Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Forward (+)

249381 .. 250250

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGGAGTTGAGTCGTATAGCTTCTCATCTGTTATGGCTCGGCCCTTTTATGGCGGATATTGGTGCACAGACTCCCTTTTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCTGCCACCGAACGAGTCGAGGGGGTAGGCATTATTGGTCGAGAGGAAGTAATAAATTGGGGTTTATCGGGACCAATGCTGCGAGCGTCCGGAATACAATGGGATCTTCGTAAAGTTGATCAGTATGAGTGTTATGACGAATTTGATTGGGAAGTACAGTGGCAAAAAGAAGGGGATTCGTTGGCTCGTTATCTAGTCCGAATTGGTGAAATGATGGAATCCATAAAAATTATTCAACAGGCTCTCGAAGGAATTCCGGGGGGGCCATATGAGAATTTAGAAACCCGATACTTTGATAGAGAAAGGAATCCAGAATGGAATGATTTTGAATATCGCTTTATTAGTAAAAAACCTTCTCCTACATTTGAATTGCCGAAACAAGAACTTTATGTGAGAGTCGAAGCTCCAAAAGGAGAGTTGGGGGTTTTTCTGATAGGGGATCGGAGTGGTTTTCCTTGGAGATGGAAAATTCGACCGCCGGGTTTTATCAATTTGCAAATTCTTCCTCAGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGTATAGATATCATTATGGGAGAAGTTGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

239

Amino Acids

27.87

Weight (kDa)

4.91

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	45 - 238	1.6e-68	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	2 cut(s)	56, 602
AclWI	GGATC	2 cut(s)	237, 573
AcsI	RAATTY	5 cut(s)	266, 378, 400, 594, 624
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	362, 455, 494
AluBI	AGCT	3 cut(s)	23, 128, 530
AluI	AGCT	3 cut(s)	23, 128, 530
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	237, 573
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	2 cut(s)	43, 389
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	2 cut(s)	128, 205
ApoI	RAATTY	5 cut(s)	266, 378, 400, 594, 624
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	3 cut(s)	44, 197, 389
AsuC2I	CCSGG	2 cut(s)	384, 606
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	115, 192
BccI	CCATC	2 cut(s)	334, 582
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	384, 606
BfaI	CTAG	2 cut(s)	320, 677
BisI	GCNGC	2 cut(s)	129, 206
BlsI	GCNGC	2 cut(s)	130, 207
Bme1390I	CCNGG	2 cut(s)	384, 606
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	44, 197, 389
BmiI	GGNNCC	2 cut(s)	198, 390
BmrFI	CCNGG	2 cut(s)	384, 606
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	384, 606
BsaJI	CCNNGG	2 cut(s)	383, 581
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
BseAI	TCCGGA	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	383, 581
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	647
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	115, 192
Bsh1285I	CGRYCG	1 cut(s)	602
BshFI	GGCC	2 cut(s)	45, 391
BsiEI	CGRYCG	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	216, 383, 605
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	45, 391
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	115, 229, 244, 565, 709
BspACI	CCGC	2 cut(s)	56, 602
BspANI	GGCC	2 cut(s)	45, 391
BspCNI	CTCAG	1 cut(s)	646
BspEI	TCCGGA	1 cut(s)	215
BspLI	GGNNCC	2 cut(s)	198, 390
BspPI	GGATC	2 cut(s)	237, 573
BspT104I	TTCGAA	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	383, 581
BssMI	GATC	5 cut(s)	115, 229, 244, 565, 709
BssT1I	CCWWGG	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	633
BstKTI	GATC	5 cut(s)	118, 232, 247, 568, 712
BstMBI	GATC	5 cut(s)	115, 229, 244, 565, 709
BstMCI	CGRYCG	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	382, 604
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	115, 192
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	45, 391
BtsIMutI	CAGTG	1 cut(s)	290
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	44, 197, 389
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	281
CviJI	RGCY	9 cut(s)	23, 40, 45, 128, 311, 368, 391, 530, 659
CviKI_1	RGCY	9 cut(s)	23, 40, 45, 128, 311, 368, 391, 530, 659
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	5 cut(s)	117, 231, 246, 567, 711
DpnII	GATC	5 cut(s)	115, 229, 244, 565, 709
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	691
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
FaqI	GGGAC	1 cut(s)	210
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	129, 206
Fsp4HI	GCNGC	2 cut(s)	129, 206
FspBI	CTAG	2 cut(s)	320, 677
GluI	GCNGC	2 cut(s)	129, 206
HaeIII	GGCC	2 cut(s)	45, 391
HapII	CCGG	3 cut(s)	216, 383, 605
HgaI	GACGC	1 cut(s)	201
HinfI	GANTC	7 cut(s)	13, 73, 141, 302, 344, 433, 522
HpaII	CCGG	3 cut(s)	216, 383, 605
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	4 cut(s)	95, 326, 558, 570
Hpy188III	TCNNGA	5 cut(s)	167, 195, 216, 371, 437
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	290, 368, 489
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	68, 622
HpyF3I	CTNAG	1 cut(s)	633
Kpn2I	TCCGGA	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	115, 229, 244, 565, 709
LmnI	GCTCC	1 cut(s)	535
LpnPI	CCDG	5 cut(s)	229, 350, 396, 450, 618
Lsp1109I	GCAGC	2 cut(s)	115, 192
MaeI	CTAG	2 cut(s)	320, 677
MalI	GATC	5 cut(s)	117, 231, 246, 567, 711
MboI	GATC	5 cut(s)	115, 229, 244, 565, 709
MboII	GAAGA	2 cut(s)	224, 620
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	70
MlyI	GAGTC	4 cut(s)	22, 67, 150, 531
MnlI	CCTC	3 cut(s)	139, 163, 642
MroI	TCCGGA	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	642
MspI	CCGG	3 cut(s)	216, 383, 605
MspR9I	CCNGG	2 cut(s)	384, 606
NciI	CCSGG	2 cut(s)	384, 606
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	115, 229, 244, 565, 709
NlaIV	GGNNCC	2 cut(s)	198, 390
NmeAIII	GCCGAG	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	3 cut(s)	302, 344, 433
PkrI	GCNGC	2 cut(s)	130, 207
PleI	GAGTC	4 cut(s)	21, 67, 149, 530
PpsI	GAGTC	4 cut(s)	21, 67, 149, 530
PspN4I	GGNNCC	2 cut(s)	198, 390
PspPI	GGNCC	3 cut(s)	44, 197, 389
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	642
SatI	GCNGC	2 cut(s)	129, 206
Sau3AI	GATC	5 cut(s)	115, 229, 244, 565, 709
Sau96I	GGNCC	3 cut(s)	44, 197, 389
SchI	GAGTC	4 cut(s)	22, 67, 150, 531
ScrFI	CCNGG	2 cut(s)	384, 606
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	25, 130, 481, 532, 682
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	1 cut(s)	197
SsiI	CCGC	2 cut(s)	56, 602
SspMI	CTAG	2 cut(s)	320, 677
StyD4I	CCNGG	2 cut(s)	382, 604
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	6 cut(s)	123, 144, 166, 372, 525, 598
TatI	WGTACW	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	302, 344, 433
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	1 cut(s)	290
TseI	GCWGC	2 cut(s)	128, 205
TspDTI	ATGAA	1 cut(s)	665
TspRI	CASTG	1 cut(s)	290
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	197
XapI	RAATTY	5 cut(s)	266, 378, 400, 594, 624
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	320, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.