pycom06g13440
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0008917
Physical Location & Seq
Reverse (-)
18438863 .. 18440444
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGTCGGCAATCCAACGGCAGTGCGCAGGGAGAAGAAGAAGACGACCAACCAATGCGTCAACAAATTCAATAGCATCAAATACTTATTCAAATCAAAGAACCAGTGATGAGAATGTGCTGAAGGCTATAAAGGGATACTACCGGATGCTTGAGTGTAATTTGGAAAAGTTACTTGAGCCAAACATAACATTGTTGAGGAGCCATGGTGTGCCAGAGTCACTGATTGTAAAGATTTTCATGATTCAGCCAAAAACACTGCTTCTGAGGAATGCAGTGCTCGGTGAGATTATTGGTCATGTTAAAGATTTGGGTTTTGAACCTAATAATCTGCTATTTGTTTTAGCTGTTCGGAGCATGGCAGTGATGAGTACGGCACTATGGGAGCAGAAGTTGGAAACTTATTCAAGTTTAGGTTTGTCGAAAGATGAGATTCTTGCAGCGTTCAGATCGCAACCCATGTGTATGATTACTTCGGTGAAGAAGATCCATCAATTGATGGATTTTTTCGTGAATAAGTTGAATTTGAAGCCGTCAACGGTTGCGAAGCATCCAAACCTTTTGCTGCTCAGCATGGAGAAGAGAATTCTTCCTAGGTGTTCGGTTCTGCAACTTTTATTGTCACAGGGGTTGATAAAGGAAGACATTAACTTCCCCTATGTGCTCAAACTGACCGAGAAGGCTTTCATGCGGAAGGTATTGAGCAAGTATGAACAAGTGGTTCCTGACATTGTCAAGGCAAATAAAGGCCAGATAGAATTTCAAGGGTTTCCAGTTCCCTTAATATGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

264

Amino Acids

29.87

Weight (kDa)

9.79

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 44 - 228 2.7e-19 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 25
AciI CCGC 1 cut(s) 688
AclWI GGATC 1 cut(s) 478
AcsI RAATTY 4 cut(s) 64, 520, 582, 755
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 7 cut(s) 69, 90, 317, 405, 520, 526, 761
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw21I GWGCWC 2 cut(s) 279, 663
AlwI GGATC 1 cut(s) 478
AoxI GGCC 1 cut(s) 745
ApeKI GCWGC 2 cut(s) 437, 562
ApoI RAATTY 4 cut(s) 64, 520, 582, 755
Asp700I GAANNNNTTC 1 cut(s) 680
AspA2I CCTAGG 1 cut(s) 590
AspLEI GCGC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 293, 487
AvrII CCTAGG 1 cut(s) 590
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
BbsI GAAGAC 2 cut(s) 46, 645
Bbv12I GWGCWC 2 cut(s) 279, 663
BbvI GCAGC 2 cut(s) 449, 549
BccI CCATC 2 cut(s) 490, 495
BceAI ACGGC 3 cut(s) 32, 387, 514
BciVI GTATCC 1 cut(s) 128
BfaI CTAG 1 cut(s) 591
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 2 cut(s) 438, 563
BlnI CCTAGG 1 cut(s) 590
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 2 cut(s) 439, 564
BmiI GGNNCC 2 cut(s) 200, 720
BmsI GCATC 3 cut(s) 83, 135, 556
BpiI GAAGAC 2 cut(s) 46, 645
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 170, 194
BsaJI CCNNGG 2 cut(s) 202, 590
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 374, 404
Bse1I ACTGG 2 cut(s) 102, 770
BseDI CCNNGG 2 cut(s) 202, 590
BseGI GGATG 2 cut(s) 150, 547
BseMII CTCAG 2 cut(s) 254, 580
BseNI ACTGG 2 cut(s) 102, 770
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 449, 549
BshFI GGCC 1 cut(s) 747
BsiHKAI GWGCWC 2 cut(s) 279, 663
BsiSI CCGG 1 cut(s) 142
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 1 cut(s) 747
Bsp1286I GDGCHC 2 cut(s) 279, 663
Bsp143I GATC 2 cut(s) 446, 483
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 688
BspANI GGCC 1 cut(s) 747
BspCNI CTCAG 2 cut(s) 255, 579
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 200, 720
BspPI GGATC 1 cut(s) 478
BsrI ACTGG 2 cut(s) 102, 770
BssECI CCNNGG 2 cut(s) 202, 590
BssMI GATC 2 cut(s) 446, 483
BssT1I CCWWGG 2 cut(s) 202, 590
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 572
BstDEI CTNAG 2 cut(s) 263, 566
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 2 cut(s) 150, 547
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 449, 486
BstMBI GATC 2 cut(s) 446, 483
BstV1I GCAGC 2 cut(s) 449, 549
BstV2I GAAGAC 2 cut(s) 46, 645
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 2 cut(s) 150, 547
BtsI GCAGTG 4 cut(s) 26, 254, 279, 366
BtsIMutI CAGTG 6 cut(s) 26, 109, 218, 254, 279, 366
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 26
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 369
CviAII CATG 7 cut(s) 203, 238, 296, 355, 457, 571, 685
CviJI RGCY 8 cut(s) 125, 178, 201, 247, 344, 529, 680, 747
CviKI_1 RGCY 8 cut(s) 125, 178, 201, 247, 344, 529, 680, 747
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 263, 566
DpnI GATC 2 cut(s) 448, 485
DpnII GATC 2 cut(s) 446, 483
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 202, 590
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 202, 590
ErhI CCWWGG 2 cut(s) 202, 590
FaeI CATG 7 cut(s) 206, 241, 299, 358, 460, 574, 688
FatI CATG 7 cut(s) 202, 237, 295, 354, 456, 570, 684
Fnu4HI GCNGC 2 cut(s) 438, 563
FokI GGATG 2 cut(s) 157, 534
Fsp4HI GCNGC 2 cut(s) 438, 563
FspBI CTAG 1 cut(s) 591
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 438, 563
HaeIII GGCC 1 cut(s) 747
HapII CCGG 1 cut(s) 142
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 26
Hin1II CATG 7 cut(s) 206, 241, 299, 358, 460, 574, 688
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 2 cut(s) 60, 534
HindII GTYRAC 2 cut(s) 60, 534
HinfI GANTC 3 cut(s) 215, 241, 430
HpaII CCGG 1 cut(s) 142
HphI GGTGA 2 cut(s) 293, 487
Hpy166II GTNNAC 2 cut(s) 60, 534
Hpy188I TCNGA 3 cut(s) 264, 351, 446
Hpy188III TCNNGA 3 cut(s) 238, 508, 722
Hpy8I GTNNAC 2 cut(s) 60, 534
HpyAV CCTTC 3 cut(s) 115, 670, 685
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4V TGCA 4 cut(s) 272, 437, 607, 786
HpyF3I CTNAG 2 cut(s) 263, 566
Hsp92II CATG 7 cut(s) 206, 241, 299, 358, 460, 574, 688
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 2 cut(s) 446, 483
LmnI GCTCC 3 cut(s) 198, 351, 382
LpnPI CCDG 8 cut(s) 12, 115, 155, 225, 608, 735, 761, 783
Lsp1109I GCAGC 2 cut(s) 449, 549
LweI GCATC 3 cut(s) 83, 135, 556
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 3 cut(s) 168, 216, 618
MalI GATC 2 cut(s) 448, 485
MboI GATC 2 cut(s) 446, 483
MboII GAAGA 8 cut(s) 45, 48, 51, 490, 493, 578, 589, 650
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 279, 663
MluCI AATT 6 cut(s) 64, 157, 491, 520, 582, 755
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 37, 372
MnlI CCTC 2 cut(s) 189, 258
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 3 cut(s) 300, 645, 779
MslI CAYNNNNRTG 2 cut(s) 359, 461
MspI CCGG 1 cut(s) 142
MunI CAATTG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 202
NdeII GATC 2 cut(s) 446, 483
NlaIII CATG 7 cut(s) 206, 241, 299, 358, 460, 574, 688
NlaIV GGNNCC 2 cut(s) 200, 720
NmuCI GTSAC 2 cut(s) 216, 618
NsbI TGCGCA 1 cut(s) 25
PagI TCATGA 1 cut(s) 237
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 241, 430
PflFI GACNNNGTC 1 cut(s) 728
PkrI GCNGC 2 cut(s) 439, 564
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 200, 720
PsuI RGATCY 1 cut(s) 483
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 359, 461
SaqAI TTAA 3 cut(s) 300, 645, 779
SatI GCNGC 2 cut(s) 438, 563
Sau3AI GATC 2 cut(s) 446, 483
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 2 cut(s) 279, 663
SetI ASST 6 cut(s) 322, 346, 415, 558, 596, 696
SfaNI GCATC 3 cut(s) 83, 135, 556
SmiMI CAYNNNNRTG 2 cut(s) 359, 461
SmlI CTYRAG 2 cut(s) 149, 173
SmoI CTYRAG 2 cut(s) 149, 173
Sse9I AATT 6 cut(s) 64, 157, 491, 520, 582, 755
SsiI CCGC 1 cut(s) 688
SspMI CTAG 1 cut(s) 591
StyI CCWWGG 2 cut(s) 202, 590
TaaI ACNGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 419
TaqII GACCGA 1 cut(s) 686
TasI AATT 6 cut(s) 64, 157, 491, 520, 582, 755
TfiI GAWTC 2 cut(s) 241, 430
Tru1I TTAA 3 cut(s) 300, 645, 779
Tru9I TTAA 3 cut(s) 300, 645, 779
TscAI CASTG 6 cut(s) 26, 109, 225, 261, 279, 366
TseFI GTSAC 2 cut(s) 216, 618
TseI GCWGC 2 cut(s) 437, 562
Tsp45I GTSAC 2 cut(s) 216, 618
TspDTI ATGAA 3 cut(s) 226, 673, 723
TspRI CASTG 6 cut(s) 26, 109, 225, 261, 279, 366
Tth111I GACNNNGTC 1 cut(s) 728
XapI RAATTY 4 cut(s) 64, 520, 582, 755
XmaJI CCTAGG 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.