Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003871

Physical Location & Seq

Genomic Coordinates Forward (+)

23579714 .. 23583554

Gene Structure 3841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGTTATTCCACAAAAGTAAACATACTCCTCCACCCTCTCCTCGTCCTGATCCTCCTCCTCCCATCATGTCCTCCCCCTCAAGGTGGAACATCAACCCCAACAACAACACTAATGGCGGCATTACGGAGGCCTACGACAACGACGACGCAATCTTCAACTCAAAAGAATGCTACGCTTGCACTCAGGTCGGTGTCCCCGTCTTCCACTCCACCCGCTGCGACCCGATCCACCAGCCCCACCTCCAGTGGGAGCGCTCTGCCGGGTCCTCCATGACCCGAGTCCACACCCCCACAACCCTCAACTGCGGCCCCCACGACCTGACCGGGACGCGCGCCATTGACCCACGTAGCCAAAACGTCAAAAGGTGGAACCGCGCAGTCCTCATGGCACGGGGCATGTCGGTGGCCGTAGATCCGCTCTTCTTTTACGTCATCGCGCTGAGCCAGCGCGGTGGGCCCTGTTTTTACATGGACGTGGCGCTGGCGCTCGTTGTGACTCTGGTGAGGACGTGTTTGGATGCGTTGCACCTGGCCCACATCTTGCTTCAGTTTAAGTTGGCTTACGTGTCGAGTGAGTCGATGGTTATTGGCTGCGGGAAGCTCGTGTGGGACTCTGGTGAGATTGCGTGTCACTATATGCGGTCCCTCAAGGGGTTTTGGCTCGATGCTTTTGTCATTCTTCCAATTCCTCAGGCAGTAATTTGGTTAATTGTGCCAAAACTGTTTATACAAGAACAGACAAGACTAATCATGACGACCCTTTTACTAACCTTCTCGTTTCAGTTCATCCCCAAGCTCTACCACAGTGTTTACTTGGCCAAAAGACTCAAAAGGGTCACAGGTTACATATTTGCCTATGGCAACATTTGGTGGCGTTTTAAACTTAACTTCATTGCCTACTTAACTGCCGCTCATGTGCGATGTTGGTATGTCCTTGCAACACAACGTGTAATGTCGTGCTTCCAACAACAGTGTGACAGAAGTATAAACTGCAATCTCTCTATCTATTGCTCCAAGGAAATATTTTCCAATGGAAAGTTTTCTGGTGGTAATGCATTCACAAAGATAAAGACATTGTGCTTGGATAAAGACACACCATTCAAGTATGGTATTTACCAGCCGCTACTTGATGTCTACGCCGGCAATACACTTGCTGTGAGGATCCTTTATCCCATATACTGGGGTTTAATTAATCTCGGGGGTTTTTATACAAGTGAATATATAGTACTTAATGTACAGATCGATCAAGAACTTGATTGTGTAATTGTGCAGATATTTCTGCACATGGTGATGGCAAATAAGAAAAAAATGCAGCTGAAATATCGAGACATGGAATGGTGGATGCAACGAAGGCAGTTGCCGTCTCATTTGAGAAAGAGGGCTCGCTATTTCCAGCGCCACAGTTGGGCTGCCATGCAAGGCCAAGATGAGCTTGAATTGATCCAACATTTCCCGGATGGCCTTCGCCGGGACATTAAGCGATACATTTGCCTAGATCTTGTGAAGAAGGTAATTAGAGAAGGGGACCCAGTACAAAGAATGATGTTCATAGTTCATGGACGAATAAAACGTAGCCAAGGCCTGAGCAAAGGGTTCCTAGCCACCAGTGTACTCGAACCGGGCAGTTTCTTTGGTGATGAACTTCTCTCATGGTGCCTTCGCCGCCCATTTCTCGGCCGCCTTCCTCCCTCCTCGGCAACATTTACTTGCCTGGAACCTATGGAAGCATTTGGTTTAGATGCAGATTGTCTCCGCTACATCACCGACCATTTTCGTTACAAGTTTTTGAACGAAGAACTCAGGTGGACAGCGAGGTTTTACTCATCGAATTGGAGAACATGGGCGGCGGTGATCATTCAACTTGCTTGGCGCCGGCATAGAATGAGGACGAAGGGTCTGGTGGTGGTGCAAAATGGGGACATTGAGAATCGGTTGAGGCATTACGCTGCCTTCTTTTTGTCATTGAAGCCGCATGACCATCTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0005215 GO:0005216 GO:0005217 GO:0005221 GO:0005222 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007263 GO:0008150 GO:0008219 GO:0008324 GO:0009626 GO:0009987 GO:0012501 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0019932 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0033554 GO:0034050 GO:0034220 GO:0035556 GO:0042391 GO:0043855 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070509 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0099094

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

663

Amino Acids

76.8

Weight (kDa)

9.48

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	504 - 585	8.4e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15410 AT5G15410
fragaria_vesca	FvH4_6g47520 FvH4_6g47520 FvH4_7g26890
malus_domestica	MD07G1248200.v1.1 MD09G1061000.v1.1 MD17G1056400.v1.1
prunus_persica	Prupe.2G272100_v2.0.a1 Prupe.3G259100_v2.0.a1
pyrus_communis	pycom07g22190 pycom111g05130 pycom17g05550
rosa_chinensis	RchiOBHm_Chr1g0373561 RchiOBHm_Chr2g0166581
rosa_laevigata	RLG00000021630 RLG00000026815
rosa_multiflora	Rmu_sc0002860.1_g000003 Rmu_sc0008222.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084740 Rroxscaffold_4G00284140
rosa_rugosa	Rorug01G0378300 Rorug02G0524300 Rorug02G0524400
rosa_samantha	Rh1AG387700 Rh1BG352000 Rh1CG364700 Rh1DG382400 Rh2AG590200 Rh2BG602300 Rh2CG573000 Rh2DG612900
rosa_wichuraiana	Rw1G034770 Rw2G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1653, 1869
AccB7I	CCANNNNNTGG	1 cut(s)	1179
AccBSI	CCGCTC	2 cut(s)	418, 911
AccI	GTMKAC	1 cut(s)	1134
AccII	CGCG	5 cut(s)	331, 333, 375, 437, 450
AclWI	GGATC	6 cut(s)	44, 220, 407, 1156, 1169, 1435
AcoI	YGGCCR	3 cut(s)	405, 816, 1675
AcuI	CTGAAG	1 cut(s)	530
AcyI	GRCGYC	1 cut(s)	1870
AdeI	CACNNNGTG	2 cut(s)	947, 1288
AfaI	GTAC	4 cut(s)	1227, 1236, 1533, 1611
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	8 cut(s)	81, 84, 247, 651, 1179, 1405, 1468, 1673
AflIII	ACRYGT	3 cut(s)	509, 564, 946
AgsI	TTSAA	6 cut(s)	157, 1102, 1436, 1789, 1859, 1966
AhdI	GACNNNNNGTC	1 cut(s)	1893
AjiI	CACGTC	2 cut(s)	475, 510
AjnI	CCWGG	2 cut(s)	528, 1710
AluBI	AGCT	4 cut(s)	601, 796, 1315, 1432
AluI	AGCT	4 cut(s)	601, 796, 1315, 1432
Alw26I	GTCTC	3 cut(s)	1320, 1368, 1754
AlwI	GGATC	6 cut(s)	44, 220, 407, 1156, 1169, 1435
Ama87I	CYCGRG	2 cut(s)	276, 1196
Aor51HI	AGCGCT	1 cut(s)	254
ApaI	GGGCCC	1 cut(s)	459
ApeKI	GCWGC	5 cut(s)	216, 591, 1312, 1409, 1946
AseI	ATTAAT	1 cut(s)	1191
Asp700I	GAANNNNTTC	1 cut(s)	1039
AspS9I	GGNCC	7 cut(s)	264, 308, 455, 456, 532, 642, 1525
AsuC2I	CCSGG	5 cut(s)	262, 325, 1454, 1469, 1620
AsuHPI	GGTGA	6 cut(s)	514, 629, 1300, 1646, 1753, 1861
AvaI	CYCGRG	2 cut(s)	276, 1196
AvaII	GGWCC	3 cut(s)	264, 642, 1525
AxyI	CCTNAGG	1 cut(s)	690
BaeGI	GKGCMC	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	818
BamHI	GGATCC	1 cut(s)	1161
BanI	GGYRCC	2 cut(s)	1653, 1869
BanII	GRGCYC	2 cut(s)	459, 1384
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	5 cut(s)	203, 578, 1324, 1396, 1933
BccI	CCATC	5 cut(s)	71, 574, 1285, 1451, 1986
BceAI	ACGGC	2 cut(s)	392, 1345
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 1470, 1504
BciT130I	CCWGG	2 cut(s)	530, 1712
BclI	TGATCA	1 cut(s)	1851
BcnI	CCSGG	5 cut(s)	262, 325, 1454, 1469, 1620
BcoDI	GTCTC	3 cut(s)	1320, 1368, 1754
BfaI	CTAG	2 cut(s)	1493, 1598
BfoI	RGCGCY	5 cut(s)	256, 482, 488, 1399, 1873
BglII	AGATCT	1 cut(s)	1495
BlpI	GCTNAGC	1 cut(s)	440
BmcAI	AGTACT	1 cut(s)	1227
Bme1390I	CCNGG	7 cut(s)	262, 325, 530, 1454, 1469, 1620, 1712
Bme18I	GGWCC	3 cut(s)	264, 642, 1525
BmeRI	GACNNNNNGTC	1 cut(s)	1893
BmeT110I	CYCGRG	2 cut(s)	276, 1196
BmgBI	CACGTC	2 cut(s)	475, 510
BmgT120I	GGNCC	7 cut(s)	264, 308, 455, 456, 532, 642, 1525
BmrFI	CCNGG	7 cut(s)	262, 325, 530, 1454, 1469, 1620, 1712
BmrI	ACTGGG	2 cut(s)	1189, 1523
BmsI	GCATC	4 cut(s)	508, 655, 1332, 1729
BmuI	ACTGGG	2 cut(s)	1189, 1523
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	1583
Bpu1102I	GCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	2 cut(s)	64, 632
BpuMI	CCSGG	5 cut(s)	262, 325, 1454, 1469, 1620
Bsa29I	ATCGAT	1 cut(s)	1242
BsaAI	YACGTR	2 cut(s)	347, 565
BsaHI	GRCGYC	1 cut(s)	1870
BsaJI	CCNNGG	3 cut(s)	1014, 1576, 1692
Bsc4I	CCNNNNNNNGG	8 cut(s)	81, 84, 247, 651, 1179, 1405, 1468, 1673
Bse118I	RCCGGY	2 cut(s)	1139, 1872
Bse1I	ACTGG	4 cut(s)	244, 1184, 1529, 1605
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	530, 1712
BseCI	ATCGAT	1 cut(s)	1242
BseDI	CCNNGG	3 cut(s)	1014, 1576, 1692
BseGI	GGATG	4 cut(s)	523, 786, 1347, 1462
BseLI	CCNNNNNNNGG	8 cut(s)	81, 84, 247, 651, 1179, 1405, 1468, 1673
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	5 cut(s)	197, 431, 704, 1574, 1813
BseNI	ACTGG	4 cut(s)	244, 1184, 1529, 1605
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	5 cut(s)	18, 30, 45, 48, 1681
BseSI	GKGCMC	1 cut(s)	459
BseX3I	CGGCCG	1 cut(s)	1675
BseXI	GCAGC	5 cut(s)	203, 578, 1324, 1396, 1933
BsgI	GTGCAG	2 cut(s)	1265, 1289
Bsh1236I	CGCG	5 cut(s)	331, 333, 375, 437, 450
Bsh1285I	CGRYCG	1 cut(s)	1678
BshNI	GGYRCC	2 cut(s)	1653, 1869
BshVI	ATCGAT	1 cut(s)	1242
BsiEI	CGRYCG	1 cut(s)	1678
BsiHKCI	CYCGRG	2 cut(s)	276, 1196
BsiSI	CCGG	7 cut(s)	261, 324, 1140, 1454, 1468, 1619, 1873
BslFI	GGGAC	7 cut(s)	179, 340, 623, 628, 1484, 1538, 1931
BslI	CCNNNNNNNGG	8 cut(s)	81, 84, 247, 651, 1179, 1405, 1468, 1673
BsmAI	GTCTC	3 cut(s)	1320, 1368, 1754
BsmBI	CGTCTC	1 cut(s)	1368
BsmFI	GGGAC	7 cut(s)	179, 340, 623, 628, 1484, 1538, 1931
BsmI	GAATGC	2 cut(s)	173, 1055
BsoBI	CYCGRG	2 cut(s)	276, 1196
Bsp120I	GGGCCC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	459, 1384
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
Bsp1720I	GCTNAGC	1 cut(s)	440
BspCNI	CTCAG	5 cut(s)	196, 432, 703, 1575, 1812
BspDI	ATCGAT	1 cut(s)	1242
BspFNI	CGCG	5 cut(s)	331, 333, 375, 437, 450
BspHI	TCATGA	1 cut(s)	750
BspPI	GGATC	6 cut(s)	44, 220, 407, 1156, 1169, 1435
BspQI	GCTCTTC	1 cut(s)	425
BspT107I	GGYRCC	2 cut(s)	1653, 1869
BsrBI	CCGCTC	2 cut(s)	418, 911
BsrDI	GCAATG	1 cut(s)	891
BsrFI	RCCGGY	2 cut(s)	1139, 1872
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	4 cut(s)	244, 1184, 1529, 1605
BssAI	RCCGGY	2 cut(s)	1139, 1872
BssECI	CCNNGG	3 cut(s)	1014, 1576, 1692
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
BssNI	GRCGYC	1 cut(s)	1870
BssSI	CACGAG	1 cut(s)	602
BssT1I	CCWWGG	2 cut(s)	1014, 1576
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	530, 1712
Bst4CI	ACNGT	4 cut(s)	723, 806, 972, 1403
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	1870
BstAUI	TGTACA	1 cut(s)	1234
BstBAI	YACGTR	2 cut(s)	347, 565
BstC8I	GCNNGC	7 cut(s)	178, 333, 446, 483, 1141, 1384, 1874
BstDEI	CTNAG	5 cut(s)	183, 440, 690, 1583, 1799
BstF5I	GGATG	4 cut(s)	523, 786, 1347, 1462
BstFNI	CGCG	5 cut(s)	331, 333, 375, 437, 450
BstH2I	RGCGCY	5 cut(s)	256, 482, 488, 1399, 1873
BstKTI	GATC	9 cut(s)	52, 228, 415, 1164, 1242, 1246, 1443, 1498, 1854
BstMAI	GTCTC	3 cut(s)	1320, 1368, 1754
BstMBI	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
BstMCI	CGRYCG	1 cut(s)	1678
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 445, 454, 1351, 1662
BstNI	CCWGG	2 cut(s)	530, 1712
BstNSI	RCATGY	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	7 cut(s)	260, 323, 528, 1452, 1467, 1618, 1710
BstSLI	GKGCMC	1 cut(s)	459
BstUI	CGCG	5 cut(s)	331, 333, 375, 437, 450
BstV1I	GCAGC	5 cut(s)	203, 578, 1324, 1396, 1933
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	3 cut(s)	412, 1161, 1495
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	3 cut(s)	412, 1161, 1495
BstZI	CGGCCG	1 cut(s)	1675
Bsu15I	ATCGAT	1 cut(s)	1242
Bsu36I	CCTNAGG	1 cut(s)	690
BsuTUI	ATCGAT	1 cut(s)	1242
BtgZI	GCGATG	2 cut(s)	418, 934
BtrI	CACGTC	2 cut(s)	475, 510
BtsCI	GGATG	4 cut(s)	523, 786, 1347, 1462
BtsIMutI	CAGTG	4 cut(s)	251, 811, 977, 1612
Cac8I	GCNNGC	7 cut(s)	178, 333, 446, 483, 1141, 1384, 1874
CciI	TCATGA	1 cut(s)	750
Cfr10I	RCCGGY	2 cut(s)	1139, 1872
Cfr13I	GGNCC	7 cut(s)	264, 308, 455, 456, 532, 642, 1525
ClaI	ATCGAT	1 cut(s)	1242
CseI	GACGC	2 cut(s)	155, 337
Csp6I	GTAC	4 cut(s)	1226, 1235, 1532, 1610
CviQI	GTAC	4 cut(s)	1226, 1235, 1532, 1610
DdeI	CTNAG	5 cut(s)	183, 440, 690, 1583, 1799
DinI	GGCGCC	1 cut(s)	1871
DpnI	GATC	9 cut(s)	51, 227, 414, 1163, 1241, 1245, 1442, 1497, 1853
DpnII	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
DraI	TTTAAA	1 cut(s)	880
DraIII	CACNNNGTG	2 cut(s)	947, 1288
DriI	GACNNNNNGTC	1 cut(s)	1893
EaeI	YGGCCR	3 cut(s)	405, 816, 1675
EagI	CGGCCG	1 cut(s)	1675
Eam1104I	CTCTTC	1 cut(s)	425
Eam1105I	GACNNNNNGTC	1 cut(s)	1893
EarI	CTCTTC	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	1675
Eco130I	CCWWGG	2 cut(s)	1014, 1576
Eco147I	AGGCCT	2 cut(s)	131, 1581
Eco24I	GRGCYC	2 cut(s)	459, 1384
Eco47I	GGWCC	3 cut(s)	264, 642, 1525
Eco47III	AGCGCT	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	1675
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	690
Eco88I	CYCGRG	2 cut(s)	276, 1196
EcoO109I	RGGNCCY	3 cut(s)	264, 456, 1525
EcoRII	CCWGG	2 cut(s)	528, 1710
EcoT14I	CCWWGG	2 cut(s)	1014, 1576
EcoT22I	ATGCAT	1 cut(s)	1057
EcoT38I	GRGCYC	2 cut(s)	459, 1384
EgeI	GGCGCC	1 cut(s)	1871
EheI	GGCGCC	1 cut(s)	1871
ErhI	CCWWGG	2 cut(s)	1014, 1576
Esp3I	CGTCTC	1 cut(s)	1368
FalI	AAGNNNNNCTT	2 cut(s)	1416, 1448
FaqI	GGGAC	7 cut(s)	179, 340, 623, 628, 1484, 1538, 1931
FauI	CCCGC	2 cut(s)	221, 587
FbaI	TGATCA	1 cut(s)	1851
FblI	GTMKAC	1 cut(s)	1134
FokI	GGATG	4 cut(s)	530, 773, 1354, 1469
FriOI	GRGCYC	2 cut(s)	459, 1384
FspBI	CTAG	2 cut(s)	1493, 1598
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	5 cut(s)	256, 482, 488, 1399, 1873
HapII	CCGG	7 cut(s)	261, 324, 1140, 1454, 1468, 1619, 1873
HgaI	GACGC	2 cut(s)	155, 337
Hin1I	GRCGYC	1 cut(s)	1870
HinfI	GANTC	6 cut(s)	279, 496, 575, 611, 825, 1927
HpaII	CCGG	7 cut(s)	261, 324, 1140, 1454, 1468, 1619, 1873
HphI	GGTGA	6 cut(s)	514, 629, 1300, 1646, 1753, 1861
Hpy166II	GTNNAC	6 cut(s)	20, 283, 811, 1135, 1610, 1806
Hpy188III	TCNNGA	5 cut(s)	47, 751, 1247, 1325, 1982
Hpy8I	GTNNAC	6 cut(s)	20, 283, 811, 1135, 1610, 1806
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	9 cut(s)	781, 1344, 1472, 1501, 1514, 1667, 1691, 1885, 1960
HpyCH4III	ACNGT	4 cut(s)	723, 806, 972, 1403
HpyCH4IV	ACGT	8 cut(s)	346, 357, 429, 474, 509, 564, 946, 1570
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 445, 454, 1351, 1662
HpyF3I	CTNAG	5 cut(s)	183, 440, 690, 1583, 1799
HpySE526I	ACGT	8 cut(s)	346, 357, 429, 474, 509, 564, 946, 1570
Hsp92I	GRCGYC	1 cut(s)	1870
KasI	GGCGCC	1 cut(s)	1869
KflI	GGGWCCC	1 cut(s)	1525
KroI	GCCGGC	2 cut(s)	1139, 1872
KroNI	GCCGGC	2 cut(s)	1141, 1874
Ksp22I	TGATCA	1 cut(s)	1851
Kzo9I	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
LguI	GCTCTTC	1 cut(s)	425
LmnI	GCTCC	2 cut(s)	250, 1016
Lsp1109I	GCAGC	5 cut(s)	203, 578, 1324, 1396, 1933
LweI	GCATC	4 cut(s)	508, 655, 1332, 1729
MaeI	CTAG	2 cut(s)	1493, 1598
MaeII	ACGT	8 cut(s)	346, 357, 429, 474, 509, 564, 946, 1570
MaeIII	GTNAC	6 cut(s)	493, 629, 835, 842, 974, 1775
MalI	GATC	9 cut(s)	51, 227, 414, 1163, 1241, 1245, 1442, 1497, 1853
MbiI	CCGCTC	2 cut(s)	418, 911
MboI	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
MboII	GAAGA	6 cut(s)	145, 193, 412, 671, 1516, 1805
MflI	RGATCY	3 cut(s)	412, 1161, 1495
MhlI	GDGCHC	2 cut(s)	459, 1384
MlsI	TGGCCA	1 cut(s)	818
MluCI	AATT	8 cut(s)	684, 699, 708, 1188, 1263, 1436, 1512, 1828
MluNI	TGGCCA	1 cut(s)	818
Mly113I	GGCGCC	1 cut(s)	1870
MlyI	GAGTC	5 cut(s)	288, 490, 584, 605, 819
MmeI	TCCRAC	2 cut(s)	988, 1468
Mox20I	TGGCCA	1 cut(s)	818
Mph1103I	ATGCAT	1 cut(s)	1057
MroNI	GCCGGC	2 cut(s)	1139, 1872
MroXI	GAANNNNTTC	1 cut(s)	1039
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	9 cut(s)	552, 707, 879, 885, 902, 1187, 1191, 1230, 1476
MslI	CAYNNNNRTG	3 cut(s)	401, 473, 1289
Msp20I	TGGCCA	1 cut(s)	818
MspA1I	CMGCKG	2 cut(s)	216, 1315
MspI	CCGG	7 cut(s)	261, 324, 1140, 1454, 1468, 1619, 1873
MspR9I	CCNGG	7 cut(s)	262, 325, 530, 1454, 1469, 1620, 1712
Mva1269I	GAATGC	2 cut(s)	173, 1055
MvaI	CCWGG	2 cut(s)	530, 1712
MvnI	CGCG	5 cut(s)	331, 333, 375, 437, 450
MwoI	GCNNNNNNNGC	5 cut(s)	177, 445, 454, 1351, 1662
NaeI	GCCGGC	2 cut(s)	1141, 1874
NarI	GGCGCC	1 cut(s)	1870
NciI	CCSGG	5 cut(s)	262, 325, 1454, 1469, 1620
NdeII	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
NgoMIV	GCCGGC	2 cut(s)	1139, 1872
NmeAIII	GCCGAG	2 cut(s)	1653, 1673
NmuCI	GTSAC	4 cut(s)	493, 629, 835, 974
NsiI	ATGCAT	1 cut(s)	1057
NspI	RCATGY	1 cut(s)	400
PacI	TTAATTAA	1 cut(s)	1191
PagI	TCATGA	1 cut(s)	750
PauI	GCGCGC	1 cut(s)	331
PceI	AGGCCT	2 cut(s)	131, 1581
PciSI	GCTCTTC	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 195, 575, 1567
PctI	GAATGC	2 cut(s)	173, 1055
PdiI	GCCGGC	2 cut(s)	1141, 1874
PdmI	GAANNNNTTC	1 cut(s)	1039
PfeI	GAWTC	1 cut(s)	1927
PflMI	CCANNNNNTGG	1 cut(s)	1179
PfoI	TCCNGGA	1 cut(s)	1452
PleI	GAGTC	5 cut(s)	287, 490, 583, 605, 819
PluTI	GGCGCC	1 cut(s)	1873
PpsI	GAGTC	5 cut(s)	287, 490, 583, 605, 819
Ppu21I	YACGTR	2 cut(s)	347, 565
PpuMI	RGGWCCY	2 cut(s)	264, 1525
PshAI	GACNNNNGTC	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	1191
Psp5II	RGGWCCY	2 cut(s)	264, 1525
Psp6I	CCWGG	2 cut(s)	528, 1710
PspGI	CCWGG	2 cut(s)	528, 1710
PspOMI	GGGCCC	1 cut(s)	455
PspPI	GGNCC	7 cut(s)	264, 308, 455, 456, 532, 642, 1525
PspPPI	RGGWCCY	2 cut(s)	264, 1525
PsuI	RGATCY	3 cut(s)	412, 1161, 1495
PteI	GCGCGC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	1315
RsaI	GTAC	4 cut(s)	1227, 1236, 1533, 1611
RsaNI	GTAC	4 cut(s)	1226, 1235, 1532, 1610
RseI	CAYNNNNRTG	3 cut(s)	401, 473, 1289
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	9 cut(s)	552, 707, 879, 885, 902, 1187, 1191, 1230, 1476
Sau3AI	GATC	9 cut(s)	49, 225, 412, 1161, 1239, 1243, 1440, 1495, 1851
Sau96I	GGNCC	7 cut(s)	264, 308, 455, 456, 532, 642, 1525
ScaI	AGTACT	1 cut(s)	1227
SchI	GAGTC	5 cut(s)	288, 490, 584, 605, 819
ScrFI	CCNGG	7 cut(s)	262, 325, 530, 1454, 1469, 1620, 1712
SduI	GDGCHC	2 cut(s)	459, 1384
SfaNI	GCATC	4 cut(s)	508, 655, 1332, 1729
SfoI	GGCGCC	1 cut(s)	1871
SinI	GGWCC	3 cut(s)	264, 642, 1525
SmiMI	CAYNNNNRTG	3 cut(s)	401, 473, 1289
SmlI	CTYRAG	3 cut(s)	79, 647, 1982
SmoI	CTYRAG	3 cut(s)	79, 647, 1982
Sse9I	AATT	8 cut(s)	684, 699, 708, 1188, 1263, 1436, 1512, 1828
SseBI	AGGCCT	2 cut(s)	131, 1581
SspDI	GGCGCC	1 cut(s)	1869
SspI	AATATT	1 cut(s)	1023
SspMI	CTAG	2 cut(s)	1493, 1598
StuI	AGGCCT	2 cut(s)	131, 1581
StyD4I	CCNGG	7 cut(s)	260, 323, 528, 1452, 1467, 1618, 1710
StyI	CCWWGG	2 cut(s)	1014, 1576
TaaI	ACNGT	4 cut(s)	723, 806, 972, 1403
TaiI	ACGT	8 cut(s)	349, 360, 432, 477, 512, 567, 949, 1573
TaqI	TCGA	7 cut(s)	569, 578, 663, 1242, 1324, 1614, 1826
TasI	AATT	8 cut(s)	684, 699, 708, 1188, 1263, 1436, 1512, 1828
TatI	WGTACW	4 cut(s)	1225, 1234, 1531, 1609
TauI	GCSGC	8 cut(s)	120, 309, 911, 1123, 1665, 1680, 1847, 1972
TfiI	GAWTC	1 cut(s)	1927
Tru1I	TTAA	9 cut(s)	552, 707, 879, 885, 902, 1187, 1191, 1230, 1476
Tru9I	TTAA	9 cut(s)	552, 707, 879, 885, 902, 1187, 1191, 1230, 1476
TscAI	CASTG	4 cut(s)	251, 811, 977, 1612
TseFI	GTSAC	4 cut(s)	493, 629, 835, 974
TseI	GCWGC	5 cut(s)	216, 591, 1312, 1409, 1946
Tsp45I	GTSAC	4 cut(s)	493, 629, 835, 974
TspDTI	ATGAA	5 cut(s)	775, 880, 1537, 1544, 1653
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	4 cut(s)	251, 811, 977, 1612
Van91I	CCANNNNNTGG	1 cut(s)	1179
VpaK11BI	GGWCC	3 cut(s)	264, 642, 1525
VspI	ATTAAT	1 cut(s)	1191
XceI	RCATGY	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	1134
XmnI	GAANNNNTTC	1 cut(s)	1039
XspI	CTAG	2 cut(s)	1493, 1598
ZrmI	AGTACT	1 cut(s)	1227
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.