Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005400

Physical Location & Seq

Genomic Coordinates Reverse (-)

20700880 .. 20703091

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGATGGCGCCTCTTCCTCTGGTGAAACATCATCAACTGTCACCTCTATGCTCCAAGTCTTCCCACACCCTCATCCTCAAAAACTGGCAGCTGGGTTCCTCCTTTTTCAGCGGAAGAACTTTCCAAATGCCCCAAACATCGAGAACGGTGATCCGAAGAAGACGAAGAATGCAAGCAGTGGCTTCGTTGGGAGGTTTATTTGGTTGGATTTTCGAGGGAAGCGACACTGGTGAGTCCACCAGGAAGCTTGGAAGCTCAGATGTCTACTCTCTCCGATTCGGAGCTGAGGGAGAAGACGCGCCTCTTTCAAGAACGCGCCAAGCAGGGAGAGTCTTTGGATTCCCTTTTACCTGTGGCAATGTTCTTCATAAGGGGGAAATAGCTGAAATGAGAACTGGAGAAGGAAAAACCCTTGTTGCTATCTTACCAACATATTTGAATGCATTAATTGGAAAAGGAGTTCATGTTGTTACTGTCAATGATTATCTGGCCGGGCGGGATTGTGAGTGGGTTGGCCAGGTTCCTCGTTTCCTTGGATTGAAGGTTGGCCTAATCCAACAGAATATGACAAGCGAGCAAAGAAGGGAGAATTACTTATGTGACATCACATATGTTACCAACACTGAGCTTGGTTTTGATTACTTGAGAGATAATCTGAGTGTGGAGGGGCTTGTCTTGAGGAATTTCAATTACTGTGTAATTGATGAGGTTGATTCCATCCTTATTGATGAAGCAAGGACACCTCTCATTATATCTGGACCTGTGGATGAAAAGATGAAAACAGTTCTGCTCACAGAACAGGGTTATGAAGATTCAGAAGAGATTCTTGGTGTAAAAGATCTATATGATCCGTATAGATCCGTGAGAACAGTGGGCATCTTATGTTCTGAATGCAATAAAAGCGAAAGAACTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

308

Amino Acids

34.3

Weight (kDa)

6.54

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_DEAD	PF07517	117 - 263	4.4e-71	SecA DEAD-like domain
DEAD	PF00270	128 - 244	2.6e-07	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01800 AT4G01800 AT4G01800
fragaria_vesca	FvH4_1g26240
malus_domestica	MD17G1285000.v1.1
prunus_persica	Prupe.3G002700_v2.0.a1
pyrus_communis	pycom09g19850 pycom17g28080 pycom17g28090
rosa_chinensis	RchiOBHm_Chr3g0485781
rosa_laevigata	RLG00000023125
rosa_multiflora	Rmu_co8471925.1_g000001 Rmu_sc0012870.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123840
rosa_rugosa	Rorug03G0221400
rosa_samantha	Rh1AG180100 Rh1CG167100 Rh3AG270700 Rh3BG306200 Rh3BG306300 Rh3CG304600 Rh3DG300700 Rh4AG241300 Rh4AG241400 Rh4BG244600 Rh4BG244700 Rh4CG255400 Rh7CG119700
rosa_wichuraiana	Rw3G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	302, 319
AciI	CCGC	2 cut(s)	114, 499
AclWI	GGATC	3 cut(s)	148, 845, 855
AcoI	YGGCCR	2 cut(s)	492, 517
AcsI	RAATTY	1 cut(s)	685
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	312, 442, 544, 691
AjnI	CCWGG	2 cut(s)	242, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	813, 845
AloI	GAACNNNNNNTCC	2 cut(s)	447, 479
AluBI	AGCT	6 cut(s)	94, 250, 258, 287, 386, 631
AluI	AGCT	6 cut(s)	94, 250, 258, 287, 386, 631
AlwI	GGATC	3 cut(s)	148, 845, 855
AoxI	GGCC	3 cut(s)	492, 517, 550
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	685
AseI	ATTAAT	1 cut(s)	449
Asp700I	GAANNNNTTC	2 cut(s)	825, 916
AspLEI	GCGC	3 cut(s)	13, 304, 321
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	4 cut(s)	36, 37, 163, 245
AvaII	GGWCC	1 cut(s)	761
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	3 cut(s)	54, 169, 303
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	728
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	2 cut(s)	244, 521
BcnI	CCSGG	1 cut(s)	496
BfoI	RGCGCY	1 cut(s)	14
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	3 cut(s)	244, 496, 521
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	3 cut(s)	12, 100, 525
BmrFI	CCNGG	3 cut(s)	244, 496, 521
BmsI	GCATC	1 cut(s)	888
BpiI	GAAGAC	3 cut(s)	54, 169, 303
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	667, 700
BpuMI	CCSGG	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse1I	ACTGG	3 cut(s)	92, 235, 403
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	244, 521
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	3 cut(s)	75, 720, 775
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	4 cut(s)	273, 279, 618, 650
BseNI	ACTGG	3 cut(s)	92, 235, 403
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	2 cut(s)	302, 319
BshFI	GGCC	3 cut(s)	494, 519, 552
BshNI	GGYRCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	495
BsmI	GAATGC	3 cut(s)	177, 448, 899
BsnI	GGCC	3 cut(s)	494, 519, 552
Bsp143I	GATC	4 cut(s)	153, 841, 850, 860
BspACI	CCGC	2 cut(s)	114, 499
BspANI	GGCC	3 cut(s)	494, 519, 552
BspCNI	CTCAG	4 cut(s)	272, 280, 619, 651
BspFNI	CGCG	2 cut(s)	302, 319
BspLI	GGNNCC	3 cut(s)	12, 100, 525
BspPI	GGATC	3 cut(s)	148, 845, 855
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	92, 235, 403
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	4 cut(s)	153, 841, 850, 860
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	244, 521
Bst4CI	ACNGT	6 cut(s)	42, 151, 478, 698, 787, 874
Bst6I	CTCTTC	2 cut(s)	21, 816
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	177, 578
BstDEI	CTNAG	5 cut(s)	259, 288, 627, 659, 921
BstF5I	GGATG	3 cut(s)	75, 720, 775
BstFNI	CGCG	2 cut(s)	302, 319
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	3 cut(s)	13, 304, 321
BstKTI	GATC	4 cut(s)	156, 844, 853, 863
BstMBI	GATC	4 cut(s)	153, 841, 850, 860
BstMWI	GCNNNNNNNGC	1 cut(s)	903
BstNI	CCWGG	2 cut(s)	244, 521
BstSCI	CCNGG	3 cut(s)	242, 494, 519
BstUI	CGCG	2 cut(s)	302, 319
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	3 cut(s)	54, 169, 303
BstX2I	RGATCY	2 cut(s)	841, 860
BstYI	RGATCY	2 cut(s)	841, 860
BsuRI	GGCC	3 cut(s)	494, 519, 552
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	75, 720, 775
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	4 cut(s)	186, 228, 624, 879
Cac8I	GCNNGC	2 cut(s)	177, 578
CfoI	GCGC	3 cut(s)	13, 304, 321
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	1 cut(s)	308
CviAII	CATG	1 cut(s)	467
DdeI	CTNAG	5 cut(s)	259, 288, 627, 659, 921
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	4 cut(s)	155, 843, 852, 862
DpnII	GATC	4 cut(s)	153, 841, 850, 860
EaeI	YGGCCR	2 cut(s)	492, 517
Eam1104I	CTCTTC	2 cut(s)	21, 816
EarI	CTCTTC	2 cut(s)	21, 816
Eco130I	CCWWGG	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	242, 519
EcoT14I	CCWWGG	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	1 cut(s)	470
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	1 cut(s)	466
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	3 cut(s)	62, 707, 782
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	3 cut(s)	12, 303, 320
GluI	GCNGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	494, 519, 552
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	3 cut(s)	13, 304, 321
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	470
Hin6I	GCGC	3 cut(s)	11, 302, 319
HinP1I	GCGC	3 cut(s)	11, 302, 319
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	7 cut(s)	236, 279, 333, 342, 716, 815, 826
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	4 cut(s)	36, 37, 163, 245
Hpy166II	GTNNAC	2 cut(s)	240, 268
Hpy188I	TCNGA	7 cut(s)	158, 262, 278, 284, 660, 820, 892
Hpy188III	TCNNGA	4 cut(s)	144, 312, 679, 759
Hpy8I	GTNNAC	2 cut(s)	240, 268
HpyAV	CCTTC	3 cut(s)	398, 538, 579
HpyCH4III	ACNGT	6 cut(s)	42, 151, 478, 698, 787, 874
HpyCH4V	TGCA	3 cut(s)	175, 446, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	903
HpyF3I	CTNAG	5 cut(s)	259, 288, 627, 659, 921
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	470
HspAI	GCGC	3 cut(s)	11, 302, 319
KasI	GGCGCC	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	153, 841, 850, 860
LmnI	GCTCC	2 cut(s)	59, 284
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	888
MaeIII	GTNAC	4 cut(s)	42, 472, 602, 616
MalI	GATC	4 cut(s)	155, 843, 852, 862
MboI	GATC	4 cut(s)	153, 841, 850, 860
MflI	RGATCY	2 cut(s)	841, 860
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	5 cut(s)	450, 592, 685, 691, 702
MluNI	TGGCCA	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	245, 342
MmeI	TCCRAC	2 cut(s)	188, 583
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	825, 916
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	94, 114
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	244, 496, 521
Mva1269I	GAATGC	3 cut(s)	177, 448, 899
MvaI	CCWGG	2 cut(s)	244, 521
MvnI	CGCG	2 cut(s)	302, 319
MwoI	GCNNNNNNNGC	1 cut(s)	903
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	496
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	4 cut(s)	153, 841, 850, 860
NlaIII	CATG	1 cut(s)	470
NlaIV	GGNNCC	3 cut(s)	12, 100, 525
NmuCI	GTSAC	2 cut(s)	42, 602
NsiI	ATGCAT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	3 cut(s)	177, 448, 899
PdmI	GAANNNNTTC	2 cut(s)	825, 916
PfeI	GAWTC	5 cut(s)	279, 342, 716, 815, 826
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	2 cut(s)	244, 341
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	244, 341
PshBI	ATTAAT	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	242, 519
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	2 cut(s)	242, 519
PspN4I	GGNNCC	3 cut(s)	12, 100, 525
PspPI	GGNCC	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	841, 860
PvuII	CAGCTG	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	4 cut(s)	153, 841, 850, 860
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	2 cut(s)	245, 342
ScrFI	CCNGG	3 cut(s)	244, 496, 521
SfaNI	GCATC	1 cut(s)	888
SfoI	GGCGCC	1 cut(s)	12
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	646, 679
SmoI	CTYRAG	2 cut(s)	646, 679
Sse9I	AATT	5 cut(s)	450, 592, 685, 691, 702
SsiI	CCGC	2 cut(s)	114, 499
SspDI	GGCGCC	1 cut(s)	10
StyD4I	CCNGG	3 cut(s)	242, 494, 519
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	6 cut(s)	42, 151, 478, 698, 787, 874
TaqI	TCGA	2 cut(s)	143, 216
TasI	AATT	5 cut(s)	450, 592, 685, 691, 702
TfiI	GAWTC	5 cut(s)	279, 342, 716, 815, 826
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	4 cut(s)	186, 235, 631, 879
TseFI	GTSAC	2 cut(s)	42, 602
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	42, 602
TspDTI	ATGAA	6 cut(s)	359, 455, 747, 786, 794, 825
TspGWI	ACGGA	2 cut(s)	843, 853
TspRI	CASTG	4 cut(s)	186, 235, 631, 879
VpaK11BI	GGWCC	1 cut(s)	761
VspI	ATTAAT	1 cut(s)	449
XapI	RAATTY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	2 cut(s)	825, 916
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.