Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011583.1

Orthogroup ID

OG0002285

Physical Location & Seq

Genomic Coordinates Forward (+)

29795 .. 33238

Gene Structure 3444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011583.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atgacgtccctgggggtgcaattgcatattcaggaccatcatgtgattatggataacggcatactccaagttacattatcaaatccagatggaattgttaccgggatccaatataacggcattgacaatttacttgaagttcttgatgaagaagctaatagagggtattgggacctcgtttggagtgaaacgggaagtaccggaacaactggaacctttgatccaattataggaacaaaactcaccgttatagtggaaagtgaagaacaagtagagatctcattcaccagagagtggaatcacgaggacaagaatgtcccgctaaatatagacaaaaggtttgtaatgcttcgtaattcgtcaggcttatactcgtacgccatctacgagcacttgaaagaatggcctcctttcaaccttccccagaccaggattgtgttcaagctcagtaaagagaagtttcagtatatggcgatagctgataacaggcaaagaaacatgccccttccggatgaccgatcaccagagagaagccaaatcctaaactcagaattcccagaagcactccttcttgtcaatcctatagagccacaatataagggagaggtggatgacaagtaccaatactcatgcgagaaccaaaatttgtgggttcacggttggatatgcatggaccctcatgtagggttttggcagataacgcccagtgatgagttccgatctggcgggcctcttaaacaaaacctcacctcccacgtcggtccttattgtcttgcaatgtttctcagtgctcactattcaggagaggaccttgtgctgaagcttaaaccaaatgagccatggaaaaaagttttcggccctgtttttatctatcttaattccgcatctcatgcaatagattcatcaccactttgggaagatgcaaagaaacagatgatgacagaagtacagagctggccttatgagtttccagcttccaatgattttccaacgtcaaagcaacggggtaatgttagcggtagaatacgtgttcgagatagctttgttagcgacgatcacatactcggccatggtgcttatgttgggttggcaccccctggagatgttggatcatggcaaagagattgcaaggtgaatgcactttcaaacaatctttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016829 GO:0016835 GO:0016837 GO:0017144 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0045488 GO:0045490 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

386

Amino Acids

43.92

Weight (kDa)

5.11

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24430 AT4G24430
fragaria_vesca	FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34150
malus_domestica	MD08G1204400.v1.1 MD08G1205000.v1.1
prunus_persica	Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536700_v2.0.a1 Prupe.1G536700_v2.0.a1
pyrus_communis	pycom08g17670 pycom08g17720
rosa_chinensis	RchiOBHm_Chr7g0233711 RchiOBHm_Chr7g0233721 RchiOBHm_Chr7g0233731 RchiOBHm_Chr7g0233741
rosa_laevigata	RLG00000001237 RLG00000001239 RLG00000001240
rosa_multiflora	Rmu_sc0000740.1_g000047 Rmu_sc0000740.1_g000058 Rmu_sc0010145.1_g000001 Rmu_sc0011583.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227030 Rroxscaffold_3G00227050 Rroxscaffold_3G00227070
rosa_rugosa	Rorug07G0282300 Rorug07G0282300
rosa_samantha	Rh7AG438600 Rh7AG438700 Rh7BG411300 Rh7CG458200 Rh7CG458300 Rh7CG458400 Rh7DG428200
rosa_wichuraiana	Rw7G036170 Rw7G036180 Rw7G036230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	314
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	1090
AccB7I	CCANNNNNTGG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	4 cut(s)	320, 726, 882, 1017
AclWI	GGATC	4 cut(s)	100, 113, 215, 1117
AcoI	YGGCCR	1 cut(s)	1066
AcsI	RAATTY	2 cut(s)	551, 643
AcuI	CTGAAG	1 cut(s)	839
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	199, 377, 620, 948
AfiI	CCNNNNNNNGG	4 cut(s)	230, 294, 429, 683
AflIII	ACRYGT	1 cut(s)	1027
AgsI	TTSAA	5 cut(s)	137, 397, 415, 442, 1146
AjiI	CACGTC	1 cut(s)	757
AjnI	CCWGG	3 cut(s)	9, 428, 1096
AloI	GAACNNNNNNTCC	2 cut(s)	205, 237
AluBI	AGCT	7 cut(s)	155, 445, 479, 823, 954, 974, 1041
AluI	AGCT	7 cut(s)	155, 445, 479, 823, 954, 974, 1041
Alw21I	GWGCWC	2 cut(s)	393, 793
AlwI	GGATC	4 cut(s)	100, 113, 215, 1117
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	5 cut(s)	404, 728, 856, 956, 1066
ApoI	RAATTY	2 cut(s)	551, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspS9I	GGNCC	7 cut(s)	34, 172, 673, 728, 761, 808, 857
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	6 cut(s)	235, 277, 513, 739, 897, 1144
AvaII	GGWCC	5 cut(s)	34, 172, 673, 761, 808
BamHI	GGATCC	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	1090
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	393, 793
BccI	CCATC	3 cut(s)	45, 83, 389
BceAI	ACGGC	2 cut(s)	73, 133
BciT130I	CCWGG	3 cut(s)	11, 430, 1098
BcnI	CCSGG	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	582
BglII	AGATCT	1 cut(s)	276
Bme1390I	CCNGG	4 cut(s)	11, 103, 430, 1098
Bme18I	GGWCC	5 cut(s)	34, 172, 673, 761, 808
BmgBI	CACGTC	1 cut(s)	757
BmgT120I	GGNCC	7 cut(s)	34, 172, 673, 728, 761, 808, 857
BmiI	GGNNCC	5 cut(s)	107, 173, 214, 675, 1092
BmrFI	CCNGG	4 cut(s)	11, 103, 430, 1098
BmrI	ACTGGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	893, 910
BmuI	ACTGGG	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	1119
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	9, 10, 839, 1069, 1096
BsaWI	WCCGGW	2 cut(s)	200, 508
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	4 cut(s)	230, 294, 429, 683
Bse1I	ACTGG	2 cut(s)	214, 705
Bse3DI	GCAATG	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	3 cut(s)	11, 430, 1098
BseDI	CCNNGG	5 cut(s)	9, 10, 839, 1069, 1096
BseGI	GGATG	2 cut(s)	517, 616
BseLI	CCNNNNNNNGG	4 cut(s)	230, 294, 429, 683
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	3 cut(s)	460, 561, 799
BseNI	ACTGG	2 cut(s)	214, 705
BshFI	GGCC	5 cut(s)	406, 730, 858, 958, 1068
BshNI	GGYRCC	1 cut(s)	1090
BsiHKAI	GWGCWC	2 cut(s)	393, 793
BsiSI	CCGG	3 cut(s)	102, 201, 509
BsiWI	CGTACG	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	185, 302
BslI	CCNNNNNNNGG	4 cut(s)	230, 294, 429, 683
BsmFI	GGGAC	2 cut(s)	185, 302
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	5 cut(s)	406, 730, 858, 958, 1068
Bsp1286I	GDGCHC	2 cut(s)	393, 793
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
Bsp19I	CCATGG	2 cut(s)	839, 1069
BspACI	CCGC	4 cut(s)	320, 726, 882, 1017
BspANI	GGCC	5 cut(s)	406, 730, 858, 958, 1068
BspCNI	CTCAG	3 cut(s)	459, 560, 798
BspEI	TCCGGA	1 cut(s)	508
BspLI	GGNNCC	5 cut(s)	107, 173, 214, 675, 1092
BspPI	GGATC	4 cut(s)	100, 113, 215, 1117
BspT107I	GGYRCC	1 cut(s)	1090
BsrDI	GCAATG	1 cut(s)	783
BsrI	ACTGG	2 cut(s)	214, 705
BssECI	CCNNGG	5 cut(s)	9, 10, 839, 1069, 1096
BssMI	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	2 cut(s)	839, 1069
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	11, 430, 1098
Bst4CI	ACNGT	2 cut(s)	247, 659
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	2 cut(s)	728, 956
BstDEI	CTNAG	3 cut(s)	446, 547, 785
BstDSI	CCRYGG	2 cut(s)	839, 1069
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	517, 616
BstKTI	GATC	7 cut(s)	108, 223, 279, 521, 722, 1057, 1112
BstMBI	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
BstMWI	GCNNNNNNNGC	3 cut(s)	700, 890, 1047
BstNI	CCWGG	3 cut(s)	11, 430, 1098
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	4 cut(s)	9, 101, 428, 1096
BstSFI	CTRYAG	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	105, 276
BstYI	RGATCY	2 cut(s)	105, 276
BsuRI	GGCC	5 cut(s)	406, 730, 858, 958, 1068
BtgI	CCRYGG	2 cut(s)	839, 1069
BtrI	CACGTC	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	517, 616
BtsIMutI	CAGTG	2 cut(s)	712, 793
Cac8I	GCNNGC	2 cut(s)	728, 956
Cfr13I	GGNCC	7 cut(s)	34, 172, 673, 728, 761, 808, 857
Csp6I	GTAC	4 cut(s)	198, 376, 619, 947
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	9 cut(s)	41, 499, 630, 670, 680, 840, 890, 1070, 1113
CviQI	GTAC	4 cut(s)	198, 376, 619, 947
DdeI	CTNAG	3 cut(s)	446, 547, 785
DpnI	GATC	7 cut(s)	107, 222, 278, 520, 721, 1056, 1111
DpnII	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
DrdI	GACNNNNNNGTC	1 cut(s)	314
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	1066
Eco130I	CCWWGG	2 cut(s)	839, 1069
Eco47I	GGWCC	5 cut(s)	34, 172, 673, 761, 808
Eco57I	CTGAAG	1 cut(s)	839
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	2 cut(s)	172, 808
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	3 cut(s)	9, 428, 1096
EcoT14I	CCWWGG	2 cut(s)	839, 1069
EcoT22I	ATGCAT	1 cut(s)	671
ErhI	CCWWGG	2 cut(s)	839, 1069
FaeI	CATG	9 cut(s)	44, 502, 633, 673, 683, 843, 893, 1073, 1116
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	2 cut(s)	185, 302
FatI	CATG	9 cut(s)	40, 498, 629, 669, 679, 839, 889, 1069, 1112
FauI	CCCGC	2 cut(s)	327, 719
FokI	GGATG	2 cut(s)	524, 623
GsuI	CTGGAG	1 cut(s)	1119
HaeIII	GGCC	5 cut(s)	406, 730, 858, 958, 1068
HapII	CCGG	3 cut(s)	102, 201, 509
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	9 cut(s)	44, 502, 633, 673, 683, 843, 893, 1073, 1116
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	2 cut(s)	298, 899
HpaII	CCGG	3 cut(s)	102, 201, 509
HphI	GGTGA	6 cut(s)	235, 277, 513, 739, 897, 1144
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	2 cut(s)	550, 719
Hpy188III	TCNNGA	7 cut(s)	32, 86, 143, 302, 509, 801, 1034
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	2 cut(s)	761, 1055
HpyAV	CCTTC	3 cut(s)	428, 515, 578
HpyCH4III	ACNGT	2 cut(s)	247, 659
HpyCH4IV	ACGT	4 cut(s)	5, 756, 992, 1027
HpyCH4V	TGCA	8 cut(s)	19, 25, 669, 776, 893, 923, 1128, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	700, 890, 1047
HpyF3I	CTNAG	3 cut(s)	446, 547, 785
HpySE526I	ACGT	4 cut(s)	5, 756, 992, 1027
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	44, 502, 633, 673, 683, 843, 893, 1073, 1116
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
LweI	GCATC	2 cut(s)	893, 910
MaeII	ACGT	4 cut(s)	5, 756, 992, 1027
MaeIII	GTNAC	2 cut(s)	70, 97
MalI	GATC	7 cut(s)	107, 222, 278, 520, 721, 1056, 1111
MboI	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
MboII	GAAGA	3 cut(s)	161, 275, 929
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	2 cut(s)	105, 276
MhlI	GDGCHC	2 cut(s)	393, 793
MluCI	AATT	8 cut(s)	20, 93, 127, 225, 355, 551, 643, 877
MmeI	TCCRAC	3 cut(s)	641, 1013, 1087
Mph1103I	ATGCAT	1 cut(s)	671
MroI	TCCGGA	1 cut(s)	508
MseI	TTAA	4 cut(s)	735, 825, 876, 1159
MspI	CCGG	3 cut(s)	102, 201, 509
MspR9I	CCNGG	4 cut(s)	11, 103, 430, 1098
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	3 cut(s)	11, 430, 1098
MwoI	GCNNNNNNNGC	3 cut(s)	700, 890, 1047
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	2 cut(s)	839, 1069
NdeII	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
NlaIII	CATG	9 cut(s)	44, 502, 633, 673, 683, 843, 893, 1073, 1116
NlaIV	GGNNCC	5 cut(s)	107, 173, 214, 675, 1092
NmeAIII	GCCGAG	1 cut(s)	1044
NsiI	ATGCAT	1 cut(s)	671
NspI	RCATGY	1 cut(s)	502
PasI	CCCWGGG	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	1141
PfeI	GAWTC	2 cut(s)	298, 899
Pfl23II	CGTACG	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	294
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	2 cut(s)	172, 808
Psp5II	RGGWCCY	2 cut(s)	172, 808
Psp6I	CCWGG	3 cut(s)	9, 428, 1096
PspGI	CCWGG	3 cut(s)	9, 428, 1096
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	5 cut(s)	107, 173, 214, 675, 1092
PspPI	GGNCC	7 cut(s)	34, 172, 673, 728, 761, 808, 857
PspPPI	RGGWCCY	2 cut(s)	172, 808
PsuI	RGATCY	2 cut(s)	105, 276
RsaI	GTAC	4 cut(s)	199, 377, 620, 948
RsaNI	GTAC	4 cut(s)	198, 376, 619, 947
SaqAI	TTAA	4 cut(s)	735, 825, 876, 1159
Sau3AI	GATC	7 cut(s)	105, 220, 276, 518, 719, 1054, 1109
Sau96I	GGNCC	7 cut(s)	34, 172, 673, 728, 761, 808, 857
ScrFI	CCNGG	4 cut(s)	11, 103, 430, 1098
SduI	GDGCHC	2 cut(s)	393, 793
SfaNI	GCATC	2 cut(s)	893, 910
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	5 cut(s)	34, 172, 673, 761, 808
Sse9I	AATT	8 cut(s)	20, 93, 127, 225, 355, 551, 643, 877
SsiI	CCGC	4 cut(s)	320, 726, 882, 1017
StyD4I	CCNGG	4 cut(s)	9, 101, 428, 1096
StyI	CCWWGG	2 cut(s)	839, 1069
TaaI	ACNGT	2 cut(s)	247, 659
TaiI	ACGT	4 cut(s)	8, 759, 995, 1030
TaqI	TCGA	1 cut(s)	1033
TaqII	GACCGA	2 cut(s)	531, 749
TasI	AATT	8 cut(s)	20, 93, 127, 225, 355, 551, 643, 877
TatI	WGTACW	1 cut(s)	946
TfiI	GAWTC	2 cut(s)	298, 899
Tru1I	TTAA	4 cut(s)	735, 825, 876, 1159
Tru9I	TTAA	4 cut(s)	735, 825, 876, 1159
TscAI	CASTG	2 cut(s)	712, 793
TspDTI	ATGAA	2 cut(s)	162, 891
TspRI	CASTG	2 cut(s)	712, 793
Van91I	CCANNNNNTGG	1 cut(s)	294
VpaK11BI	GGWCC	5 cut(s)	34, 172, 673, 761, 808
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	551, 643
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
ZraI	GACGTC	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.