pycom09g19730

rRNA processing/ribosome biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0004705
Physical Location & Seq
Reverse (-)
20564965 .. 20572540
7576 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2619 bp
ATGTACGATGTTGCTCTAAGGCCTCGTCTGTTGCAAATGCTCGTAAGAGAACTCCCTGATGATAAACACCCGTCTGGGAGTCCGTTGGAGCTGTCGAAGGTAGTCTACGCGATCAAAACCCACAACCTCCTTTGTGAGCCTGCACAAGATGTGACTGACCAAAAGCTAATCACTACTTGGAAATCCGCTGCTGATTCCTGGGTCCGTCGCTTGGCGCAGCTTGTTTCCAGTGACATGCCAGATAAATGTTGGGAAGGAATTTGTTTGATGGGGGTGACTTGTCGGGAATGCAGCTCTGAGCGGTTCATGGAATCATACTCTGGTTGGTTCCAGATATTCCTATCACATATTCAGCAGTCTACAACTTCTCAATTTGTGAAGGTGGTCTCTTGTGCCTCGATGTCAGATCTCGTCACAAGGTTGGGTGGATCTCTAAATGCAAAAAGGGATGGAACTGCACATGCCGGGAAACTCGTTCAACAAGTTATTCAACCACTTTTGAAGTTGTTAGATGATGATCATTCGGAGGTTGTTTGGGAAGAAGCAGTTCAATTGTTATGCACAATTATATCTTTCTTTCCATTGAGCATCAATCGTCATTATGATAGTGTTGAAGATGTTATTGCTTCAACAATTTTGTCAGGAAAAGGAAGTGATAATATGCTGAAGAAACTTGCTTACTGTCTGGCATTACTACCAAAGTCAAGAGGGGATGAGGATAGCTGGTCCTTAATGATTCAAAAGATTTTATTGTTGATTAATGGTCACCTGAATGATGTTTTTCATGGGTTTGAGGAAGAAACAAAACGCCATGCAATTATTAGATTTTTGGTTCCCCCAGGGAAAGAACCCCCTCCTCGGTTGGGAGGAAGTAAAGTGTCAGGAAAAGATTCAACGAAGGGAAGAAAGAGTTCTCAGCGTTTGACAATGTCCAGTATCTCTGCACTGATGGTTTGCTGCTCTACAATGATAACAACTTCGTACCCTGTTCAGGTGACTGTTCCTATTCGGTCCTTATTTGCCCTTATTGAGAGAGTGCTGATTGTGGATGGTTCCCTGCCACAATCTCTGCTTCCCTTTATGACTGCCACACAGCAAGAGTTCATTTGTTCGGAACTACCACTTCTGCACCTGTATGGTTTAGAATTCCTCACTGCTATTATAGAGGGTGTGCGCAGTCAACTTTTACCACATGCTGCTTATTTAGTGCATCTGCTTTCAGTGTATTTAAAGAGATGTGCATTGCCAGAATTGAGGATAAAGGTCTACTTAATCACAAGAATGTTGCTGATATCCATGGGTGTTGGGATGACAGTAAGCCTGGCACGGGAAGTTGCTAACAACGCATTGATTGATCTGAGTCCCATTGTGAATGAGAGTGGTGGTGCACCTTCTAGTGGAATCTCGTCAAAGCCTTCTACTGAAGAATTGCTTCAAACACCGCAATCTAGCCATAGAAAGAGGAAGCATGGAGCTTCAAGCGGATCTCTTGAGTGGCGTAAGACTAGTAGTTTGGAAGAGGGGAACCCCAAGAACCATACGATATCTCCTATTCCTGTGAGAATCGCTGCACTTGAGGCATTAGAAGCTCTTGTCACTGTGGGTGGTGCATTGAAATCTGAAGGATGGCGATCTGATGTTGATCTTCTTCTGATGAACATAGCTACAAATTCTATGAAAGGGGGACAGGCTGGTAATAACAAAAACATTTACCAGCTGAATGAACCTGTTGATATTCGGGGTGATTTTCAGCTTGCTGCTCTACGTGCACTTTTGGCATCATTACTTTCTTCTTGTGTCCGCCCCCCTTATTTAGCTGAGGGTCTTGATCTTTTCCGTAGAGGCAAGCAAGCAACTGGAACCAAAGTTGCTGGATTTTGTGCTCATGCTCTTTTGAACTTAGAGGTCCTTATACATCCCAGGGCACTCCCACTGGCAGGTTTCTCTGATGGAGTTAGCCACAAGCTCCCAGAAAACATGTACTCTAGTAGTGTAAAGCACCGAACACCGTTTTCAAGTGACTTACAGGGAATGGTGTATGATGCTTCTGATTCAGATTGTGACGACCTATATAATAGCTGGCTTGCAACTGGTAAAGAAATGGAAGCACCGAGGAGTGACCTAGACAAGACTATGCAGGCTGGAGAGCCATCCAAAGCTCTAACAATTCATCGGGATAAAAAACTTGCTGTAGATGGTTCATTTGGTAAAGAGATTCTAGGAGGAAGTGCACGGGAACTGGAAGTACCCATTGAGGATGTGGAGATGAGAGTCAATGGGACTGAAAATATGGTTGAATCCTGCCAATTTCAAGAATCCGCAATGCAACTTGAGAATGATCTGTCTTCAAAAGGTGCCTCAGTGTCTCGAACTACAGTTGCTGAAGAAGTCTTTGGGAGGGTTTCGCTGGGAAATGGTCCATCAGATCAAGCAGGTAGCACTACGGTTACAAGCCATGATGTGGTGGTGGCTAAAGGTGATGGGTTTCTTGGCAGAGAGAGTAATTTGGCGTCTGCTTCAAATCCTGAGAAGGGCAAGGGAATTGCATATGAACTGGGTAATGATTCAGATGCGGATTCATTTCCTGATATTGTGGATCCAGATTCTGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RIX1

Protein Analysis

873

Amino Acids

95.07

Weight (kDa)

5.74

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIX1 PF08167 11 - 216 5.4e-33 rRNA processing/ribosome biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1175
Acc36I ACCTGC 2 cut(s) 1928, 2423
AccB1I GGYRCC 1 cut(s) 2354
AccB7I CCANNNNNTGG 1 cut(s) 2461
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 3 cut(s) 105, 359, 1266
AccII CGCG 1 cut(s) 110
AciI CCGC 7 cut(s) 186, 301, 1442, 1482, 1801, 2319, 2573
AclWI GGATC 4 cut(s) 436, 1492, 2591, 2604
AcsI RAATTY 3 cut(s) 258, 1145, 1669
AcuI CTGAAG 4 cut(s) 686, 1443, 1641, 2403
AcyI GRCGYC 1 cut(s) 2510
AfaI GTAC 4 cut(s) 5, 983, 1982, 2247
AfiI CCNNNNNNNGG 9 cut(s) 211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
AflIII ACRYGT 1 cut(s) 1977
AhlI ACTAGT 1 cut(s) 1505
AjnI CCWGG 4 cut(s) 197, 838, 1320, 1919
AjuI GAANNNNNNNTTGG 2 cut(s) 2376, 2408
Alw21I GWGCWC 4 cut(s) 1390, 1771, 1885, 2233
Alw26I GTCTC 2 cut(s) 391, 2370
Alw44I GTGCAC 3 cut(s) 1386, 1767, 2229
AlwI GGATC 4 cut(s) 436, 1492, 2591, 2604
AlwNI CAGNNNCTG 2 cut(s) 2381, 2606
AoxI GGCC 1 cut(s) 20
ApaLI GTGCAC 3 cut(s) 1386, 1767, 2229
ApeKI GCWGC 7 cut(s) 188, 217, 291, 957, 1196, 1568, 1757
ApoI RAATTY 3 cut(s) 258, 1145, 1669
ArsI GACNNNNNNTTYG 2 cut(s) 1495, 1527
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 4 cut(s) 546, 889, 910, 1431
AspLEI GCGC 2 cut(s) 217, 1176
AspS9I GGNCC 5 cut(s) 202, 726, 1011, 1906, 2417
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 5 cut(s) 286, 758, 1006, 1754, 2489
AvaII GGWCC 5 cut(s) 202, 726, 1011, 1906, 2417
BaeGI GKGCMC 4 cut(s) 1390, 1771, 1927, 2233
BamHI GGATCC 1 cut(s) 2596
BanI GGYRCC 1 cut(s) 2354
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 1 cut(s) 2337
Bbv12I GWGCWC 4 cut(s) 1390, 1771, 1885, 2233
BbvCI CCTCAGC 1 cut(s) 1818
BbvI GCAGC 7 cut(s) 175, 229, 303, 944, 1183, 1555, 1744
BciT130I CCWGG 4 cut(s) 199, 840, 1322, 1921
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 391, 2370
BcuI ACTAGT 1 cut(s) 1505
BfaI CTAG 6 cut(s) 1395, 1449, 1506, 1986, 2123, 2219
BfmI CTRYAG 2 cut(s) 2190, 2373
BfuAI ACCTGC 2 cut(s) 1928, 2423
BglII AGATCT 1 cut(s) 406
BisI GCNGC 7 cut(s) 189, 218, 292, 958, 1197, 1569, 1758
BlsI GCNGC 7 cut(s) 190, 219, 293, 959, 1198, 1570, 1759
Bme1390I CCNGG 5 cut(s) 199, 466, 840, 1322, 1921
Bme18I GGWCC 5 cut(s) 202, 726, 1011, 1906, 2417
BmgT120I GGNCC 5 cut(s) 202, 726, 1011, 1906, 2417
BmiI GGNNCC 8 cut(s) 203, 329, 834, 1054, 1526, 1861, 2356, 2598
BmrFI CCNGG 5 cut(s) 199, 466, 840, 1322, 1921
BmrI ACTGGG 1 cut(s) 2564
BmsI GCATC 5 cut(s) 597, 1219, 1787, 2032, 2560
BmuI ACTGGG 1 cut(s) 2564
BpiI GAAGAC 1 cut(s) 2337
BpmI CTGGAG 1 cut(s) 2163
Bpu10I CCTNAGC 1 cut(s) 1818
BpuEI CTTGAG 3 cut(s) 1511, 1595, 2351
BpuMI CCSGG 1 cut(s) 466
BsaAI YACGTR 1 cut(s) 1766
BsaBI GATNNNNATC 3 cut(s) 516, 1630, 1641
BsaHI GRCGYC 1 cut(s) 2510
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 8 cut(s) 198, 838, 839, 857, 1296, 1919, 1920, 2111
BsaXI ACNNNNNCTCC 2 cut(s) 1531, 1561
Bsc4I CCNNNNNNNGG 9 cut(s) 211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
Bse1I ACTGG 7 cut(s) 228, 933, 1861, 1938, 2095, 2244, 2559
Bse3DI GCAATG 2 cut(s) 1241, 2328
Bse8I GATNNNNATC 3 cut(s) 516, 1630, 1641
BseBI CCWGG 4 cut(s) 199, 840, 1322, 1921
BseDI CCNNGG 8 cut(s) 198, 838, 839, 857, 1296, 1919, 1920, 2111
BseGI GGATG 8 cut(s) 454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BseJI GATNNNNATC 3 cut(s) 516, 1630, 1641
BseLI CCNNNNNNNGG 9 cut(s) 211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
BseMI GCAATG 2 cut(s) 1241, 2328
BseMII CTCAG 6 cut(s) 288, 929, 1349, 1809, 2373, 2517
BseNI ACTGG 7 cut(s) 228, 933, 1861, 1938, 2095, 2244, 2559
BseRI GAGGAG 2 cut(s) 846, 2128
BseSI GKGCMC 4 cut(s) 1390, 1771, 1927, 2233
BseXI GCAGC 7 cut(s) 175, 229, 303, 944, 1183, 1555, 1744
BseYI CCCAGC 1 cut(s) 2407
BsgI GTGCAG 5 cut(s) 126, 441, 927, 1112, 1554
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 2354
BsiHKAI GWGCWC 4 cut(s) 1390, 1771, 1885, 2233
BsiSI CCGG 1 cut(s) 465
BslFI GGGAC 3 cut(s) 1347, 1698, 2293
BslI CCNNNNNNNGG 9 cut(s) 211, 858, 863, 991, 1327, 1397, 1937, 2461, 2531
BsmAI GTCTC 2 cut(s) 391, 2370
BsmFI GGGAC 3 cut(s) 1347, 1698, 2293
BsmI GAATGC 1 cut(s) 293
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 5 cut(s) 1390, 1771, 1885, 1927, 2233
Bsp19I CCATGG 1 cut(s) 1296
BspACI CCGC 7 cut(s) 186, 301, 1442, 1482, 1801, 2319, 2573
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 6 cut(s) 289, 928, 1350, 1810, 2372, 2518
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 8 cut(s) 203, 329, 834, 1054, 1526, 1861, 2356, 2598
BspMI ACCTGC 2 cut(s) 1928, 2423
BspPI GGATC 4 cut(s) 436, 1492, 2591, 2604
BspT107I GGYRCC 1 cut(s) 2354
BspTNI GGTCTC 1 cut(s) 391
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 2 cut(s) 1241, 2328
BsrI ACTGG 7 cut(s) 228, 933, 1861, 1938, 2095, 2244, 2559
BssECI CCNNGG 8 cut(s) 198, 838, 839, 857, 1296, 1919, 1920, 2111
BssNI GRCGYC 1 cut(s) 2510
BssT1I CCWWGG 1 cut(s) 1296
Bst2UI CCWGG 4 cut(s) 199, 840, 1322, 1921
Bst4CI ACNGT 7 cut(s) 683, 1000, 1315, 1600, 2010, 2377, 2446
Bst6I CTCTTC 1 cut(s) 1512
BstACI GRCGYC 1 cut(s) 2510
BstBAI YACGTR 1 cut(s) 1766
BstC8I GCNNGC 7 cut(s) 141, 1755, 1847, 1851, 2081, 2085, 2139
BstDEI CTNAG 8 cut(s) 17, 297, 915, 1358, 1818, 1900, 2359, 2526
BstDSI CCRYGG 1 cut(s) 1296
BstEII GGTNACC 1 cut(s) 764
BstF5I GGATG 8 cut(s) 454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 2 cut(s) 217, 1176
BstMAI GTCTC 2 cut(s) 391, 2370
BstMWI GCNNNNNNNGC 5 cut(s) 1343, 1577, 1586, 1766, 1775
BstNI CCWGG 4 cut(s) 199, 840, 1322, 1921
BstNSI RCATGY 4 cut(s) 238, 464, 1196, 1981
BstPI GGTNACC 1 cut(s) 764
BstSCI CCNGG 5 cut(s) 197, 464, 838, 1320, 1919
BstSFI CTRYAG 2 cut(s) 2190, 2373
BstSLI GKGCMC 4 cut(s) 1390, 1771, 1927, 2233
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 7 cut(s) 175, 229, 303, 944, 1183, 1555, 1744
BstV2I GAAGAC 1 cut(s) 2337
BstX2I RGATCY 4 cut(s) 406, 428, 1484, 2596
BstYI RGATCY 4 cut(s) 406, 428, 1484, 2596
BsuRI GGCC 1 cut(s) 22
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 8 cut(s) 454, 718, 1054, 1314, 1631, 1915, 2150, 2263
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 7 cut(s) 235, 944, 1152, 1227, 1596, 1931, 2367
BveI ACCTGC 2 cut(s) 1928, 2423
Cac8I GCNNGC 7 cut(s) 141, 1755, 1847, 1851, 2081, 2085, 2139
CaiI CAGNNNCTG 2 cut(s) 2381, 2606
CfoI GCGC 2 cut(s) 217, 1176
Cfr13I GGNCC 5 cut(s) 202, 726, 1011, 1906, 2417
CseI GACGC 1 cut(s) 2499
Csp6I GTAC 4 cut(s) 4, 982, 1981, 2246
CviQI GTAC 4 cut(s) 4, 982, 1981, 2246
DdeI CTNAG 8 cut(s) 17, 297, 915, 1358, 1818, 1900, 2359, 2526
DraI TTTAAA 1 cut(s) 1230
Eam1104I CTCTTC 1 cut(s) 1512
EarI CTCTTC 1 cut(s) 1512
EciI GGCGGA 1 cut(s) 1790
Eco130I CCWWGG 1 cut(s) 1296
Eco147I AGGCCT 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 391
Eco32I GATATC 2 cut(s) 1293, 1545
Eco47I GGWCC 5 cut(s) 202, 726, 1011, 1906, 2417
Eco57I CTGAAG 4 cut(s) 686, 1443, 1641, 2403
Eco91I GGTNACC 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 1906
EcoO65I GGTNACC 1 cut(s) 764
EcoRI GAATTC 1 cut(s) 1145
EcoRII CCWGG 4 cut(s) 197, 838, 1320, 1919
EcoRV GATATC 2 cut(s) 1293, 1545
EcoT14I CCWWGG 1 cut(s) 1296
ErhI CCWWGG 1 cut(s) 1296
FalI AAGNNNNNCTT 4 cut(s) 1253, 1285, 1416, 1448
FaqI GGGAC 3 cut(s) 1347, 1698, 2293
FauNDI CATATG 1 cut(s) 2548
FbaI TGATCA 1 cut(s) 517
FblI GTMKAC 3 cut(s) 105, 359, 1266
Fnu4HI GCNGC 7 cut(s) 189, 218, 292, 958, 1197, 1569, 1758
FokI GGATG 8 cut(s) 461, 725, 1061, 1321, 1638, 1902, 2137, 2270
Fsp4HI GCNGC 7 cut(s) 189, 218, 292, 958, 1197, 1569, 1758
FspBI CTAG 6 cut(s) 1395, 1449, 1506, 1986, 2123, 2219
FspI TGCGCA 1 cut(s) 1175
GlaI GCGC 2 cut(s) 216, 1175
GluI GCNGC 7 cut(s) 189, 218, 292, 958, 1197, 1569, 1758
GsaI CCCAGC 1 cut(s) 2411
GsuI CTGGAG 1 cut(s) 2163
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 465
HgaI GACGC 1 cut(s) 2499
HhaI GCGC 2 cut(s) 217, 1176
Hin1I GRCGYC 1 cut(s) 2510
Hin6I GCGC 2 cut(s) 215, 1174
HinP1I GCGC 2 cut(s) 215, 1174
HincII GTYRAC 1 cut(s) 1181
HindII GTYRAC 1 cut(s) 1181
HpaII CCGG 1 cut(s) 465
HphI GGTGA 5 cut(s) 286, 758, 1006, 1754, 2489
Hpy166II GTNNAC 7 cut(s) 106, 360, 1181, 1267, 1388, 1769, 2231
Hpy8I GTNNAC 7 cut(s) 106, 360, 1181, 1267, 1388, 1769, 2231
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 8 cut(s) 91, 248, 373, 892, 1401, 1425, 1616, 2524
HpyCH4III ACNGT 7 cut(s) 683, 1000, 1315, 1600, 2010, 2377, 2446
HpyCH4IV ACGT 1 cut(s) 1765
HpyF10VI GCNNNNNNNGC 5 cut(s) 1343, 1577, 1586, 1766, 1775
HpyF3I CTNAG 8 cut(s) 17, 297, 915, 1358, 1818, 1900, 2359, 2526
HpySE526I ACGT 1 cut(s) 1765
Hsp92I GRCGYC 1 cut(s) 2510
HspAI GCGC 2 cut(s) 215, 1174
Ksp22I TGATCA 1 cut(s) 517
LmnI GCTCC 3 cut(s) 88, 1472, 1971
Lsp1109I GCAGC 7 cut(s) 175, 229, 303, 944, 1183, 1555, 1744
LweI GCATC 5 cut(s) 597, 1219, 1787, 2032, 2560
MaeI CTAG 6 cut(s) 1395, 1449, 1506, 1986, 2123, 2219
MaeII ACGT 1 cut(s) 1765
MbiI CCGCTC 1 cut(s) 301
MfeI CAATTG 1 cut(s) 551
MflI RGATCY 4 cut(s) 406, 428, 1484, 2596
MhlI GDGCHC 5 cut(s) 1390, 1771, 1885, 1927, 2233
MlyI GAGTC 3 cut(s) 88, 1369, 2280
MmeI TCCRAC 1 cut(s) 66
MroXI GAANNNNTTC 4 cut(s) 546, 889, 910, 1431
MseI TTAA 4 cut(s) 731, 759, 1229, 1271
MslI CAYNNNNRTG 3 cut(s) 771, 1134, 1280
MspA1I CMGCKG 2 cut(s) 188, 1717
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 5 cut(s) 199, 466, 840, 1322, 1921
MunI CAATTG 1 cut(s) 551
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 4 cut(s) 199, 840, 1322, 1921
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 5 cut(s) 1343, 1577, 1586, 1766, 1775
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 1296
NdeI CATATG 1 cut(s) 2548
NlaIV GGNNCC 8 cut(s) 203, 329, 834, 1054, 1526, 1861, 2356, 2598
NsbI TGCGCA 1 cut(s) 1175
NspI RCATGY 4 cut(s) 238, 464, 1196, 1981
PasI CCCWGGG 2 cut(s) 839, 1920
PceI AGGCCT 1 cut(s) 22
PciI ACATGT 1 cut(s) 1977
PctI GAATGC 1 cut(s) 293
PdmI GAANNNNTTC 4 cut(s) 546, 889, 910, 1431
PflFI GACNNNGTC 1 cut(s) 928
PflMI CCANNNNNTGG 1 cut(s) 2461
PkrI GCNGC 7 cut(s) 190, 219, 293, 959, 1198, 1570, 1759
PleI GAGTC 3 cut(s) 87, 1368, 2279
PpsI GAGTC 3 cut(s) 87, 1368, 2279
Ppu21I YACGTR 1 cut(s) 1766
PpuMI RGGWCCY 1 cut(s) 1906
PscI ACATGT 1 cut(s) 1977
PshBI ATTAAT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 1906
Psp6I CCWGG 4 cut(s) 197, 838, 1320, 1919
PspEI GGTNACC 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 2407
PspGI CCWGG 4 cut(s) 197, 838, 1320, 1919
PspN4I GGNNCC 8 cut(s) 203, 329, 834, 1054, 1526, 1861, 2356, 2598
PspPI GGNCC 5 cut(s) 202, 726, 1011, 1906, 2417
PspPPI RGGWCCY 1 cut(s) 1906
PsrI GAACNNNNNNTAC 2 cut(s) 2229, 2261
PstNI CAGNNNCTG 2 cut(s) 2381, 2606
PsuI RGATCY 4 cut(s) 406, 428, 1484, 2596
PsyI GACNNNGTC 1 cut(s) 928
PvuII CAGCTG 1 cut(s) 1717
RsaI GTAC 4 cut(s) 5, 983, 1982, 2247
RsaNI GTAC 4 cut(s) 4, 982, 1981, 2246
RseI CAYNNNNRTG 3 cut(s) 771, 1134, 1280
SaqAI TTAA 4 cut(s) 731, 759, 1229, 1271
SatI GCNGC 7 cut(s) 189, 218, 292, 958, 1197, 1569, 1758
Sau96I GGNCC 5 cut(s) 202, 726, 1011, 1906, 2417
SchI GAGTC 3 cut(s) 88, 1369, 2280
ScrFI CCNGG 5 cut(s) 199, 466, 840, 1322, 1921
SduI GDGCHC 5 cut(s) 1390, 1771, 1885, 1927, 2233
SfaNI GCATC 5 cut(s) 597, 1219, 1787, 2032, 2560
SfcI CTRYAG 2 cut(s) 2190, 2373
SinI GGWCC 5 cut(s) 202, 726, 1011, 1906, 2417
SmiMI CAYNNNNRTG 3 cut(s) 771, 1134, 1280
SmlI CTYRAG 3 cut(s) 1490, 1574, 2330
SmoI CTYRAG 3 cut(s) 1490, 1574, 2330
SpeI ACTAGT 1 cut(s) 1505
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 7 cut(s) 186, 301, 1442, 1482, 1801, 2319, 2573
SspMI CTAG 6 cut(s) 1395, 1449, 1506, 1986, 2123, 2219
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 5 cut(s) 197, 464, 838, 1320, 1919
StyI CCWWGG 1 cut(s) 1296
TaaI ACNGT 7 cut(s) 683, 1000, 1315, 1600, 2010, 2377, 2446
TaiI ACGT 1 cut(s) 1768
TaqI TCGA 3 cut(s) 95, 398, 2368
TaqII GACCGA 1 cut(s) 999
TatI WGTACW 1 cut(s) 1980
Tru1I TTAA 4 cut(s) 731, 759, 1229, 1271
Tru9I TTAA 4 cut(s) 731, 759, 1229, 1271
TscAI CASTG 7 cut(s) 235, 951, 1159, 1227, 1603, 1938, 2367
TseI GCWGC 7 cut(s) 188, 217, 291, 957, 1196, 1568, 1757
TspGWI ACGGA 3 cut(s) 72, 194, 1826
TspRI CASTG 7 cut(s) 235, 951, 1159, 1227, 1603, 1938, 2367
Tth111I GACNNNGTC 1 cut(s) 928
Van91I CCANNNNNTGG 1 cut(s) 2461
VneI GTGCAC 3 cut(s) 1386, 1767, 2229
VpaK11BI GGWCC 5 cut(s) 202, 726, 1011, 1906, 2417
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 3 cut(s) 258, 1145, 1669
XceI RCATGY 4 cut(s) 238, 464, 1196, 1981
XcmI CCANNNNNNNNNTGG 2 cut(s) 246, 2257
XmiI GTMKAC 3 cut(s) 105, 359, 1266
XmnI GAANNNNTTC 4 cut(s) 546, 889, 910, 1431
XspI CTAG 6 cut(s) 1395, 1449, 1506, 1986, 2123, 2219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.