pycom17g28080

Protein translocase subunit SecA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
26131781 .. 26133963
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g28080.1

Sequence Viewer

Length: 1095 bp
ATGGCGGTGGCGCCTCTTCCTCTGGTGAAACATCATCAACTGTCACCTCTGTGCTCCAAGTTTTCCCACCCCCTCAACCTCAAAAACCGGCAGCTGTGTTCCTCCTTTTTCGGCGGAAGAACCTTCCAAATGCCCGAAACATCGAGAATGGTGTGCCGAAGAAGACGAAGAATGCAAGCAGTGGCTTCGTTGGGAGGTTTATTAGGTGGGATTTTCAAAGGAAGCGACACTGGTGAGTCCACCAGGCAGCAGTATGCTCCCACCGTGTCTGTAATCAATGGCTTGGAAGCTCAGATGTCTGCGCTCTCCGATTCGGAGCTGAGGGAGAAGACGCGCCTCTTTCAAGAACGCGCCAAGCAGGGAGAGTCTTTGGATTCCCTTTTACCTGAAGCATTTGCCGTCGTAAGGGAGGCTTCGAAGAGGGTTTTAGGCCTTCGTCCCTTTGATGTCCAACTCATAGGTGGCATGGTTCTTCATAAAGGGGAAATAGCTGAAATGAGAACTGGAGAAGGAAAAACCCTTGTTGCTATCTTACCAGCATATTTAAATGCATTAATTGGCAAAGGAGTTCATGTTGTTACTGTCAACGATTATCTGGCACGGCGGGATTGTGAGTGGGTTGGCCAGGTTCCTCGTTTCCTTGGATTGAAGGTTGGCCTAATCCAACAGAATATGACAAGTGAGCAAAGAAGGGAGAATTACTTATGCGACATCACATATGTTACCAACAGTGAGCTTGGTTTTGATTACTTGAGAGATAATCTGAGTGTTGAGGAGCTTGTCTTGAGGAATTTCAATTACTGTGTAATTGACGAGGTTGATTCCATCCTTATAGATGAAGCAAGGACACCTCTCATTATTTCTGGACCTGCAGAAAAACCTAGCGATCGGTATTATAAAGCTGCAAAGATAGCTGCAGTATTTGAGCGTGAAATACATTACACTGTGGATGAAAAGATGAAAACAGTTCTGCTCACAGAACAGGGTTATGAAGATTCGGAAGAGATTCTGGGTGTAAAAGATCTATATCGATCCCCGAGAACAGTGGGCATCTTATGTTCTGAATGCAATAAAAGCGAAAGAACTCTTTCTTAG

Protein Analysis

365

Amino Acids

40.84

Weight (kDa)

7.56

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecA_DEAD PF07517 79 - 313 7e-103 SecA DEAD-like domain
DEAD PF00270 163 - 278 2.5e-08 DEAD/DEAH box helicase
SecA_PP_bind PF01043 295 - 346 3.6e-08 SecA preprotein cross-linking domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 10
AccII CGCG 2 cut(s) 334, 351
AciI CCGC 3 cut(s) 5, 114, 604
AclWI GGATC 1 cut(s) 1026
AcoI YGGCCR 1 cut(s) 622
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 405
AgsI TTSAA 4 cut(s) 217, 344, 649, 796
AjnI CCWGG 2 cut(s) 242, 624
AleI CACNNNNGTG 1 cut(s) 49
AluBI AGCT 8 cut(s) 94, 290, 319, 491, 736, 778, 902, 914
AluI AGCT 8 cut(s) 94, 290, 319, 491, 736, 778, 902, 914
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 1026
Ama87I CYCGRG 1 cut(s) 1036
AoxI GGCC 3 cut(s) 430, 622, 655
ApeKI GCWGC 4 cut(s) 91, 247, 902, 914
ApoI RAATTY 1 cut(s) 790
AseI ATTAAT 1 cut(s) 554
Asp700I GAANNNNTTC 2 cut(s) 1005, 1087
AspLEI GCGC 4 cut(s) 13, 304, 336, 353
AspS9I GGNCC 1 cut(s) 866
AsuHPI GGTGA 3 cut(s) 36, 37, 245
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 866
BalI TGGCCA 1 cut(s) 624
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 2 cut(s) 169, 335
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 103, 259, 889, 901
BccI CCATC 1 cut(s) 833
BceAI ACGGC 2 cut(s) 383, 617
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 2 cut(s) 244, 626
BfaI CTAG 1 cut(s) 882
BfmI CTRYAG 2 cut(s) 870, 915
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 877
BglII AGATCT 1 cut(s) 1021
BisI GCNGC 4 cut(s) 92, 248, 903, 915
BlsI GCNGC 4 cut(s) 93, 249, 904, 916
Bme1390I CCNGG 2 cut(s) 244, 626
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 866
BmiI GGNNCC 2 cut(s) 12, 630
BmrFI CCNGG 2 cut(s) 244, 626
BmsI GCATC 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 169, 335
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 772, 805
Bsa29I ATCGAT 1 cut(s) 1030
BsaBI GATNNNNATC 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 2 cut(s) 235, 508
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 244, 626
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 1 cut(s) 640
BseGI GGATG 2 cut(s) 825, 955
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 3 cut(s) 305, 311, 755
BseNI ACTGG 2 cut(s) 235, 508
BseRI GAGGAG 1 cut(s) 788
BseXI GCAGC 4 cut(s) 103, 259, 889, 901
Bsh1236I CGCG 2 cut(s) 334, 351
Bsh1285I CGRYCG 1 cut(s) 889
BshFI GGCC 3 cut(s) 432, 624, 657
BshNI GGYRCC 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 1030
BsiEI CGRYCG 1 cut(s) 889
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 1036
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 177, 1070
BsnI GGCC 3 cut(s) 432, 624, 657
BsoBI CYCGRG 1 cut(s) 1036
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 886, 1021, 1031
BspACI CCGC 3 cut(s) 5, 114, 604
BspANI GGCC 3 cut(s) 432, 624, 657
BspCNI CTCAG 3 cut(s) 304, 312, 756
BspDI ATCGAT 1 cut(s) 1030
BspFNI CGCG 2 cut(s) 334, 351
BspLI GGNNCC 2 cut(s) 12, 630
BspMAI CTGCAG 2 cut(s) 874, 919
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 1 cut(s) 1026
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 2 cut(s) 235, 508
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 640
BssMI GATC 3 cut(s) 886, 1021, 1031
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 244, 626
Bst4CI ACNGT 8 cut(s) 42, 265, 583, 731, 803, 946, 967, 1045
Bst6I CTCTTC 3 cut(s) 21, 413, 996
BstACI GRCGYC 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 4 cut(s) 291, 320, 764, 1092
BstF5I GGATG 2 cut(s) 825, 955
BstFNI CGCG 2 cut(s) 334, 351
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 4 cut(s) 13, 304, 336, 353
BstKTI GATC 3 cut(s) 889, 1024, 1034
BstMBI GATC 3 cut(s) 886, 1021, 1031
BstMCI CGRYCG 1 cut(s) 889
BstMWI GCNNNNNNNGC 2 cut(s) 911, 1074
BstNI CCWGG 2 cut(s) 244, 626
BstSCI CCNGG 2 cut(s) 242, 624
BstSFI CTRYAG 2 cut(s) 870, 915
BstUI CGCG 2 cut(s) 334, 351
BstV1I GCAGC 4 cut(s) 103, 259, 889, 901
BstV2I GAAGAC 2 cut(s) 169, 335
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
Bsu15I ATCGAT 1 cut(s) 1030
BsuRI GGCC 3 cut(s) 432, 624, 657
BsuTUI ATCGAT 1 cut(s) 1030
BtsCI GGATG 2 cut(s) 825, 955
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 5 cut(s) 186, 228, 736, 942, 1050
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 4 cut(s) 13, 304, 336, 353
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 866
ClaI ATCGAT 1 cut(s) 1030
CseI GACGC 1 cut(s) 340
CviAII CATG 2 cut(s) 466, 572
DdeI CTNAG 4 cut(s) 291, 320, 764, 1092
DinI GGCGCC 1 cut(s) 12
DpnI GATC 3 cut(s) 888, 1023, 1033
DpnII GATC 3 cut(s) 886, 1021, 1031
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 622
Eam1104I CTCTTC 3 cut(s) 21, 413, 996
EarI CTCTTC 3 cut(s) 21, 413, 996
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 1036
EcoRII CCWGG 2 cut(s) 242, 624
EcoT14I CCWWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 553
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 2 cut(s) 469, 575
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 465, 571
FauI CCCGC 1 cut(s) 597
FauNDI CATATG 1 cut(s) 718
Fnu4HI GCNGC 4 cut(s) 92, 248, 903, 915
FokI GGATG 2 cut(s) 812, 962
Fsp4HI GCNGC 4 cut(s) 92, 248, 903, 915
FspBI CTAG 1 cut(s) 882
GlaI GCGC 4 cut(s) 12, 303, 335, 352
GluI GCNGC 4 cut(s) 92, 248, 903, 915
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 3 cut(s) 432, 624, 657
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 340
HhaI GCGC 4 cut(s) 13, 304, 336, 353
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 469, 575
Hin6I GCGC 4 cut(s) 11, 302, 334, 351
HinP1I GCGC 4 cut(s) 11, 302, 334, 351
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 7 cut(s) 236, 311, 365, 374, 821, 995, 1006
HpaII CCGG 1 cut(s) 88
HphI GGTGA 3 cut(s) 36, 37, 245
Hpy166II GTNNAC 2 cut(s) 240, 586
Hpy188I TCNGA 6 cut(s) 294, 310, 316, 765, 1000, 1063
Hpy188III TCNNGA 4 cut(s) 144, 344, 784, 864
Hpy8I GTNNAC 2 cut(s) 240, 586
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 5 cut(s) 133, 443, 503, 643, 684
HpyCH4III ACNGT 8 cut(s) 42, 265, 583, 731, 803, 946, 967, 1045
HpyCH4V TGCA 6 cut(s) 175, 551, 872, 905, 917, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 911, 1074
HpyF3I CTNAG 4 cut(s) 291, 320, 764, 1092
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 469, 575
HspAI GCGC 4 cut(s) 11, 302, 334, 351
KasI GGCGCC 1 cut(s) 10
Kzo9I GATC 3 cut(s) 886, 1021, 1031
LmnI GCTCC 4 cut(s) 59, 262, 316, 775
Lsp1109I GCAGC 4 cut(s) 103, 259, 889, 901
LweI GCATC 1 cut(s) 1059
MaeI CTAG 1 cut(s) 882
MaeIII GTNAC 3 cut(s) 42, 577, 721
MalI GATC 3 cut(s) 888, 1023, 1033
MboI GATC 3 cut(s) 886, 1021, 1031
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 5 cut(s) 555, 697, 790, 796, 807
MluNI TGGCCA 1 cut(s) 624
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 2 cut(s) 245, 374
MmeI TCCRAC 2 cut(s) 475, 688
Mox20I TGGCCA 1 cut(s) 624
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 2 cut(s) 1005, 1087
MscI TGGCCA 1 cut(s) 624
MseI TTAA 2 cut(s) 545, 554
MslI CAYNNNNRTG 1 cut(s) 49
Msp20I TGGCCA 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 244, 626
Mva1269I GAATGC 2 cut(s) 177, 1070
MvaI CCWGG 2 cut(s) 244, 626
MvnI CGCG 2 cut(s) 334, 351
MwoI GCNNNNNNNGC 2 cut(s) 911, 1074
NarI GGCGCC 1 cut(s) 11
NdeI CATATG 1 cut(s) 718
NdeII GATC 3 cut(s) 886, 1021, 1031
NlaIII CATG 2 cut(s) 469, 575
NlaIV GGNNCC 2 cut(s) 12, 630
NmuCI GTSAC 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 553
NspV TTCGAA 1 cut(s) 416
OliI CACNNNNGTG 1 cut(s) 49
PceI AGGCCT 1 cut(s) 432
PctI GAATGC 2 cut(s) 177, 1070
PdmI GAANNNNTTC 2 cut(s) 1005, 1087
PfeI GAWTC 5 cut(s) 311, 374, 821, 995, 1006
PkrI GCNGC 4 cut(s) 93, 249, 904, 916
Ple19I CGATCG 1 cut(s) 889
PleI GAGTC 2 cut(s) 244, 373
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 2 cut(s) 244, 373
PshBI ATTAAT 1 cut(s) 554
PsiI TTATAA 1 cut(s) 897
Psp6I CCWGG 2 cut(s) 242, 624
PspGI CCWGG 2 cut(s) 242, 624
PspN4I GGNNCC 2 cut(s) 12, 630
PspPI GGNCC 1 cut(s) 866
PstI CTGCAG 2 cut(s) 874, 919
PsuI RGATCY 1 cut(s) 1021
PvuI CGATCG 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 49
SaqAI TTAA 2 cut(s) 545, 554
SatI GCNGC 4 cut(s) 92, 248, 903, 915
Sau3AI GATC 3 cut(s) 886, 1021, 1031
Sau96I GGNCC 1 cut(s) 866
SchI GAGTC 2 cut(s) 245, 374
ScrFI CCNGG 2 cut(s) 244, 626
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 1059
SfcI CTRYAG 2 cut(s) 870, 915
SfoI GGCGCC 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 866
SmiI ATTTAAAT 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 49
SmlI CTYRAG 2 cut(s) 751, 784
SmoI CTYRAG 2 cut(s) 751, 784
Sse9I AATT 5 cut(s) 555, 697, 790, 796, 807
SseBI AGGCCT 1 cut(s) 432
SsiI CCGC 3 cut(s) 5, 114, 604
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 1 cut(s) 882
StuI AGGCCT 1 cut(s) 432
StyD4I CCNGG 2 cut(s) 242, 624
StyI CCWWGG 1 cut(s) 640
SwaI ATTTAAAT 1 cut(s) 546
TaaI ACNGT 8 cut(s) 42, 265, 583, 731, 803, 946, 967, 1045
TaqI TCGA 3 cut(s) 143, 416, 1030
TasI AATT 5 cut(s) 555, 697, 790, 796, 807
TfiI GAWTC 5 cut(s) 311, 374, 821, 995, 1006
Tru1I TTAA 2 cut(s) 545, 554
Tru9I TTAA 2 cut(s) 545, 554
TscAI CASTG 5 cut(s) 186, 235, 736, 949, 1050
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 4 cut(s) 91, 247, 902, 914
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 6 cut(s) 464, 560, 852, 966, 974, 1005
TspRI CASTG 5 cut(s) 186, 235, 736, 949, 1050
VpaK11BI GGWCC 1 cut(s) 866
VspI ATTAAT 1 cut(s) 554
XapI RAATTY 1 cut(s) 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XmnI GAANNNNTTC 2 cut(s) 1005, 1087
XspI CTAG 1 cut(s) 882
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.