Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002285

Physical Location & Seq

Genomic Coordinates Forward (+)

27415031 .. 27417989

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGTATAGCAGTGTTCATATGGCAAGACCACCCATTGTACCCTCTCCTTCTCTTGCAAAACAGAGATGAATACCACAACAGGCCTACGAAGCCGGTAGGATGGTGGGAAGGTTGTGAGATATTAGGCGGGAGAGATGAGGTTGCAGGAGGGACATGGCTGGCTTGTTCAAGAGGAGGGAGAGTTGCTTTGCTTACAAACGTGCTCGAGCTTCATACCTCACCGGAGGCAAAGAGCCGGGGAGACCTGCCTGTGCTTTTCTTAGAGAGCTTGAAGAGTCCAAAAGAATTTGCACAAGAGTTGGTTAAAGAGGCTCACCAGTATAATGGGTTTAACCTGATATTGGCAGATCTTCAATCCAAAACCATGGTTTACCTCTCCAACAGACCAAAAGGAGAGCCTATTCTCATTCAAGAGGTTTCTCCAGGCATTCATGTGCTTTCCAATGCAAAGCTTGACTCACCGTGGCACAAGGCCCAGCGCTTGCGGCTAAATTTTCAGAAAGAGCTTATCAAGTATGGAGAAGGTGAAATACCAGTGAAGGAACTGATCCAAAAACTAATGAAGGACAAAGTTAAAGCTGATAAAAGCAAATTACCTCGTATATGTGAACTCGACTGGGAGTATAAACTGAGCTCCATATTTGTTGAAGTTGACACTCCACTGGGACGCTATGGCACCAGGAGCAGTGCTGCAGTGTCAGTAAGACAAAATGGGAACGTGAGTTTTTATGAGAGCTATCTTGATAATGGCATTTGGAAGGAAGGGACTGTGAAGTACCAAATTCAGAAGCTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016829 GO:0016835 GO:0016837 GO:0017144 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0045488 GO:0045490 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

266

Amino Acids

30.32

Weight (kDa)

8.72

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TANGO2	PF05742	1 - 249	2.6e-75	Transport and Golgi organisation 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24430 AT4G24430
fragaria_vesca	FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34150
malus_domestica	MD08G1204400.v1.1 MD08G1205000.v1.1
prunus_persica	Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536700_v2.0.a1 Prupe.1G536700_v2.0.a1
pyrus_communis	pycom08g17670 pycom08g17720
rosa_chinensis	RchiOBHm_Chr7g0233711 RchiOBHm_Chr7g0233721 RchiOBHm_Chr7g0233731 RchiOBHm_Chr7g0233741
rosa_laevigata	RLG00000001237 RLG00000001239 RLG00000001240
rosa_multiflora	Rmu_sc0000740.1_g000047 Rmu_sc0000740.1_g000058 Rmu_sc0010145.1_g000001 Rmu_sc0011583.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227030 Rroxscaffold_3G00227050 Rroxscaffold_3G00227070
rosa_rugosa	Rorug07G0282300 Rorug07G0282300
rosa_samantha	Rh7AG438600 Rh7AG438700 Rh7BG411300 Rh7CG458200 Rh7CG458300 Rh7CG458400 Rh7DG428200
rosa_wichuraiana	Rw7G036170 Rw7G036180 Rw7G036230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	677
AciI	CCGC	2 cut(s)	129, 487
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	3 cut(s)	287, 493, 783
AfaI	GTAC	2 cut(s)	41, 779
AfeI	AGCGCT	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	5 cut(s)	171, 274, 356, 413, 650
AjnI	CCWGG	2 cut(s)	424, 680
AluBI	AGCT	8 cut(s)	211, 270, 454, 508, 581, 636, 738, 793
AluI	AGCT	8 cut(s)	211, 270, 454, 508, 581, 636, 738, 793
Alw21I	GWGCWC	2 cut(s)	207, 638
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	206
Aor51HI	AGCGCT	1 cut(s)	482
AoxI	GGCC	2 cut(s)	83, 474
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	3 cut(s)	287, 493, 783
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	213, 308, 453, 539
AvaI	CYCGRG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	638
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
Bbv12I	GWGCWC	2 cut(s)	207, 638
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	1 cut(s)	96
BciT130I	CCWGG	2 cut(s)	426, 682
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	484
BfuAI	ACCTGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	488, 693
BlsI	GCNGC	2 cut(s)	489, 694
Bme1390I	CCNGG	3 cut(s)	239, 426, 682
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	3 cut(s)	239, 426, 682
BmrI	ACTGGG	2 cut(s)	628, 674
BmuI	ACTGGG	2 cut(s)	628, 674
BpmI	CTGGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	238, 366, 464
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	4 cut(s)	319, 536, 623, 669
BseBI	CCWGG	2 cut(s)	426, 682
BseDI	CCNNGG	3 cut(s)	238, 366, 464
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	4 cut(s)	319, 536, 623, 669
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	477
BshFI	GGCC	2 cut(s)	85, 476
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	2 cut(s)	207, 638
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	95, 224, 238
BslFI	GGGAC	3 cut(s)	166, 681, 781
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	166, 681, 781
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	85, 476
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	207, 638
Bsp143I	GATC	2 cut(s)	349, 549
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	2 cut(s)	129, 487
BspANI	GGCC	2 cut(s)	85, 476
BspCNI	CTCAG	1 cut(s)	624
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	4 cut(s)	319, 536, 623, 669
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	238, 366, 464
BssMI	GATC	2 cut(s)	349, 549
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	426, 682
Bst4CI	ACNGT	2 cut(s)	465, 772
Bst6I	CTCTTC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	162, 485
BstDEI	CTNAG	2 cut(s)	262, 632
BstDSI	CCRYGG	2 cut(s)	366, 464
BstF5I	GGATG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	2 cut(s)	352, 552
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	349, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
BstNI	CCWGG	2 cut(s)	426, 682
BstSCI	CCNGG	3 cut(s)	237, 424, 680
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	2 cut(s)	326, 367
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	85, 476
BtgI	CCRYGG	2 cut(s)	366, 464
BtsCI	GGATG	1 cut(s)	107
BtsI	GCAGTG	3 cut(s)	18, 694, 702
BtsIMutI	CAGTG	5 cut(s)	18, 543, 662, 694, 702
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	162, 485
CaiI	CAGNNNCTG	1 cut(s)	793
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	2 cut(s)	40, 778
CviAII	CATG	3 cut(s)	156, 367, 434
CviQI	GTAC	2 cut(s)	40, 778
DdeI	CTNAG	2 cut(s)	262, 632
DpnI	GATC	2 cut(s)	351, 551
DpnII	GATC	2 cut(s)	349, 549
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	366
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	636
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	636
EcoRII	CCWGG	2 cut(s)	424, 680
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	159, 370, 437
FaqI	GGGAC	3 cut(s)	166, 681, 781
FatI	CATG	3 cut(s)	155, 366, 433
FauI	CCCGC	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	488, 693
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	488, 693
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	488, 693
GsaI	CCCAGC	1 cut(s)	481
GsuI	CTGGAG	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	85, 476
HapII	CCGG	3 cut(s)	95, 224, 238
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	159, 370, 437
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	2 cut(s)	277, 458
HpaII	CCGG	3 cut(s)	95, 224, 238
HphI	GGTGA	4 cut(s)	213, 308, 453, 539
Hpy166II	GTNNAC	3 cut(s)	373, 611, 655
Hpy188I	TCNGA	2 cut(s)	501, 789
Hpy188III	TCNNGA	3 cut(s)	171, 413, 743
Hpy8I	GTNNAC	3 cut(s)	373, 611, 655
HpyAV	CCTTC	7 cut(s)	59, 104, 518, 535, 559, 754, 758
HpyCH4III	ACNGT	2 cut(s)	465, 772
HpyCH4IV	ACGT	2 cut(s)	201, 720
HpyCH4V	TGCA	5 cut(s)	58, 146, 293, 449, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
HpyF3I	CTNAG	2 cut(s)	262, 632
HpySE526I	ACGT	2 cut(s)	201, 720
Hsp92II	CATG	3 cut(s)	159, 370, 437
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	349, 549
LmnI	GCTCC	2 cut(s)	641, 684
Lsp1109I	GCAGC	1 cut(s)	679
MaeII	ACGT	2 cut(s)	201, 720
MalI	GATC	2 cut(s)	351, 551
MboI	GATC	2 cut(s)	349, 549
MboII	GAAGA	2 cut(s)	286, 344
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	207, 638
MluCI	AATT	4 cut(s)	287, 493, 593, 783
MlyI	GAGTC	2 cut(s)	286, 452
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	3 cut(s)	306, 333, 576
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	3 cut(s)	95, 224, 238
MspR9I	CCNGG	3 cut(s)	239, 426, 682
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	2 cut(s)	426, 682
MwoI	GCNNNNNNNGC	3 cut(s)	91, 487, 684
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	2 cut(s)	349, 549
NlaIII	CATG	3 cut(s)	159, 370, 437
NlaIV	GGNNCC	1 cut(s)	679
PaeR7I	CTCGAG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	489, 694
PleI	GAGTC	2 cut(s)	285, 452
PpsI	GAGTC	2 cut(s)	285, 452
Psp124BI	GAGCTC	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	424, 680
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	2 cut(s)	424, 680
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	475
PspXI	VCTCGAGB	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	41, 779
RsaNI	GTAC	2 cut(s)	40, 778
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	306, 333, 576
SatI	GCNGC	2 cut(s)	488, 693
Sau3AI	GATC	2 cut(s)	349, 549
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	2 cut(s)	286, 452
ScrFI	CCNGG	3 cut(s)	239, 426, 682
SduI	GDGCHC	2 cut(s)	207, 638
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	287, 493, 593, 783
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	129, 487
SstI	GAGCTC	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	3 cut(s)	237, 424, 680
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	465, 772
TaiI	ACGT	2 cut(s)	204, 723
TaqI	TCGA	2 cut(s)	207, 615
TasI	AATT	4 cut(s)	287, 493, 593, 783
TauI	GCSGC	1 cut(s)	490
Tru1I	TTAA	3 cut(s)	306, 333, 576
Tru9I	TTAA	3 cut(s)	306, 333, 576
TscAI	CASTG	5 cut(s)	18, 543, 669, 694, 702
TseI	GCWGC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	7, 84, 203, 422, 578
TspRI	CASTG	5 cut(s)	18, 543, 669, 694, 702
XapI	RAATTY	3 cut(s)	287, 493, 783
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.