pycom07g04110

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003538
Physical Location & Seq
Forward (+)
3545159 .. 3548396
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1422 bp
ATGACTGTCAGCAAACAAGACGTGAAAAAGAAGCAGTCTACTCCGGCAGTTGACATTCAATCTACAAGTGAGACAGGGTCTCAAATGCCTGCTGGTCAATACGCTCAGTCCTTTCGGGTTTTTGTAGCGACATGGAATGTAGGAGGAAAATCTCCTCATATTGGCCTTAATCTGGATGATTTTCTTCAAGTTTATAATGAATCAGACATATATGTCTTGGGTTTTCAGGAAATTGTTCCGTTAAATGCTGGAAATGTGCTAGTTCTAGATAAAAATGAACCTGCAGCAAAATGGCTTGCTTTAATCAATCAGTCACTAAACAAATCACCTGAGGGGTGTTCAACAAGCAAATCCAGCCTAGGTGGTTCGCGATTTTCATCAAAGCCTTCCCTTAAAAAGGTCAGTAAGGCTTTTAGGACAGAGAGCAAACGGAGGTTGAAGAGTTGCAACTGCCCTTTTGAACTAGAGAGGAAATACAGTAAAGATTTTTGTTTTAGATGCCAACAACCAAACATAAGCGAAGACGACCTTTCTTCAGAACCAGATGAGGACGGATCTAATGTCCTTGATATATCAGAAATTTCCATGACCTCTACTACCAACCAAATGAAGTACAGCCTTATAGCAAGTAAGCAAATGGTAGGAATTTTCGTGACTATTTGGGCGAGGAAACAGTGTATACAATATGTTAGCCACTTGAGAATCTCTTGCATCAGTCGTGGGATCATGGGATGCCTTGGAAACAAGGGCTGTATATCTGTGAGCTTTTTATTCCATCAGACAAGCTTTTGCTTTGTCTGCAGTCATTTGGCATCTGGTGAGAAGGAGGGCGATGAGCTTAGGAGAAATTTGGATGTATTAGAGATACTTAAAAGCACTCAGTTTCAGAAGATCTGCAAAACGGCTCATAGTAGGATGCCGGATAAAATTCTAGGACATGATATGGTCATATGGTTAGGAGACTTGAATTACCGCATTGCTTTGAGCTACTCTGAAACCCGAAAGCTTTTGGTGGACAATGACTGGGATGCACTTCTTGACAAAGACCAGCTCAAAACTGAGAGAGAAGCAGGGCGAGTATTCAAAGGATGGAAGGAGGGAAAAATCTACTTTGCACCTACTTACAAATACTTTTATAACTCAGACACTTATTTCGGAGAGATAAAAACATCGAAAAAGAAAAGAAGAACACCAGCCTGGTGTGACAGAATACTATGGCATGGAAATGGGATTAGACAACTTACTTACATAAGGGGAGAGTCCCGGTTCTCTGACCATCGGCCAGTGTGTGCAACATTTTGTGTGGATGCTGTAGTTAATGAGAATGAAACGAAGAAGGGATCACCTAGCTCTAATATGAAAATCGAAATTGAAGAGCTCTTACCAACTGCGAGATACCTGAACAACATTACTAAGGTGTAA

Protein Analysis

474

Amino Acids

53.59

Weight (kDa)

8.97

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 200 - 431 3.1e-63 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 1137
AasI GACNNNNNNGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 289
AccI GTMKAC 2 cut(s) 38, 679
AccII CGCG 1 cut(s) 370
AciI CCGC 1 cut(s) 973
AclWI GGATC 3 cut(s) 562, 731, 1348
AcoI YGGCCR 1 cut(s) 1280
AcsI RAATTY 4 cut(s) 579, 645, 847, 927
AcuI CTGAAG 1 cut(s) 519
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 397
AgsI TTSAA 8 cut(s) 59, 188, 342, 439, 461, 967, 1084, 1373
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 1196
AluBI AGCT 8 cut(s) 765, 786, 838, 987, 1006, 1051, 1350, 1378
AluI AGCT 8 cut(s) 765, 786, 838, 987, 1006, 1051, 1350, 1378
Alw21I GWGCWC 1 cut(s) 1380
Alw26I GTCTC 3 cut(s) 65, 84, 954
AlwI GGATC 3 cut(s) 562, 731, 1348
AoxI GGCC 2 cut(s) 163, 1280
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 4 cut(s) 579, 645, 847, 927
ArsI GACNNNNNNTTYG 2 cut(s) 1136, 1168
Asp700I GAANNNNTTC 1 cut(s) 234
AspA2I CCTAGG 1 cut(s) 358
AsuC2I CCSGG 1 cut(s) 1264
AsuHPI GGTGA 3 cut(s) 318, 830, 1335
AvrII CCTAGG 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 330
BanII GRGCYC 1 cut(s) 1380
BarI GAAGNNNNNNTAC 2 cut(s) 1365, 1397
BbsI GAAGAC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 1380
BbvI GCAGC 1 cut(s) 296
BccI CCATC 3 cut(s) 783, 1083, 1284
BceAI ACGGC 1 cut(s) 918
BciT130I CCWGG 1 cut(s) 1198
BcnI CCSGG 1 cut(s) 1264
BcoDI GTCTC 3 cut(s) 65, 84, 954
BfaI CTAG 6 cut(s) 260, 266, 359, 464, 932, 1347
BfmI CTRYAG 3 cut(s) 282, 799, 1311
BfuAI ACCTGC 1 cut(s) 289
BglII AGATCT 1 cut(s) 891
BisI GCNGC 1 cut(s) 285
BlnI CCTAGG 1 cut(s) 358
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 1198, 1264
BmgBI CACGTC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 1198, 1264
BmrI ACTGGG 1 cut(s) 1033
BmsI GCATC 7 cut(s) 488, 720, 722, 821, 906, 1018, 1297
BmuI ACTGGG 1 cut(s) 1033
BpiI GAAGAC 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 1264
BsaBI GATNNNNATC 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 358, 736
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 397
Bse1I ACTGG 2 cut(s) 1028, 1283
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 975
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 1198
BseDI CCNNGG 2 cut(s) 358, 736
BseGI GGATG 7 cut(s) 181, 737, 859, 921, 1033, 1094, 1312
BseJI GATNNNNATC 1 cut(s) 376
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 397
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 5 cut(s) 119, 321, 893, 1050, 1155
BseNI ACTGG 2 cut(s) 1028, 1283
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 2 cut(s) 165, 1282
BsiHKAI GWGCWC 1 cut(s) 1380
BsiSI CCGG 3 cut(s) 44, 920, 1264
BslFI GGGAC 1 cut(s) 1246
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 397
BsmAI GTCTC 3 cut(s) 65, 84, 954
BsmFI GGGAC 1 cut(s) 1246
BsnI GGCC 2 cut(s) 165, 1282
Bso31I GGTCTC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 1380
Bsp143I GATC 4 cut(s) 554, 723, 891, 1340
Bsp68I TCGCGA 1 cut(s) 370
BspACI CCGC 1 cut(s) 973
BspANI GGCC 2 cut(s) 165, 1282
BspCNI CTCAG 5 cut(s) 118, 322, 892, 1051, 1154
BspFNI CGCG 1 cut(s) 370
BspMAI CTGCAG 2 cut(s) 286, 803
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 3 cut(s) 562, 731, 1348
BspQI GCTCTTC 1 cut(s) 1368
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 975
BsrI ACTGG 2 cut(s) 1028, 1283
BssECI CCNNGG 2 cut(s) 358, 736
BssMI GATC 4 cut(s) 554, 723, 891, 1340
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 358, 736
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 1198
Bst4CI ACNGT 3 cut(s) 7, 479, 675
Bst6I CTCTTC 2 cut(s) 434, 1368
BstC8I GCNNGC 2 cut(s) 90, 297
BstDEI CTNAG 7 cut(s) 105, 330, 839, 879, 1059, 1141, 1413
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 7 cut(s) 181, 737, 859, 921, 1033, 1094, 1312
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 4 cut(s) 557, 726, 894, 1343
BstMAI GTCTC 3 cut(s) 65, 84, 954
BstMBI GATC 4 cut(s) 554, 723, 891, 1340
BstMWI GCNNNNNNNGC 2 cut(s) 354, 798
BstNI CCWGG 1 cut(s) 1198
BstSCI CCNGG 2 cut(s) 1196, 1262
BstSFI CTRYAG 3 cut(s) 282, 799, 1311
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 2 cut(s) 554, 891
BstYI RGATCY 2 cut(s) 554, 891
BstZ17I GTATAC 1 cut(s) 680
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 2 cut(s) 165, 1282
BtgZI GCGATG 1 cut(s) 846
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 7 cut(s) 181, 737, 859, 921, 1033, 1094, 1312
BtsIMutI CAGTG 2 cut(s) 680, 1290
BtuMI TCGCGA 1 cut(s) 370
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 90, 297
Csp6I GTAC 1 cut(s) 613
CviAII CATG 5 cut(s) 132, 586, 727, 938, 1220
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 7 cut(s) 105, 330, 839, 879, 1059, 1141, 1413
DpnI GATC 4 cut(s) 556, 725, 893, 1342
DpnII GATC 4 cut(s) 554, 723, 891, 1340
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 1280
Eam1104I CTCTTC 2 cut(s) 434, 1368
EarI CTCTTC 2 cut(s) 434, 1368
Ecl136II GAGCTC 1 cut(s) 1378
Eco130I CCWWGG 2 cut(s) 358, 736
Eco24I GRGCYC 1 cut(s) 1380
Eco31I GGTCTC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 1378
Eco57I CTGAAG 1 cut(s) 519
Eco81I CCTNAGG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 1378
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 1196
EcoT14I CCWWGG 2 cut(s) 358, 736
EcoT38I GRGCYC 1 cut(s) 1380
ErhI CCWWGG 2 cut(s) 358, 736
FaeI CATG 5 cut(s) 135, 589, 730, 941, 1223
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FaqI GGGAC 1 cut(s) 1246
FatI CATG 5 cut(s) 131, 585, 726, 937, 1219
FauNDI CATATG 1 cut(s) 950
FblI GTMKAC 2 cut(s) 38, 679
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 7 cut(s) 188, 744, 866, 928, 1040, 1101, 1319
FriOI GRGCYC 1 cut(s) 1380
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 6 cut(s) 260, 266, 359, 464, 932, 1347
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 165, 1282
HapII CCGG 3 cut(s) 44, 920, 1264
Hin1II CATG 5 cut(s) 135, 589, 730, 941, 1223
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 2 cut(s) 784, 1004
HinfI GANTC 3 cut(s) 200, 702, 1259
HpaII CCGG 3 cut(s) 44, 920, 1264
HphI GGTGA 3 cut(s) 318, 830, 1335
Hpy166II GTNNAC 4 cut(s) 39, 52, 680, 1015
Hpy188I TCNGA 9 cut(s) 205, 538, 577, 780, 888, 994, 1144, 1157, 1273
Hpy188III TCNNGA 6 cut(s) 173, 227, 266, 369, 652, 1037
Hpy8I GTNNAC 4 cut(s) 39, 52, 680, 1015
HpyAV CCTTC 4 cut(s) 396, 817, 1087, 1330
HpyCH4III ACNGT 3 cut(s) 7, 479, 675
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 8 cut(s) 284, 447, 711, 801, 897, 1031, 1115, 1292
HpyF10VI GCNNNNNNNGC 2 cut(s) 354, 798
HpyF3I CTNAG 7 cut(s) 105, 330, 839, 879, 1059, 1141, 1413
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 5 cut(s) 135, 589, 730, 941, 1223
Kzo9I GATC 4 cut(s) 554, 723, 891, 1340
LguI GCTCTTC 1 cut(s) 1368
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 7 cut(s) 488, 720, 722, 821, 906, 1018, 1297
MaeI CTAG 6 cut(s) 260, 266, 359, 464, 932, 1347
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 312, 652, 1202
MalI GATC 4 cut(s) 556, 725, 893, 1342
MboI GATC 4 cut(s) 554, 723, 891, 1340
MboII GAAGA 8 cut(s) 176, 451, 525, 533, 901, 1197, 1345, 1385
MflI RGATCY 2 cut(s) 554, 891
MhlI GDGCHC 1 cut(s) 1380
MluCI AATT 7 cut(s) 231, 579, 645, 847, 927, 967, 1368
MlyI GAGTC 1 cut(s) 1268
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 6 cut(s) 168, 242, 302, 393, 870, 1317
MslI CAYNNNNRTG 1 cut(s) 1224
MspI CCGG 3 cut(s) 44, 920, 1264
MspR9I CCNGG 2 cut(s) 1198, 1264
MvaI CCWGG 1 cut(s) 1198
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 354, 798
NciI CCSGG 1 cut(s) 1264
NdeI CATATG 1 cut(s) 950
NdeII GATC 4 cut(s) 554, 723, 891, 1340
NlaIII CATG 5 cut(s) 135, 589, 730, 941, 1223
NmuCI GTSAC 3 cut(s) 312, 652, 1202
NruI TCGCGA 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 1368
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 200, 702
PflFI GACNNNGTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 1267
PsiI TTATAA 2 cut(s) 195, 1137
Psp124BI GAGCTC 1 cut(s) 1380
Psp6I CCWGG 1 cut(s) 1196
PspGI CCWGG 1 cut(s) 1196
PstI CTGCAG 2 cut(s) 286, 803
PsuI RGATCY 2 cut(s) 554, 891
PsyI GACNNNGTC 1 cut(s) 76
RruI TCGCGA 1 cut(s) 370
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 1 cut(s) 1224
SacI GAGCTC 1 cut(s) 1380
SapI GCTCTTC 1 cut(s) 1368
SaqAI TTAA 6 cut(s) 168, 242, 302, 393, 870, 1317
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 4 cut(s) 554, 723, 891, 1340
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 2 cut(s) 1198, 1264
SduI GDGCHC 1 cut(s) 1380
SfaNI GCATC 7 cut(s) 488, 720, 722, 821, 906, 1018, 1297
SfcI CTRYAG 3 cut(s) 282, 799, 1311
SmiMI CAYNNNNRTG 1 cut(s) 1224
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
Sse9I AATT 7 cut(s) 231, 579, 645, 847, 927, 967, 1368
SsiI CCGC 1 cut(s) 973
SspMI CTAG 6 cut(s) 260, 266, 359, 464, 932, 1347
SstI GAGCTC 1 cut(s) 1380
StyD4I CCNGG 2 cut(s) 1196, 1262
StyI CCWWGG 2 cut(s) 358, 736
TaaI ACNGT 3 cut(s) 7, 479, 675
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 1172, 1365
TasI AATT 7 cut(s) 231, 579, 645, 847, 927, 967, 1368
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 2 cut(s) 200, 702
Tru1I TTAA 6 cut(s) 168, 242, 302, 393, 870, 1317
Tru9I TTAA 6 cut(s) 168, 242, 302, 393, 870, 1317
TscAI CASTG 2 cut(s) 680, 1290
TseFI GTSAC 3 cut(s) 312, 652, 1202
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 3 cut(s) 312, 652, 1202
TspDTI ATGAA 6 cut(s) 213, 291, 366, 623, 1341, 1373
TspGWI ACGGA 3 cut(s) 228, 445, 567
TspRI CASTG 2 cut(s) 680, 1290
Tth111I GACNNNGTC 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 4 cut(s) 579, 645, 847, 927
XbaI TCTAGA 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 358
XmiI GTMKAC 2 cut(s) 38, 679
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 6 cut(s) 260, 266, 359, 464, 932, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.