Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Forward (+)

535093 .. 536449

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000105

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAATATACCAGCTCCAAGAAAAGACCTCATGGTAGTCAATATGGGTCCCCACCATCCATCAATGCATGGTGTTCTTCGACTTATCATTACTCTAGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACCGAGGGATGGAAAAAATTGCGGAAAACCGAACAATTATACAATATTTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTCACAGAAGCAATAACGGTAAATGGACCGGAACAGCTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAATAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATCTGTTATGGCTCGGCCCTTTTATGGCGGATATTGGTGCACAGACTCCCTTTTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCTGCCACCGAACGAGTCGAGGGGGTAGGCATTATTGGTCGAGAGGAAGTAATAAATTGGGGTTTATCGGGACCAATGCTGCGAGCGTCCGGAATACAATGGGATCTTCGTAAAGTTGATCAGTATGAGTGTTATGACGAATTTGATTGGGAAGTACAGTGGCAAAAAGAAGGGGATTCGTTGGCTCGTTATCTAGTCCGAATTGGTGAAATGATGGAATCCATAAAAATTATTCAACAGGCTCTCGAAGGAATTCCGGGGGGGCCATATGAGAATTTAGAAACCCGATACTTTGATAGAGAAAGGAATCCAGAATGGAATGATTTTGAATATCGCTTTATTAGTAAAAAACCTTCTCCTACATTTGAATTGCCGAAACAAGAACTTTATGTGAGAGTCGAAGCTCCAAAAGGAGAGTTGGGGGTTTTTCTGATAGGGGATCGGAGTGGTTTTCCTTGGAGATGGAAAATTCGACCGCCGGGTTTTATCAATTTGCAAATTCTTCCTCAGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

343

Amino Acids

39.74

Weight (kDa)

5.21

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	149 - 342	4.8e-68	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	3 cut(s)	164, 368, 914
AclWI	GGATC	2 cut(s)	549, 885
AcsI	RAATTY	5 cut(s)	578, 690, 712, 906, 936
AfaI	GTAC	2 cut(s)	282, 594
AfiI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	278, 674, 767, 806
AluBI	AGCT	7 cut(s)	14, 221, 265, 297, 335, 440, 842
AluI	AGCT	7 cut(s)	14, 221, 265, 297, 335, 440, 842
Alw21I	GWGCWC	1 cut(s)	382
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	2 cut(s)	549, 885
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	2 cut(s)	355, 701
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	440, 517
ApoI	RAATTY	5 cut(s)	578, 690, 712, 906, 936
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	5 cut(s)	47, 254, 356, 509, 701
AsuC2I	CCSGG	2 cut(s)	696, 918
AsuHPI	GGTGA	2 cut(s)	113, 656
AsuII	TTCGAA	1 cut(s)	435
AvaII	GGWCC	3 cut(s)	47, 254, 509
BaeGI	GKGCMC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	775, 807
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	427, 504
BccI	CCATC	6 cut(s)	63, 67, 92, 145, 646, 894
BclI	TGATCA	1 cut(s)	556
BcnI	CCSGG	2 cut(s)	696, 918
BfaI	CTAG	3 cut(s)	95, 632, 989
BisI	GCNGC	2 cut(s)	441, 518
BlsI	GCNGC	2 cut(s)	442, 519
Bme1390I	CCNGG	2 cut(s)	696, 918
Bme18I	GGWCC	3 cut(s)	47, 254, 509
BmgT120I	GGNCC	5 cut(s)	47, 254, 356, 509, 701
BmiI	GGNNCC	4 cut(s)	48, 49, 510, 702
BmrFI	CCNGG	2 cut(s)	696, 918
Bpu14I	TTCGAA	1 cut(s)	435
BpuMI	CCSGG	2 cut(s)	696, 918
BsaJI	CCNNGG	3 cut(s)	145, 695, 893
BsaWI	WCCGGW	2 cut(s)	256, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 151, 364
BseAI	TCCGGA	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	145, 695, 893
BseGI	GGATG	2 cut(s)	55, 156
BseLI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
BseMII	CTCAG	1 cut(s)	959
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	427, 504
BseYI	CCCAGC	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	914
BshFI	GGCC	2 cut(s)	357, 703
BsiEI	CGRYCG	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	4 cut(s)	257, 528, 695, 917
BslFI	GGGAC	2 cut(s)	33, 522
BslI	CCNNNNNNNGG	3 cut(s)	131, 151, 364
BsmFI	GGGAC	2 cut(s)	33, 522
BsnI	GGCC	2 cut(s)	357, 703
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	427, 541, 556, 877, 1021
BspACI	CCGC	3 cut(s)	164, 368, 914
BspANI	GGCC	2 cut(s)	357, 703
BspCNI	CTCAG	1 cut(s)	958
BspEI	TCCGGA	1 cut(s)	527
BspLI	GGNNCC	4 cut(s)	48, 49, 510, 702
BspPI	GGATC	2 cut(s)	549, 885
BspT104I	TTCGAA	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	145, 695, 893
BssMI	GATC	5 cut(s)	427, 541, 556, 877, 1021
BssT1I	CCWWGG	1 cut(s)	893
Bst4CI	ACNGT	3 cut(s)	119, 247, 597
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	295, 522
BstDEI	CTNAG	1 cut(s)	945
BstF5I	GGATG	2 cut(s)	55, 156
BstKTI	GATC	5 cut(s)	430, 544, 559, 880, 1024
BstMBI	GATC	5 cut(s)	427, 541, 556, 877, 1021
BstMCI	CGRYCG	1 cut(s)	914
BstSCI	CCNGG	2 cut(s)	694, 916
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	427, 504
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	357, 703
BtsCI	GGATG	2 cut(s)	55, 156
BtsIMutI	CAGTG	1 cut(s)	602
Cac8I	GCNNGC	2 cut(s)	295, 522
Cfr13I	GGNCC	5 cut(s)	47, 254, 356, 509, 701
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	281, 593
CviAII	CATG	2 cut(s)	31, 68
CviQI	GTAC	2 cut(s)	281, 593
DdeI	CTNAG	1 cut(s)	945
DpnI	GATC	5 cut(s)	429, 543, 558, 879, 1023
DpnII	GATC	5 cut(s)	427, 541, 556, 877, 1021
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	893
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	3 cut(s)	47, 254, 509
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	893
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	893
FaeI	CATG	2 cut(s)	34, 71
FaqI	GGGAC	2 cut(s)	33, 522
FatI	CATG	2 cut(s)	30, 67
FauNDI	CATATG	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	2 cut(s)	441, 518
FokI	GGATG	2 cut(s)	42, 163
Fsp4HI	GCNGC	2 cut(s)	441, 518
FspBI	CTAG	3 cut(s)	95, 632, 989
GluI	GCNGC	2 cut(s)	441, 518
GsaI	CCCAGC	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	357, 703
HapII	CCGG	4 cut(s)	257, 528, 695, 917
HgaI	GACGC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	34, 71
HinfI	GANTC	7 cut(s)	325, 385, 453, 614, 656, 745, 834
HpaII	CCGG	4 cut(s)	257, 528, 695, 917
HphI	GGTGA	2 cut(s)	113, 656
Hpy166II	GTNNAC	3 cut(s)	122, 231, 380
Hpy188I	TCNGA	5 cut(s)	305, 407, 638, 870, 882
Hpy188III	TCNNGA	6 cut(s)	95, 479, 507, 528, 683, 749
Hpy8I	GTNNAC	3 cut(s)	122, 231, 380
HpyAV	CCTTC	3 cut(s)	602, 680, 801
HpyCH4III	ACNGT	3 cut(s)	119, 247, 597
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	67, 380, 934
HpyF3I	CTNAG	1 cut(s)	945
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	34, 71
KflI	GGGWCCC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	5 cut(s)	427, 541, 556, 877, 1021
LmnI	GCTCC	2 cut(s)	19, 847
LpnPI	CCDG	9 cut(s)	24, 251, 270, 307, 541, 662, 708, 762, 930
Lsp1109I	GCAGC	2 cut(s)	427, 504
MaeI	CTAG	3 cut(s)	95, 632, 989
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	429, 543, 558, 879, 1023
MboI	GATC	5 cut(s)	427, 541, 556, 877, 1021
MboII	GAAGA	4 cut(s)	68, 116, 536, 932
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	382
MlyI	GAGTC	4 cut(s)	334, 379, 462, 843
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	38, 140, 451, 475, 954
Mph1103I	ATGCAT	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	1 cut(s)	954
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	4 cut(s)	257, 528, 695, 917
MspR9I	CCNGG	2 cut(s)	696, 918
NciI	CCSGG	2 cut(s)	696, 918
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	5 cut(s)	427, 541, 556, 877, 1021
NlaIII	CATG	2 cut(s)	34, 71
NlaIV	GGNNCC	4 cut(s)	48, 49, 510, 702
NmeAIII	GCCGAG	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	614, 656, 745
PkrI	GCNGC	2 cut(s)	442, 519
PleI	GAGTC	4 cut(s)	333, 379, 461, 842
PpsI	GAGTC	4 cut(s)	333, 379, 461, 842
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	265
PspN4I	GGNNCC	4 cut(s)	48, 49, 510, 702
PspPI	GGNCC	5 cut(s)	47, 254, 356, 509, 701
PspPPI	RGGWCCY	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	282, 594
RsaNI	GTAC	2 cut(s)	281, 593
SaqAI	TTAA	1 cut(s)	954
SatI	GCNGC	2 cut(s)	441, 518
Sau3AI	GATC	5 cut(s)	427, 541, 556, 877, 1021
Sau96I	GGNCC	5 cut(s)	47, 254, 356, 509, 701
SchI	GAGTC	4 cut(s)	334, 379, 462, 843
ScrFI	CCNGG	2 cut(s)	696, 918
SduI	GDGCHC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	3 cut(s)	47, 254, 509
SsiI	CCGC	3 cut(s)	164, 368, 914
SspI	AATATT	3 cut(s)	129, 188, 274
SspMI	CTAG	3 cut(s)	95, 632, 989
StyD4I	CCNGG	2 cut(s)	694, 916
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	3 cut(s)	119, 247, 597
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	7 cut(s)	79, 435, 456, 478, 684, 837, 910
TatI	WGTACW	1 cut(s)	592
TfiI	GAWTC	3 cut(s)	614, 656, 745
Tru1I	TTAA	1 cut(s)	954
Tru9I	TTAA	1 cut(s)	954
TscAI	CASTG	1 cut(s)	602
TseI	GCWGC	2 cut(s)	440, 517
TspDTI	ATGAA	2 cut(s)	17, 977
TspRI	CASTG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	3 cut(s)	47, 254, 509
XapI	RAATTY	5 cut(s)	578, 690, 712, 906, 936
XbaI	TCTAGA	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	3 cut(s)	95, 632, 989
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.