Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471925.1

Orthogroup ID

OG0005400

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1931

Gene Structure 1930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471925.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgtctaagctttccgattccgagctcagggagaagactctgcagtttcaacaacgcgccaagcagggcgagtccttggactctcttttacccgaagcatttgctgtgatcagagaggcttcgaggagggttttaggccttcgtccctttgacgtccaactcataggcggcatagttcttcacaagggggaaatagctgaaatgaggactggagaaggaaagacccttgttgctattttaccagcatatttgaatgcattaactggaaagggagttcatgttgtcaccgtcaatgattatctggcccgacgtgattgtgagtgggttggtcaagttcctcgtttccttggattgaaggttggcctaatccaacaaaatatgacaagtgaacaaagaagggagaactacttatgtgacgtcacatatgtcacaaacagcgagcttggttttgatttcctgagagataatctggccacggaaagtaattcttgctatattttcttaactaatagtgttgaggagcttgtcttgaggaatttcaattactgtgtaattgatgaggttgattccatccttattgatgaagcaagaacacctctcattatatctggacctgcagaaaaacctagtgataggtattataaagctgcaaagatggcttcagtgtttgagcgagatatacattatactgtggatgaaaagcagaaaacagttctgctttcagaacaaggatatgaagatgctgaagagattctaggtgtcaaagatttatatgatccccgcgaacagtgggcatcttatgttctgaatgccgtgaaagctaaagaactgtttcttagagatgtaaattatataattcgtggcaaagaggttcttatcgttgatgagtttacaggacgagttatgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

303

Amino Acids

34.49

Weight (kDa)

5.05

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01800 AT4G01800 AT4G01800
fragaria_vesca	FvH4_1g26240
malus_domestica	MD17G1285000.v1.1
prunus_persica	Prupe.3G002700_v2.0.a1
pyrus_communis	pycom09g19850 pycom17g28080 pycom17g28090
rosa_chinensis	RchiOBHm_Chr3g0485781
rosa_laevigata	RLG00000023125
rosa_multiflora	Rmu_co8471925.1_g000001 Rmu_sc0012870.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123840
rosa_rugosa	Rorug03G0221400
rosa_samantha	Rh1AG180100 Rh1CG167100 Rh3AG270700 Rh3BG306200 Rh3BG306300 Rh3CG304600 Rh3DG300700 Rh4AG241300 Rh4AG241400 Rh4BG244600 Rh4BG244700 Rh4CG255400 Rh7CG119700
rosa_wichuraiana	Rw3G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AatII	GACGTC	2 cut(s)	156, 420
Acc36I	ACCTGC	1 cut(s)	622
AccII	CGCG	2 cut(s)	57, 783
AciI	CCGC	2 cut(s)	168, 781
AclWI	GGATC	1 cut(s)	770
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	2 cut(s)	645, 765
AcyI	GRCGYC	2 cut(s)	153, 417
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	50, 253, 355, 541
AjiI	CACGTC	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	7 cut(s)	10, 25, 197, 442, 523, 647, 821
AluI	AGCT	7 cut(s)	10, 25, 197, 442, 523, 647, 821
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	4 cut(s)	136, 303, 361, 471
ApeKI	GCWGC	1 cut(s)	647
ApoI	RAATTY	1 cut(s)	535
Asp700I	GAANNNNTTC	2 cut(s)	750, 831
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	304, 611
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	2 cut(s)	578, 649
BceAI	ACGGC	1 cut(s)	797
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BclI	TGATCA	1 cut(s)	108
BfaI	CTAG	2 cut(s)	627, 755
BfmI	CTRYAG	2 cut(s)	41, 615
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	169, 648
BlsI	GCNGC	2 cut(s)	170, 649
Bme18I	GGWCC	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	304, 611
BmsI	GCATC	2 cut(s)	730, 803
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	153, 417
BsaJI	CCNNGG	3 cut(s)	75, 346, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	214, 268
BseDI	CCNNGG	3 cut(s)	75, 346, 474
BseGI	GGATG	2 cut(s)	570, 700
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	40, 449
BseNI	ACTGG	2 cut(s)	214, 268
BseRI	GAGGAG	2 cut(s)	139, 533
BseXI	GCAGC	1 cut(s)	634
Bsh1236I	CGCG	2 cut(s)	57, 783
BshFI	GGCC	4 cut(s)	138, 305, 363, 473
BsiHKAI	GWGCWC	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	2 cut(s)	259, 814
BsnI	GGCC	4 cut(s)	138, 305, 363, 473
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	108, 775
BspACI	CCGC	2 cut(s)	168, 781
BspANI	GGCC	4 cut(s)	138, 305, 363, 473
BspCNI	CTCAG	2 cut(s)	39, 450
BspFNI	CGCG	2 cut(s)	57, 783
BspMAI	CTGCAG	2 cut(s)	45, 619
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	214, 268
BssECI	CCNNGG	3 cut(s)	75, 346, 474
BssMI	GATC	2 cut(s)	108, 775
BssNI	GRCGYC	2 cut(s)	153, 417
BssT1I	CCWWGG	2 cut(s)	75, 346
Bst4CI	ACNGT	6 cut(s)	289, 548, 691, 712, 789, 831
Bst6I	CTCTTC	1 cut(s)	741
BstACI	GRCGYC	2 cut(s)	153, 417
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	4 cut(s)	6, 26, 458, 836
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	570, 700
BstFNI	CGCG	2 cut(s)	57, 783
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	111, 778
BstMBI	GATC	2 cut(s)	108, 775
BstMWI	GCNNNNNNNGC	2 cut(s)	656, 818
BstSFI	CTRYAG	2 cut(s)	41, 615
BstUI	CGCG	2 cut(s)	57, 783
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	41
BsuRI	GGCC	4 cut(s)	138, 305, 363, 473
BtgI	CCRYGG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	2 cut(s)	570, 700
BtsIMutI	CAGTG	2 cut(s)	669, 794
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	304, 611
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	6, 26, 458, 836
DpnI	GATC	2 cut(s)	110, 777
DpnII	GATC	2 cut(s)	108, 775
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Ecl136II	GAGCTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	75, 346
Eco147I	AGGCCT	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	645, 765
EcoICRI	GAGCTC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	75, 346
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	75, 346
FaeI	CATG	1 cut(s)	281
FalI	AAGNNNNNCTT	4 cut(s)	472, 504, 858, 890
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	788
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	169, 648
FokI	GGATG	2 cut(s)	557, 707
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	169, 648
FspBI	CTAG	2 cut(s)	627, 755
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	169, 648
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	4 cut(s)	138, 305, 363, 473
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	153, 417
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	6 cut(s)	17, 37, 71, 80, 566, 751
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	389, 891
Hpy188I	TCNGA	5 cut(s)	16, 22, 113, 724, 807
Hpy188III	TCNNGA	3 cut(s)	457, 529, 609
Hpy8I	GTNNAC	2 cut(s)	389, 891
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	4 cut(s)	149, 209, 349, 390
HpyCH4III	ACNGT	6 cut(s)	289, 548, 691, 712, 789, 831
HpyCH4IV	ACGT	3 cut(s)	153, 310, 417
HpyCH4V	TGCA	5 cut(s)	43, 257, 617, 650, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	656, 818
HpyF3I	CTNAG	4 cut(s)	6, 26, 458, 836
HpySE526I	ACGT	3 cut(s)	153, 310, 417
Hsp92I	GRCGYC	2 cut(s)	153, 417
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 775
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	730, 803
MaeI	CTAG	2 cut(s)	627, 755
MaeII	ACGT	3 cut(s)	153, 310, 417
MaeIII	GTNAC	4 cut(s)	283, 413, 418, 427
MalI	GATC	2 cut(s)	110, 777
MboI	GATC	2 cut(s)	108, 775
MboII	GAAGA	4 cut(s)	46, 170, 749, 758
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	6 cut(s)	484, 535, 541, 552, 847, 855
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	31, 74, 80
MmeI	TCCRAC	2 cut(s)	181, 394
Mox20I	TGGCCA	1 cut(s)	473
Mph1103I	ATGCAT	1 cut(s)	259
MroXI	GAANNNNTTC	2 cut(s)	750, 831
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	260, 503
Msp20I	TGGCCA	1 cut(s)	473
Mva1269I	GAATGC	2 cut(s)	259, 814
MvnI	CGCG	2 cut(s)	57, 783
MwoI	GCNNNNNNNGC	2 cut(s)	656, 818
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	108, 775
NlaIII	CATG	1 cut(s)	281
NmuCI	GTSAC	4 cut(s)	283, 413, 418, 427
NsiI	ATGCAT	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	138
PctI	GAATGC	2 cut(s)	259, 814
PdmI	GAANNNNTTC	2 cut(s)	750, 831
PfeI	GAWTC	3 cut(s)	17, 566, 751
PkrI	GCNGC	2 cut(s)	170, 649
PleI	GAGTC	3 cut(s)	31, 74, 79
PpsI	GAGTC	3 cut(s)	31, 74, 79
PsiI	TTATAA	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	304, 611
PstI	CTGCAG	2 cut(s)	45, 619
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	260, 503
SatI	GCNGC	2 cut(s)	169, 648
Sau3AI	GATC	2 cut(s)	108, 775
Sau96I	GGNCC	2 cut(s)	304, 611
SchI	GAGTC	3 cut(s)	31, 74, 80
SduI	GDGCHC	1 cut(s)	27
SfaNI	GCATC	2 cut(s)	730, 803
SfcI	CTRYAG	2 cut(s)	41, 615
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	6 cut(s)	484, 535, 541, 552, 847, 855
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	2 cut(s)	168, 781
SspMI	CTAG	2 cut(s)	627, 755
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	75, 346
TaaI	ACNGT	6 cut(s)	289, 548, 691, 712, 789, 831
TaiI	ACGT	3 cut(s)	156, 313, 420
TaqI	TCGA	1 cut(s)	122
TasI	AATT	6 cut(s)	484, 535, 541, 552, 847, 855
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	3 cut(s)	17, 566, 751
Tru1I	TTAA	2 cut(s)	260, 503
Tru9I	TTAA	2 cut(s)	260, 503
TscAI	CASTG	2 cut(s)	669, 794
TseFI	GTSAC	4 cut(s)	283, 413, 418, 427
TseI	GCWGC	1 cut(s)	647
Tsp45I	GTSAC	4 cut(s)	283, 413, 418, 427
TspDTI	ATGAA	4 cut(s)	266, 597, 711, 750
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	669, 794
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	535
XmnI	GAANNNNTTC	2 cut(s)	750, 831
XspI	CTAG	2 cut(s)	627, 755
ZraI	GACGTC	2 cut(s)	154, 418
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.