Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002285

Physical Location & Seq

Genomic Coordinates Forward (+)

58262779 .. 58268974

Gene Structure 6196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGCTTCGTAATTCGTCAGGCTTCTACTCGTATGCCATCTATGAGCACTTGAAAGAATGGCCTCCTTTTAACCTTCCGCAGACCAGGATAACATTCAAGCTCAGTCAAGAAAAGTTTCGGTACATGGCCATAGCGGATAACAGGCAAAGATACATGCCGCTTCCGGATGACCGATTACCAGACAGAAGCAAAGTTTTAGATTTTCCAGAGGCAGTTCTTCTTGTCCATCCCATAGAGCCAGAATTTGAGGGAGAGGTCGATGACAAATATCAATACTCCTGCGAGAACCAGAATCTGCAAGTGCATGGTTGGATATGCATGGATCCACCCGTCGGGTTCTGGCAAATAACACCCAGCAATGAGTTCCGATCTGGTGGACCTCTTAAACAGAACCTCACCTCCCATGTTGGCCCAACTTGTCTTGCAATGTTTCTCAGTGCTCACTATTCAGGAGAGGACCTTGTGCTAAAGCTCAAACCAGATGAGCCATGGAAGAAGGTGTTTGGCCCTATTTTTATCTATCTTAATTCGGCGCCGGATGCAAAAGACTCGTTGTCACTCTGGGAGGATGCAAAGGCACAGATGATGACAGAAGTACAAAGTTGGCCGTACGAGTTTCCAGCATCTCATGACTTTCCACCATCAGATCAACGGGGTAATCTTAGTGGCAGAATACGCGTTCAAGATAGGTACGTAAGCGATACTTATATACTCGCCAACGGTGCTTACGTGGGCTTGGCACCTCCGGGAGACGCTGGATCATGGCAGAGAGATTGCAAGGGCTACCAGTTCTGGACTAGGGCAGATCAGAATGGTTATTACTCTATAAATGATATACGTGAGGGCAACTACGATCTTTATGCATGGGTTCCTGGTTTTATAGGAGATTATCGATATGATGAAACCATTAACGTAACCGCAGGTTGTGATATTGACATTGGTGATATTGTATATGAACCACCAAGGAGTGGACCAACATTGTGGGAAATTGGCATCCCTGATCGTTCTGCTGCTGAATTTTATGTCCCAGATCCTAATCCAAAGTATATCAATAAGCTATATGTCAACCATCCTGACAGGTTTAGGCAGTATGGTTTATGGGAAAGATATGCAGACTTATATCCTGAGGAGGATTTAGTGTTTACAGTTGGTGTTAGTGATTATACTAGAGACTGGTTCTTTGCTCACGTTACCAGGTCAATTGTTCTGAGAAACAGGAAGAAGGATGATGGCAAGTATCAAAGCACTACGTGGCAAATAAAGTTTCGACTTGACAATGTCAGTCAGACCAAAACATACACACTTCGAATTGCCCTTGCTACTGCAAACGTTGCAGAACTACAGATTCGCGTAAATGATTCCAAGACAGATTCACCTGTATTTACGACCGGTGTGATCGGACACGACAACACAATTTGCAGACATGGAATTCATGGTCTCTACCGGCTGTATACAATAGACGTACCCGGCACATTGCTTGTGGAAGGAGACAACATAGTGTTTCTAACCCAAGCAATGAGCACCAGCCCTTTCCAGGGACTCATGTATGACTATATCCGTTTAGAAGGTCCATCAACTTCTATTTCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

530

Amino Acids

60.93

Weight (kDa)

5.15

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhamnogal_lyase	PF06045	1 - 86	2.7e-35	Rhamnogalacturonate lyase family
fn3_3	PF14686	240 - 312	4.2e-27	Polysaccharide lyase family 4, domain II
CBM-like	PF14683	326 - 521	6.6e-54	Polysaccharide lyase family 4, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24430 AT4G24430
fragaria_vesca	FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34131 FvH4_5g34150
malus_domestica	MD08G1204400.v1.1 MD08G1205000.v1.1
prunus_persica	Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536600_v2.0.a1 Prupe.1G536700_v2.0.a1 Prupe.1G536700_v2.0.a1
pyrus_communis	pycom08g17670 pycom08g17720
rosa_chinensis	RchiOBHm_Chr7g0233711 RchiOBHm_Chr7g0233721 RchiOBHm_Chr7g0233731 RchiOBHm_Chr7g0233741
rosa_laevigata	RLG00000001237 RLG00000001239 RLG00000001240
rosa_multiflora	Rmu_sc0000740.1_g000047 Rmu_sc0000740.1_g000058 Rmu_sc0010145.1_g000001 Rmu_sc0011583.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227030 Rroxscaffold_3G00227050 Rroxscaffold_3G00227070
rosa_rugosa	Rorug07G0282300 Rorug07G0282300
rosa_samantha	Rh7AG438600 Rh7AG438700 Rh7BG411300 Rh7CG458200 Rh7CG458300 Rh7CG458400 Rh7DG428200
rosa_wichuraiana	Rw7G036170 Rw7G036180 Rw7G036230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	911
AccB1I	GGYRCC	2 cut(s)	532, 739
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	1451
AccII	CGCG	2 cut(s)	678, 1350
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	4 cut(s)	77, 134, 158, 918
AclI	AACGTT	1 cut(s)	1329
AclWI	GGATC	4 cut(s)	317, 330, 766, 1025
AcoI	YGGCCR	2 cut(s)	126, 605
AcsI	RAATTY	3 cut(s)	242, 1016, 1428
AcyI	GRCGYC	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	1251
AfaI	GTAC	5 cut(s)	122, 597, 611, 692, 1464
AfiI	CCNNNNNNNGG	4 cut(s)	332, 968, 1534, 1535
AflIII	ACRYGT	1 cut(s)	676
AgeI	ACCGGT	1 cut(s)	1388
AgsI	TTSAA	3 cut(s)	52, 97, 683
AhdI	GACNNNNNGTC	1 cut(s)	553
AjnI	CCWGG	4 cut(s)	83, 871, 1193, 1533
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AluBI	AGCT	3 cut(s)	100, 472, 1057
AluI	AGCT	3 cut(s)	100, 472, 1057
Alw21I	GWGCWC	3 cut(s)	48, 442, 1523
Alw26I	GTCTC	4 cut(s)	744, 1164, 1442, 1482
AlwI	GGATC	4 cut(s)	317, 330, 766, 1025
AlwNI	CAGNNNCTG	1 cut(s)	295
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	5 cut(s)	59, 126, 409, 505, 605
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	3 cut(s)	242, 1016, 1428
ArsI	GACNNNNNNTTYG	2 cut(s)	1163, 1195
AsiGI	ACCGGT	1 cut(s)	1388
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	6 cut(s)	377, 410, 457, 506, 971, 1568
AsuC2I	CCSGG	2 cut(s)	747, 1467
AsuHPI	GGTGA	3 cut(s)	388, 953, 1365
AsuII	TTCGAA	1 cut(s)	1306
AvaII	GGWCC	4 cut(s)	377, 457, 971, 1568
AxyI	CCTNAGG	1 cut(s)	1125
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	322
BanI	GGYRCC	2 cut(s)	532, 739
Bbv12I	GWGCWC	3 cut(s)	48, 442, 1523
BbvI	GCAGC	1 cut(s)	997
BccI	CCATC	6 cut(s)	44, 234, 649, 1077, 1223, 1579
BceAI	ACGGC	1 cut(s)	592
BcgI	CGANNNNNNTGC	4 cut(s)	531, 565, 842, 876
BciT130I	CCWGG	4 cut(s)	85, 873, 1195, 1535
BcnI	CCSGG	2 cut(s)	747, 1467
BcoDI	GTCTC	4 cut(s)	744, 1164, 1442, 1482
BfaI	CTAG	2 cut(s)	798, 1167
BfmI	CTRYAG	1 cut(s)	1340
BfoI	RGCGCY	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	911
BisI	GCNGC	2 cut(s)	158, 1011
BlsI	GCNGC	2 cut(s)	159, 1012
Bme1390I	CCNGG	6 cut(s)	85, 747, 873, 1195, 1467, 1535
Bme18I	GGWCC	4 cut(s)	377, 457, 971, 1568
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmgT120I	GGNCC	6 cut(s)	377, 410, 457, 506, 971, 1568
BmiI	GGNNCC	4 cut(s)	324, 534, 741, 870
BmrFI	CCNGG	6 cut(s)	85, 747, 873, 1195, 1467, 1535
BmsI	GCATC	4 cut(s)	529, 559, 632, 1002
Bpu14I	TTCGAA	1 cut(s)	1306
BpuMI	CCSGG	2 cut(s)	747, 1467
Bsa29I	ATCGAT	1 cut(s)	892
BsaAI	YACGTR	4 cut(s)	694, 730, 839, 1251
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	1442
BsaJI	CCNNGG	3 cut(s)	488, 962, 1534
BsaWI	WCCGGW	2 cut(s)	163, 1388
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 968, 1534, 1535
Bse118I	RCCGGY	2 cut(s)	1388, 1443
Bse1I	ACTGG	2 cut(s)	787, 1178
Bse21I	CCTNAGG	1 cut(s)	1125
Bse3DI	GCAATG	4 cut(s)	364, 432, 1472, 1521
Bse8I	GATNNNNATC	1 cut(s)	1035
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	4 cut(s)	85, 873, 1195, 1535
BseCI	ATCGAT	1 cut(s)	892
BseDI	CCNNGG	3 cut(s)	488, 962, 1534
BseGI	GGATG	7 cut(s)	172, 226, 544, 574, 993, 1069, 1231
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	4 cut(s)	332, 968, 1534, 1535
BseMI	GCAATG	4 cut(s)	364, 432, 1472, 1521
BseMII	CTCAG	4 cut(s)	115, 448, 1116, 1199
BseNI	ACTGG	2 cut(s)	787, 1178
BseRI	GAGGAG	1 cut(s)	1142
BseXI	GCAGC	1 cut(s)	997
BseYI	CCCAGC	1 cut(s)	353
Bsh1236I	CGCG	2 cut(s)	678, 1350
Bsh1285I	CGRYCG	1 cut(s)	1389
BshFI	GGCC	5 cut(s)	61, 128, 411, 507, 607
BshNI	GGYRCC	2 cut(s)	532, 739
BshTI	ACCGGT	1 cut(s)	1388
BshVI	ATCGAT	1 cut(s)	892
BsiEI	CGRYCG	1 cut(s)	1389
BsiHKAI	GWGCWC	3 cut(s)	48, 442, 1523
BsiSI	CCGG	6 cut(s)	164, 536, 746, 1389, 1444, 1467
BsiWI	CGTACG	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	1010, 1551
BslI	CCNNNNNNNGG	4 cut(s)	332, 968, 1534, 1535
BsmAI	GTCTC	4 cut(s)	744, 1164, 1442, 1482
BsmBI	CGTCTC	1 cut(s)	744
BsmFI	GGGAC	2 cut(s)	1010, 1551
BsnI	GGCC	5 cut(s)	61, 128, 411, 507, 607
Bso31I	GGTCTC	1 cut(s)	1442
Bsp119I	TTCGAA	1 cut(s)	1306
Bsp1286I	GDGCHC	3 cut(s)	48, 442, 1523
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	4 cut(s)	77, 134, 158, 918
BspANI	GGCC	5 cut(s)	61, 128, 411, 507, 607
BspCNI	CTCAG	4 cut(s)	114, 447, 1117, 1200
BspDI	ATCGAT	1 cut(s)	892
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	678, 1350
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	4 cut(s)	324, 534, 741, 870
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	4 cut(s)	317, 330, 766, 1025
BspT104I	TTCGAA	1 cut(s)	1306
BspT107I	GGYRCC	2 cut(s)	532, 739
BspTNI	GGTCTC	1 cut(s)	1442
BsrDI	GCAATG	4 cut(s)	364, 432, 1472, 1521
BsrFI	RCCGGY	2 cut(s)	1388, 1443
BsrI	ACTGG	2 cut(s)	787, 1178
BssAI	RCCGGY	2 cut(s)	1388, 1443
BssECI	CCNNGG	3 cut(s)	488, 962, 1534
BssMI	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
BssNAI	GTATAC	1 cut(s)	1452
BssNI	GRCGYC	1 cut(s)	533
BssT1I	CCWWGG	2 cut(s)	488, 962
Bst1107I	GTATAC	1 cut(s)	1452
Bst2UI	CCWGG	4 cut(s)	85, 873, 1195, 1535
Bst4CI	ACNGT	2 cut(s)	722, 1147
BstACI	GRCGYC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstBAI	YACGTR	4 cut(s)	694, 730, 839, 1251
BstBI	TTCGAA	1 cut(s)	1306
BstDEI	CTNAG	5 cut(s)	101, 434, 662, 1125, 1208
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	7 cut(s)	172, 226, 544, 574, 993, 1069, 1231
BstFNI	CGCG	2 cut(s)	678, 1350
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	9 cut(s)	325, 371, 649, 761, 808, 856, 1003, 1033, 1398
BstMAI	GTCTC	4 cut(s)	744, 1164, 1442, 1482
BstMBI	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
BstMCI	CGRYCG	1 cut(s)	1389
BstMWI	GCNNNNNNNGC	4 cut(s)	539, 675, 722, 1331
BstNI	CCWGG	4 cut(s)	85, 873, 1195, 1535
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	6 cut(s)	83, 745, 871, 1193, 1465, 1533
BstSFI	CTRYAG	1 cut(s)	1340
BstSNI	TACGTA	1 cut(s)	694
BstUI	CGCG	2 cut(s)	678, 1350
BstV1I	GCAGC	1 cut(s)	997
BstX2I	RGATCY	2 cut(s)	322, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	981
BstYI	RGATCY	2 cut(s)	322, 1030
BstZ17I	GTATAC	1 cut(s)	1452
Bsu15I	ATCGAT	1 cut(s)	892
Bsu36I	CCTNAGG	1 cut(s)	1125
BsuRI	GGCC	5 cut(s)	61, 128, 411, 507, 607
BsuTUI	ATCGAT	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	7 cut(s)	172, 226, 544, 574, 993, 1069, 1231
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	911
CaiI	CAGNNNCTG	1 cut(s)	295
CciI	TCATGA	1 cut(s)	628
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	2 cut(s)	1388, 1443
Cfr13I	GGNCC	6 cut(s)	377, 410, 457, 506, 971, 1568
ClaI	ATCGAT	1 cut(s)	892
CseI	GACGC	1 cut(s)	761
CsiI	ACCWGGT	1 cut(s)	1193
Csp6I	GTAC	5 cut(s)	121, 596, 610, 691, 1463
CspAI	ACCGGT	1 cut(s)	1388
CviQI	GTAC	5 cut(s)	121, 596, 610, 691, 1463
DdeI	CTNAG	5 cut(s)	101, 434, 662, 1125, 1208
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	9 cut(s)	324, 370, 648, 760, 807, 855, 1002, 1032, 1397
DpnII	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
DraIII	CACNNNGTG	1 cut(s)	1251
DriI	GACNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	2 cut(s)	126, 605
Eam1105I	GACNNNNNGTC	1 cut(s)	553
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	488, 962
Eco31I	GGTCTC	1 cut(s)	1442
Eco47I	GGWCC	4 cut(s)	377, 457, 971, 1568
Eco81I	CCTNAGG	1 cut(s)	1125
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	1428
EcoRII	CCWGG	4 cut(s)	83, 871, 1193, 1533
EcoT14I	CCWWGG	2 cut(s)	488, 962
EcoT22I	ATGCAT	2 cut(s)	320, 865
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
ErhI	CCWWGG	2 cut(s)	488, 962
Esp3I	CGTCTC	1 cut(s)	744
FalI	AAGNNNNNCTT	2 cut(s)	688, 720
FaqI	GGGAC	2 cut(s)	1010, 1551
FblI	GTMKAC	1 cut(s)	1451
Fnu4HI	GCNGC	2 cut(s)	158, 1011
FokI	GGATG	7 cut(s)	179, 213, 551, 581, 980, 1056, 1238
Fsp4HI	GCNGC	2 cut(s)	158, 1011
FspBI	CTAG	2 cut(s)	798, 1167
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	2 cut(s)	158, 1011
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	5 cut(s)	61, 128, 411, 507, 607
HapII	CCGG	6 cut(s)	164, 536, 746, 1389, 1444, 1467
HgaI	GACGC	1 cut(s)	761
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	533
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	1066
HindII	GTYRAC	1 cut(s)	1066
HinfI	GANTC	6 cut(s)	292, 548, 1345, 1358, 1370, 1539
HpaII	CCGG	6 cut(s)	164, 536, 746, 1389, 1444, 1467
HphI	GGTGA	3 cut(s)	388, 953, 1365
Hpy166II	GTNNAC	5 cut(s)	377, 971, 1066, 1143, 1452
Hpy188I	TCNGA	6 cut(s)	368, 646, 810, 1209, 1287, 1400
Hpy188III	TCNNGA	9 cut(s)	107, 164, 206, 450, 629, 683, 793, 1073, 1124
Hpy8I	GTNNAC	5 cut(s)	377, 971, 1066, 1143, 1452
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	5 cut(s)	83, 490, 1216, 1478, 1559
HpyCH4III	ACNGT	2 cut(s)	722, 1147
HpyCH4IV	ACGT	8 cut(s)	693, 729, 838, 912, 1188, 1250, 1329, 1461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	539, 675, 722, 1331
HpyF3I	CTNAG	5 cut(s)	101, 434, 662, 1125, 1208
HpySE526I	ACGT	8 cut(s)	693, 729, 838, 912, 1188, 1250, 1329, 1461
Hsp92I	GRCGYC	1 cut(s)	533
HspAI	GCGC	1 cut(s)	533
KasI	GGCGCC	1 cut(s)	532
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
Lsp1109I	GCAGC	1 cut(s)	997
LweI	GCATC	4 cut(s)	529, 559, 632, 1002
MabI	ACCWGGT	1 cut(s)	1193
MaeI	CTAG	2 cut(s)	798, 1167
MaeII	ACGT	8 cut(s)	693, 729, 838, 912, 1188, 1250, 1329, 1461
MaeIII	GTNAC	3 cut(s)	555, 913, 1189
MalI	GATC	9 cut(s)	324, 370, 648, 760, 807, 855, 1002, 1032, 1397
MboI	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
MboII	GAAGA	3 cut(s)	209, 505, 1231
MfeI	CAATTG	1 cut(s)	1200
MflI	RGATCY	2 cut(s)	322, 1030
MhlI	GDGCHC	3 cut(s)	48, 442, 1523
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	9 cut(s)	10, 242, 526, 987, 1016, 1200, 1308, 1413, 1428
MluI	ACGCGT	1 cut(s)	676
MluNI	TGGCCA	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	542, 1533
MmeI	TCCRAC	1 cut(s)	290
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	2 cut(s)	320, 865
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	4 cut(s)	69, 384, 525, 909
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	6 cut(s)	164, 536, 746, 1389, 1444, 1467
MspR9I	CCNGG	6 cut(s)	85, 747, 873, 1195, 1467, 1535
MunI	CAATTG	1 cut(s)	1200
MvaI	CCWGG	4 cut(s)	85, 873, 1195, 1535
MvnI	CGCG	2 cut(s)	678, 1350
MwoI	GCNNNNNNNGC	4 cut(s)	539, 675, 722, 1331
NarI	GGCGCC	1 cut(s)	533
NciI	CCSGG	2 cut(s)	747, 1467
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
NlaIV	GGNNCC	4 cut(s)	324, 534, 741, 870
NmuCI	GTSAC	1 cut(s)	555
NsiI	ATGCAT	2 cut(s)	320, 865
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	1306
PagI	TCATGA	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	292, 1345, 1358, 1370
Pfl23II	CGTACG	1 cut(s)	609
PflFI	GACNNNGTC	1 cut(s)	1277
PflMI	CCANNNNNTGG	1 cut(s)	968
PfoI	TCCNGGA	1 cut(s)	745
PinAI	ACCGGT	1 cut(s)	1388
PkrI	GCNGC	2 cut(s)	159, 1012
PleI	GAGTC	2 cut(s)	542, 1533
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	2 cut(s)	542, 1533
Ppu21I	YACGTR	4 cut(s)	694, 730, 839, 1251
PpuMI	RGGWCCY	1 cut(s)	457
Psp1406I	AACGTT	1 cut(s)	1329
Psp5II	RGGWCCY	1 cut(s)	457
Psp6I	CCWGG	4 cut(s)	83, 871, 1193, 1533
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	4 cut(s)	83, 871, 1193, 1533
PspLI	CGTACG	1 cut(s)	609
PspN4I	GGNNCC	4 cut(s)	324, 534, 741, 870
PspPI	GGNCC	6 cut(s)	377, 410, 457, 506, 971, 1568
PspPPI	RGGWCCY	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	322, 1030
PsyI	GACNNNGTC	1 cut(s)	1277
RsaI	GTAC	5 cut(s)	122, 597, 611, 692, 1464
RsaNI	GTAC	5 cut(s)	121, 596, 610, 691, 1463
SaqAI	TTAA	4 cut(s)	69, 384, 525, 909
SatI	GCNGC	2 cut(s)	158, 1011
Sau3AI	GATC	9 cut(s)	322, 368, 646, 758, 805, 853, 1000, 1030, 1395
Sau96I	GGNCC	6 cut(s)	377, 410, 457, 506, 971, 1568
SchI	GAGTC	2 cut(s)	542, 1533
ScrFI	CCNGG	6 cut(s)	85, 747, 873, 1195, 1467, 1535
SduI	GDGCHC	3 cut(s)	48, 442, 1523
SexAI	ACCWGGT	1 cut(s)	1193
SfaNI	GCATC	4 cut(s)	529, 559, 632, 1002
SfcI	CTRYAG	1 cut(s)	1340
SfoI	GGCGCC	1 cut(s)	534
SfuI	TTCGAA	1 cut(s)	1306
SinI	GGWCC	4 cut(s)	377, 457, 971, 1568
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	9 cut(s)	10, 242, 526, 987, 1016, 1200, 1308, 1413, 1428
SsiI	CCGC	4 cut(s)	77, 134, 158, 918
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	2 cut(s)	798, 1167
StyD4I	CCNGG	6 cut(s)	83, 745, 871, 1193, 1465, 1533
StyI	CCWWGG	2 cut(s)	488, 962
TaaI	ACNGT	2 cut(s)	722, 1147
TaiI	ACGT	8 cut(s)	696, 732, 841, 915, 1191, 1253, 1332, 1464
TaqI	TCGA	4 cut(s)	258, 892, 1267, 1306
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	9 cut(s)	10, 242, 526, 987, 1016, 1200, 1308, 1413, 1428
TatI	WGTACW	1 cut(s)	595
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	4 cut(s)	292, 1345, 1358, 1370
Tru1I	TTAA	4 cut(s)	69, 384, 525, 909
Tru9I	TTAA	4 cut(s)	69, 384, 525, 909
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	555
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	1 cut(s)	555
TspDTI	ATGAA	3 cut(s)	915, 969, 1421
TspGWI	ACGGA	1 cut(s)	1547
TspRI	CASTG	1 cut(s)	442
Tth111I	GACNNNGTC	1 cut(s)	1277
Van91I	CCANNNNNTGG	1 cut(s)	968
VpaK11BI	GGWCC	4 cut(s)	377, 457, 971, 1568
XapI	RAATTY	3 cut(s)	242, 1016, 1428
XceI	RCATGY	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XmiI	GTMKAC	1 cut(s)	1451
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	798, 1167
Zsp2I	ATGCAT	2 cut(s)	320, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.