgataggggatcggagtggatttccttggagatggaaaattcgaccgccgggttttatcaatttgcaaattcttcctcagttagttaaaacaatgaaattggctgatattatgacaatactaggtagtatagatatcattatgggagaagttgattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

171

Amino Acids

20.09

Weight (kDa)

4.98

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	36, 372
AcsI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	161, 254, 293
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
AlwI	GGATC	2 cut(s)	36, 372
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	183, 405
AsuHPI	GGTGA	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BccI	CCATC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	183, 405
BfaI	CTAG	2 cut(s)	119, 476
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	183, 405
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	183, 405
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	183, 405
BsaJI	CCNNGG	2 cut(s)	182, 380
BsaWI	WCCGGW	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	182, 380
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	15, 182, 404
BsnI	GGCC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	28, 43, 364
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	36, 372
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	182, 380
BssMI	GATC	3 cut(s)	28, 43, 364
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	31, 46, 367
BstMBI	GATC	3 cut(s)	28, 43, 364
BstMCI	CGRYCG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	181, 403
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	22, 89
Cac8I	GCNNGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	5 cut(s)	110, 167, 190, 329, 458
CviKI_1	RGCY	5 cut(s)	110, 167, 190, 329, 458
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	30, 45, 366
DpnII	GATC	3 cut(s)	28, 43, 364
Eco130I	CCWWGG	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaiI	YATR	8 cut(s)	51, 60, 149, 193, 195, 467, 485, 497
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	119, 476
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	3 cut(s)	15, 182, 404
HinfI	GANTC	4 cut(s)	101, 143, 232, 321
HpaII	CCGG	3 cut(s)	15, 182, 404
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	125, 357, 369
Hpy188III	TCNNGA	3 cut(s)	15, 170, 236
HpyAV	CCTTC	3 cut(s)	89, 167, 288
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	28, 43, 364
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	10, 28, 149, 195, 249, 417
MaeI	CTAG	2 cut(s)	119, 476
MalI	GATC	3 cut(s)	30, 45, 366
MboI	GATC	3 cut(s)	28, 43, 364
MboII	GAAGA	2 cut(s)	23, 419
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	441
MspI	CCGG	3 cut(s)	15, 182, 404
MspR9I	CCNGG	2 cut(s)	183, 405
NciI	CCSGG	2 cut(s)	183, 405
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	28, 43, 364
NlaIV	GGNNCC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	101, 143, 232
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	28, 43, 364
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	183, 405
SetI	ASST	3 cut(s)	280, 331, 481
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	119, 476
StyD4I	CCNGG	2 cut(s)	181, 403
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	171, 324, 397
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	101, 143, 232
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	29, 89
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	29, 89
XapI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	119, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.