Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002285

Physical Location & Seq

Genomic Coordinates Reverse (-)

17871837 .. 17873874

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17720.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGACAGAAGTGCAAAGCTGGCCTTACAAGTTTCCTGCTTCCAAGGATTATCCGCCGTCGGATGAACGGGGTAATGTTAAGGGTAGAATACAGATTCTGGATAGGTATGTTAGTAAAGATCGCGTACCTGGAAACGGTGCATATGTAGGCTTGGCACCACCAGGAGACGCTGGATCATGGCAAAGAGATTGTAAGGGCTACCAGTTCTGGACTAGGGCAGATGAGAAAGGATATTACTCTATACAGAATATACGCGAGGGTGACTATAATCTCTATGCATGGTGTCCTGGTTTTATCGGAGATTATCGATATGACGCAACTATTACCATAACCACAGGTTGTGATATTGATGTGGATGATATTGTATATGAGCCTCCAAGAGATGGACCAACGTTGTGGGAAATTGGCATCCCTGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCTAATCCAATGTATATCAATAAACTTTATGTCAACCATCCTGATGGGTTTAGGCAGTACGGATTATGGGAAAGATACCAAGAGTTATATCCTGATGAAGATTTAATTTACAGCATCGGCACCAGTGACTATACTAAAGATTGGTTCTTCGCCCAGGTTCCTAGGAAGAAAGATGATGACACATATCAAGGCACTACATGGCAAATCAAGTTTCAACTTAAGCATTTCAGTGAAAGTGATACCCTCAAACTTCGAATAGCCCTTGCCACTGCAAACATTGCAGAATTACAGGTACATGTTATGTGTAGAATTGCATGTAAATGTAACCAAAGCTCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

30.44

Weight (kDa)

4.91

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24430 AT4G24430
fragaria_vesca	FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34150
malus_domestica	MD08G1204400.v1.1 MD08G1205000.v1.1
prunus_persica	Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536700_v2.0.a1 Prupe.1G536700_v2.0.a1
pyrus_communis	pycom08g17670 pycom08g17720
rosa_chinensis	RchiOBHm_Chr7g0233711 RchiOBHm_Chr7g0233721 RchiOBHm_Chr7g0233731 RchiOBHm_Chr7g0233741
rosa_laevigata	RLG00000001237 RLG00000001239 RLG00000001240
rosa_multiflora	Rmu_sc0000740.1_g000047 Rmu_sc0000740.1_g000058 Rmu_sc0010145.1_g000001 Rmu_sc0011583.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227030 Rroxscaffold_3G00227050 Rroxscaffold_3G00227070
rosa_rugosa	Rorug07G0282300 Rorug07G0282300
rosa_samantha	Rh7AG438600 Rh7AG438700 Rh7BG411300 Rh7CG458200 Rh7CG458300 Rh7CG458400 Rh7DG428200
rosa_wichuraiana	Rw7G036170 Rw7G036180 Rw7G036230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	157, 569
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccII	CGCG	2 cut(s)	126, 258
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	395
AclWI	GGATC	2 cut(s)	184, 443
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	3 cut(s)	129, 509, 744
AfiI	CCNNNNNNNGG	2 cut(s)	137, 386
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	1 cut(s)	665
AjnI	CCWGG	4 cut(s)	130, 163, 289, 603
AluBI	AGCT	2 cut(s)	21, 783
AluI	AGCT	2 cut(s)	21, 783
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	184, 443
AlwNI	CAGNNNCTG	1 cut(s)	100
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	434
AspA2I	CCTAGG	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	703
AvaII	GGWCC	1 cut(s)	389
AvrII	CCTAGG	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	157, 569
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	380, 488, 495
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	4 cut(s)	132, 165, 291, 605
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	2 cut(s)	216, 612
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	1 cut(s)	429
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	4 cut(s)	132, 165, 291, 605
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	159, 571, 609
BmrFI	CCNGG	4 cut(s)	132, 165, 291, 605
BmsI	GCATC	2 cut(s)	420, 573
Bpu14I	TTCGAA	1 cut(s)	703
Bsa29I	ATCGAT	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	45, 603, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 386
Bse1I	ACTGG	2 cut(s)	205, 573
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	4 cut(s)	132, 165, 291, 605
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	45, 603, 611
BseGI	GGATG	4 cut(s)	70, 364, 411, 487
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	137, 386
BseMI	GCAATG	1 cut(s)	726
BseNI	ACTGG	2 cut(s)	205, 573
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	126, 258
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	2 cut(s)	157, 569
BshVI	ATCGAT	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	137, 386
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	703
Bsp143I	GATC	4 cut(s)	121, 176, 418, 448
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	25
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	126, 258
BspLI	GGNNCC	3 cut(s)	159, 571, 609
BspPI	GGATC	2 cut(s)	184, 443
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	2 cut(s)	157, 569
BspTI	CTTAAG	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	205, 573
BssECI	CCNNGG	3 cut(s)	45, 603, 611
BssMI	GATC	4 cut(s)	121, 176, 418, 448
BssT1I	CCWWGG	2 cut(s)	45, 611
Bst2UI	CCWGG	4 cut(s)	132, 165, 291, 605
Bst4CI	ACNGT	1 cut(s)	140
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	23
BstF5I	GGATG	4 cut(s)	70, 364, 411, 487
BstFNI	CGCG	2 cut(s)	126, 258
BstKTI	GATC	4 cut(s)	124, 179, 421, 451
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	121, 176, 418, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 728
BstNI	CCWGG	4 cut(s)	132, 165, 291, 605
BstNSI	RCATGY	2 cut(s)	749, 768
BstSCI	CCNGG	4 cut(s)	130, 163, 289, 603
BstUI	CGCG	2 cut(s)	126, 258
BstV1I	GCAGC	1 cut(s)	415
BstXI	CCANNNNNNTGG	2 cut(s)	399, 494
Bsu15I	ATCGAT	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	70, 364, 411, 487
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	580, 685, 717
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	310
CseI	GACGC	2 cut(s)	179, 326
Csp6I	GTAC	3 cut(s)	128, 508, 743
CviAII	CATG	5 cut(s)	180, 282, 648, 746, 765
CviJI	RGCY	7 cut(s)	21, 25, 153, 201, 376, 710, 783
CviKI_1	RGCY	7 cut(s)	21, 25, 153, 201, 376, 710, 783
CviQI	GTAC	3 cut(s)	128, 508, 743
DpnI	GATC	4 cut(s)	123, 178, 420, 450
DpnII	GATC	4 cut(s)	121, 176, 418, 448
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	45, 611
Eco47I	GGWCC	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	4 cut(s)	130, 163, 289, 603
EcoT14I	CCWWGG	2 cut(s)	45, 611
EcoT22I	ATGCAT	1 cut(s)	283
ErhI	CCWWGG	2 cut(s)	45, 611
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	5 cut(s)	183, 285, 651, 749, 768
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	5 cut(s)	179, 281, 647, 745, 764
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	4 cut(s)	77, 371, 398, 474
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	216, 612
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	25
HgaI	GACGC	2 cut(s)	179, 326
Hin1II	CATG	5 cut(s)	183, 285, 651, 749, 768
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	64, 302
Hpy188III	TCNNGA	5 cut(s)	101, 211, 446, 491, 542
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	6 cut(s)	16, 143, 281, 722, 731, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 728
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	5 cut(s)	183, 285, 651, 749, 768
Kzo9I	GATC	4 cut(s)	121, 176, 418, 448
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	420, 573
MaeI	CTAG	2 cut(s)	216, 612
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	3 cut(s)	263, 575, 773
MalI	GATC	4 cut(s)	123, 178, 420, 450
MboI	GATC	4 cut(s)	121, 176, 418, 448
MboII	GAAGA	3 cut(s)	560, 589, 628
MluCI	AATT	5 cut(s)	405, 434, 555, 734, 759
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	253, 387, 704
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	3 cut(s)	81, 554, 669
MslI	CAYNNNNRTG	3 cut(s)	492, 678, 769
MspCI	CTTAAG	1 cut(s)	668
MspR9I	CCNGG	4 cut(s)	132, 165, 291, 605
MvaI	CCWGG	4 cut(s)	132, 165, 291, 605
MvnI	CGCG	2 cut(s)	126, 258
MwoI	GCNNNNNNNGC	2 cut(s)	22, 728
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	4 cut(s)	121, 176, 418, 448
NlaIII	CATG	5 cut(s)	183, 285, 651, 749, 768
NlaIV	GGNNCC	3 cut(s)	159, 571, 609
NmuCI	GTSAC	2 cut(s)	263, 575
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	749, 768
NspV	TTCGAA	1 cut(s)	703
PciI	ACATGT	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	745
Psp1406I	AACGTT	1 cut(s)	395
Psp6I	CCWGG	4 cut(s)	130, 163, 289, 603
PspGI	CCWGG	4 cut(s)	130, 163, 289, 603
PspN4I	GGNNCC	3 cut(s)	159, 571, 609
PspPI	GGNCC	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	100
RsaI	GTAC	3 cut(s)	129, 509, 744
RsaNI	GTAC	3 cut(s)	128, 508, 743
RseI	CAYNNNNRTG	3 cut(s)	492, 678, 769
SaqAI	TTAA	3 cut(s)	81, 554, 669
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	121, 176, 418, 448
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	132, 165, 291, 605
SetI	ASST	8 cut(s)	23, 110, 133, 343, 398, 609, 744, 785
SfaNI	GCATC	2 cut(s)	420, 573
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	3 cut(s)	492, 678, 769
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	5 cut(s)	405, 434, 555, 734, 759
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	216, 612
StyD4I	CCNGG	4 cut(s)	130, 163, 289, 603
StyI	CCWWGG	2 cut(s)	45, 611
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	2 cut(s)	310, 703
TasI	AATT	5 cut(s)	405, 434, 555, 734, 759
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	81, 554, 669
Tru9I	TTAA	3 cut(s)	81, 554, 669
TscAI	CASTG	3 cut(s)	580, 685, 724
TseFI	GTSAC	2 cut(s)	263, 575
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	263, 575
TspDTI	ATGAA	2 cut(s)	81, 561
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	3 cut(s)	580, 685, 724
Van91I	CCANNNNNTGG	1 cut(s)	386
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	2 cut(s)	749, 768
XmaJI	CCTAGG	1 cut(s)	611
XspI	CTAG	2 cut(s)	216, 612
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.