RchiOBHm_Chr7g0233731

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002285
Physical Location & Seq
Forward (+)
58262266 .. 58262773
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20950

Sequence Viewer

Length: 228 bp
ATGCACAAACTGCAGGTTATAATGGATAACGGCATACTCCAAGTTACACTGTCAAAACCAGGTGGAATTGTAACTGGAATACAATATAATGGCATCAACAATTTGCTTGAAGTTCAGAATACAGAAACTAATAGAGGGTATTGGGACCTTGTTTGGAGTGAAGCAGGAAGTGTCGGAACAACCGGAACATTTGATGTAGGGTGGGTATGGGAGTTTGGGTATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

75

Amino Acids

8.33

Weight (kDa)

4.43

Isoelectric Point (pI)

10.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 4 - 63 3.4e-24 Rhamnogalacturonate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 4
AgsI TTSAA 1 cut(s) 110
AjnI CCWGG 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 4
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 146
BspMAI CTGCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 145
CsiI ACCWGGT 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 58
FaiI YATR 5 cut(s) 20, 35, 87, 208, 226
FaqI GGGAC 1 cut(s) 158
HapII CCGG 1 cut(s) 183
HpaII CCGG 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 117, 176
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 4, 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 45, 60, 72, 150, 196
LweI GCATC 1 cut(s) 102
MabI ACCWGGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 43, 70
MluCI AATT 2 cut(s) 66, 100
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 128
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 145
PsiI TTATAA 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 60
SetI ASST 3 cut(s) 18, 64, 150
SexAI ACCWGGT 1 cut(s) 58
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 11
SgeI CNNG 9 cut(s) 26, 53, 71, 72, 87, 119, 161, 177, 195
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 66, 100
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 51
TasI AATT 2 cut(s) 66, 100
TscAI CASTG 1 cut(s) 54
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.