Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002867

Physical Location & Seq

Genomic Coordinates Forward (+)

20059971 .. 20061902

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGATGGGATGGACTTAACACCCAAGTCAGCCCAGAAGTTGTTTGAAGGAGATGGAGGAGCATATTACATTTGGTCGAGTTCAGATGTTCCGGTGCTTGCTGAGGCCAAGGTTGGTGCAGGCAAGCTTGTTCTTCAACCTCATGGCTTCGCTCTTCCTCACCATGCAGATTCCTCCAAACTGGGATATGTTCTTCAAGGTAATGATGGATTAGTTGGAATGGTCTTCCCTAACACATCAGAGGAGGTGGTGGTTAGGGTTAAGAATGGAGATGTGATACCATTACCAGTTGGAACAATCTCATGGTGGTTCAACAATGTTGATCACTCCGAGGAGCTTGTTGTTATTTTCATGGGTGAAACTGCCGGAGCCCATGTTCCCGGTCAATTTTCGTACTTTTTTATTGCCGGAACCCTAAGTCTACTTGCAGGTTTCTCAACAGAATTTGTCAGCAAGTCCTTCAACATCACCAAGGATGAAGCTGATGGCATCACCAAAAGCCAGACTGGGGTTTTGATCATCAAGCTAGGTCAAGATGAAAAGGTCAAAATGCCCCTCCCCAATCTAAAACTCACGGACAAATTTGTTCACAACATCAGTACTAGTAGTACAACTACATTAACTGAAAAGGAATTTCCTTTTCTTAAACAAGCTGGGTTAAGTGTTAACCTCACAAAACTTGAGGCCAACGCAATCAGCTCTCCAATCTACACAGCCGATTCCACAGTCCAAGTGATTTATGTTGCTCGAGGGAGTGGCCGGATACAGATCGTGGGTGTTAACGGTCAACGTTTGTTGGACGCAGAGGTAACTGCCGGGCAGCTGCTTGTGGTACCGACGTTCTTCATGGTTGCTAAACTTGCAGGACATAATGGGTTGGAGTGTTTCGCTCTCATGACTAGTTCTCAGCCTCTCGTGGAAGACTTAGCTGGAAAGACATCAGCATTGGGAGCATTATCACCGGAGGTGCTGCGAATATCCCTTAATATAACTCCAGAGCTAGAAAAACTTCTCAAGTCCAAGATTCGAAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

346

Amino Acids

37.04

Weight (kDa)

5.84

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	11 - 161	2.4e-16	Cupin
Cupin_1	PF00190	198 - 334	8.9e-20	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g29270
malus_domestica	MD08G1231900.v1.1 MD08G1232200.v1.1 MD08G1232300.v1.1
prunus_persica	Prupe.1G570700_v2.0.a1 Prupe.1G570800_v2.0.a1 Prupe.1G570800_v2.0.a1
pyrus_communis	pycom08g20170 pycom08g20180
rosa_chinensis	RchiOBHm_Chr7g0198921 RchiOBHm_Chr7g0222091 RchiOBHm_Chr7g0222101
rosa_laevigata	RLG00000002097 RLG00000002098 RLG00000002099 RLG00000002100 RLG00000003833
rosa_multiflora	Rmu_sc0001971.1_g000003 Rmu_sc0001971.1_g000010 Rmu_sc0006266.1_g000001 Rmu_sc0010595.1_g000001 Rmu_sc0028162.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237470 Rroxscaffold_3G00257310
rosa_rugosa	Rorug07G0050700 Rorug07G0205300
rosa_samantha	Rh7AG174400 Rh7AG345800 Rh7AG346500 Rh7BG177500 Rh7BG336400 Rh7CG183500 Rh7CG363400 Rh7CG363700 Rh7DG176900 Rh7DG344100 Rh7DG344200
rosa_wichuraiana	Rw7G029330 Rw7G029350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	832
AccB1I	GGYRCC	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	421
AclI	AACGTT	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	3 cut(s)	443, 581, 632
AfaI	GTAC	4 cut(s)	395, 601, 610, 834
AfiI	CCNNNNNNNGG	1 cut(s)	508
AgsI	TTSAA	5 cut(s)	47, 137, 197, 313, 463
AhlI	ACTAGT	2 cut(s)	602, 899
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	9 cut(s)	127, 337, 482, 526, 653, 699, 823, 929, 1000
AluI	AGCT	9 cut(s)	127, 337, 482, 526, 653, 699, 823, 929, 1000
Ama87I	CYCGRG	1 cut(s)	747
AoxI	GGCC	3 cut(s)	105, 684, 757
ApeKI	GCWGC	3 cut(s)	820, 823, 970
ApoI	RAATTY	3 cut(s)	443, 581, 632
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
Asp700I	GAANNNNTTC	1 cut(s)	1008
Asp718I	GGTACC	1 cut(s)	832
AsuC2I	CCSGG	2 cut(s)	381, 817
AsuHPI	GGTGA	5 cut(s)	152, 368, 460, 484, 951
AsuII	TTCGAA	1 cut(s)	1027
AvaI	CYCGRG	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BanI	GGYRCC	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	373
BauI	CACGAG	1 cut(s)	914
BbsI	GAAGAC	2 cut(s)	217, 927
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	810, 832, 957
BccI	CCATC	4 cut(s)	4, 47, 200, 479
BciVI	GTATCC	1 cut(s)	756
BclI	TGATCA	2 cut(s)	322, 516
BcnI	CCSGG	2 cut(s)	381, 817
BcuI	ACTAGT	2 cut(s)	602, 899
BfaI	CTAG	4 cut(s)	527, 603, 900, 1001
BfuAI	ACCTGC	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	756
BisI	GCNGC	3 cut(s)	821, 824, 971
BlsI	GCNGC	3 cut(s)	822, 825, 972
BmcAI	AGTACT	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	381, 817
BmeT110I	CYCGRG	1 cut(s)	747
BmiI	GGNNCC	3 cut(s)	370, 412, 834
BmrFI	CCNGG	2 cut(s)	381, 817
BmrI	ACTGGG	2 cut(s)	191, 516
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	2 cut(s)	191, 516
BpiI	GAAGAC	2 cut(s)	217, 927
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	1027
BpuEI	CTTGAG	2 cut(s)	701, 998
BpuMI	CCSGG	2 cut(s)	381, 817
BsaBI	GATNNNNATC	1 cut(s)	767
BsaJI	CCNNGG	3 cut(s)	108, 330, 471
BsaWI	WCCGGW	2 cut(s)	91, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	186, 287, 511
Bse8I	GATNNNNATC	1 cut(s)	767
BseDI	CCNNGG	3 cut(s)	108, 330, 471
BseGI	GGATG	3 cut(s)	10, 15, 481
BseJI	GATNNNNATC	1 cut(s)	767
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	93, 920
BseNI	ACTGG	3 cut(s)	186, 287, 511
BseRI	GAGGAG	3 cut(s)	72, 257, 347
BseXI	GCAGC	3 cut(s)	810, 832, 957
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	3 cut(s)	107, 686, 759
BshNI	GGYRCC	1 cut(s)	832
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	7 cut(s)	92, 366, 381, 408, 760, 816, 962
BslI	CCNNNNNNNGG	1 cut(s)	508
BsnI	GGCC	3 cut(s)	107, 686, 759
BsoBI	CYCGRG	1 cut(s)	747
Bsp119I	TTCGAA	1 cut(s)	1027
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	322, 516, 768
BspANI	GGCC	3 cut(s)	107, 686, 759
BspCNI	CTCAG	2 cut(s)	94, 919
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	3 cut(s)	370, 412, 834
BspMI	ACCTGC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	1027
BspT107I	GGYRCC	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	186, 287, 511
BssECI	CCNNGG	3 cut(s)	108, 330, 471
BssMI	GATC	3 cut(s)	322, 516, 768
BssSI	CACGAG	1 cut(s)	914
BssT1I	CCWWGG	2 cut(s)	108, 471
Bst2BI	CACGAG	1 cut(s)	914
Bst4CI	ACNGT	2 cut(s)	727, 785
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	1027
BstC8I	GCNNGC	3 cut(s)	99, 121, 125
BstDEI	CTNAG	4 cut(s)	102, 416, 906, 925
BstF5I	GGATG	3 cut(s)	10, 15, 481
BstKTI	GATC	3 cut(s)	325, 519, 771
BstMBI	GATC	3 cut(s)	322, 516, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	860, 950
BstSCI	CCNGG	2 cut(s)	379, 815
BstV1I	GCAGC	3 cut(s)	810, 832, 957
BstV2I	GAAGAC	2 cut(s)	217, 927
BsuI	GTATCC	1 cut(s)	756
BsuRI	GGCC	3 cut(s)	107, 686, 759
BtsCI	GGATG	3 cut(s)	10, 15, 481
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	99, 121, 125
CciI	TCATGA	1 cut(s)	894
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	4 cut(s)	394, 600, 609, 833
CviAII	CATG	7 cut(s)	143, 164, 303, 352, 374, 847, 895
CviQI	GTAC	4 cut(s)	394, 600, 609, 833
DdeI	CTNAG	4 cut(s)	102, 416, 906, 925
DpnI	GATC	3 cut(s)	324, 518, 770
DpnII	GATC	3 cut(s)	322, 516, 768
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	108, 471
Eco24I	GRGCYC	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	747
EcoT14I	CCWWGG	2 cut(s)	108, 471
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	108, 471
FaeI	CATG	7 cut(s)	146, 167, 306, 355, 377, 850, 898
FatI	CATG	7 cut(s)	142, 163, 302, 351, 373, 846, 894
FbaI	TGATCA	2 cut(s)	322, 516
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	821, 824, 971
FokI	GGATG	3 cut(s)	17, 22, 488
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	821, 824, 971
FspBI	CTAG	4 cut(s)	527, 603, 900, 1001
GluI	GCNGC	3 cut(s)	821, 824, 971
GsaI	CCCAGC	1 cut(s)	657
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	107, 686, 759
HapII	CCGG	7 cut(s)	92, 366, 381, 408, 760, 816, 962
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	7 cut(s)	146, 167, 306, 355, 377, 850, 898
HincII	GTYRAC	3 cut(s)	667, 781, 788
HindII	GTYRAC	3 cut(s)	667, 781, 788
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	3 cut(s)	170, 719, 1024
HpaI	GTTAAC	2 cut(s)	667, 781
HpaII	CCGG	7 cut(s)	92, 366, 381, 408, 760, 816, 962
HphI	GGTGA	5 cut(s)	152, 368, 460, 484, 951
Hpy166II	GTNNAC	5 cut(s)	422, 589, 667, 781, 788
Hpy188I	TCNGA	4 cut(s)	85, 241, 331, 1037
Hpy188III	TCNNGA	3 cut(s)	533, 895, 995
Hpy8I	GTNNAC	5 cut(s)	422, 589, 667, 781, 788
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	3 cut(s)	41, 469, 1023
HpyCH4III	ACNGT	2 cut(s)	727, 785
HpyCH4IV	ACGT	2 cut(s)	790, 839
HpyCH4V	TGCA	4 cut(s)	119, 167, 428, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	860, 950
HpyF3I	CTNAG	4 cut(s)	102, 416, 906, 925
HpySE526I	ACGT	2 cut(s)	790, 839
Hsp92II	CATG	7 cut(s)	146, 167, 306, 355, 377, 850, 898
KpnI	GGTACC	1 cut(s)	836
Ksp22I	TGATCA	2 cut(s)	322, 516
KspAI	GTTAAC	2 cut(s)	667, 781
Kzo9I	GATC	3 cut(s)	322, 516, 768
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	59, 334, 368, 950
Lsp1109I	GCAGC	3 cut(s)	810, 832, 957
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	4 cut(s)	527, 603, 900, 1001
MaeII	ACGT	2 cut(s)	790, 839
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	3 cut(s)	324, 518, 770
MboI	GATC	3 cut(s)	322, 516, 768
MboII	GAAGA	6 cut(s)	125, 146, 185, 217, 835, 932
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	386, 443, 581, 632
MmeI	TCCRAC	4 cut(s)	196, 271, 777, 858
MroXI	GAANNNNTTC	1 cut(s)	1008
MseI	TTAA	8 cut(s)	17, 261, 620, 645, 659, 666, 780, 984
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	7 cut(s)	92, 366, 381, 408, 760, 816, 962
MspR9I	CCNGG	2 cut(s)	381, 817
MwoI	GCNNNNNNNGC	2 cut(s)	860, 950
NciI	CCSGG	2 cut(s)	381, 817
NdeII	GATC	3 cut(s)	322, 516, 768
NlaIII	CATG	7 cut(s)	146, 167, 306, 355, 377, 850, 898
NlaIV	GGNNCC	3 cut(s)	370, 412, 834
NspV	TTCGAA	1 cut(s)	1027
PaeR7I	CTCGAG	1 cut(s)	747
PagI	TCATGA	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	3 cut(s)	170, 719, 1024
PkrI	GCNGC	3 cut(s)	822, 825, 972
Psp1406I	AACGTT	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	370, 412, 834
PspXI	VCTCGAGB	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	4 cut(s)	395, 601, 610, 834
RsaNI	GTAC	4 cut(s)	394, 600, 609, 833
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	8 cut(s)	17, 261, 620, 645, 659, 666, 780, 984
SatI	GCNGC	3 cut(s)	821, 824, 971
Sau3AI	GATC	3 cut(s)	322, 516, 768
ScaI	AGTACT	1 cut(s)	601
ScrFI	CCNGG	2 cut(s)	381, 817
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	747
SfuI	TTCGAA	1 cut(s)	1027
SlaI	CTCGAG	1 cut(s)	747
SmlI	CTYRAG	3 cut(s)	680, 747, 1013
SmoI	CTYRAG	3 cut(s)	680, 747, 1013
SpeI	ACTAGT	2 cut(s)	602, 899
Sse9I	AATT	4 cut(s)	386, 443, 581, 632
SspMI	CTAG	4 cut(s)	527, 603, 900, 1001
StyD4I	CCNGG	2 cut(s)	379, 815
StyI	CCWWGG	2 cut(s)	108, 471
TaaI	ACNGT	2 cut(s)	727, 785
TaiI	ACGT	2 cut(s)	793, 842
TaqI	TCGA	3 cut(s)	77, 748, 1027
TasI	AATT	4 cut(s)	386, 443, 581, 632
TatI	WGTACW	2 cut(s)	599, 608
TfiI	GAWTC	3 cut(s)	170, 719, 1024
Tru1I	TTAA	8 cut(s)	17, 261, 620, 645, 659, 666, 780, 984
Tru9I	TTAA	8 cut(s)	17, 261, 620, 645, 659, 666, 780, 984
TseI	GCWGC	3 cut(s)	820, 823, 970
TspDTI	ATGAA	4 cut(s)	340, 492, 552, 835
TspGWI	ACGGA	1 cut(s)	590
XapI	RAATTY	3 cut(s)	443, 581, 632
XhoI	CTCGAG	1 cut(s)	747
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	4 cut(s)	527, 603, 900, 1001
ZrmI	AGTACT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.