Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005400

Physical Location & Seq

Genomic Coordinates Reverse (-)

57802703 .. 57805618

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGAGCTTTTAGAGTTGAGGACTTACCAATTGAGTCCAAGATGCTGACCAAAGCACTAGATGAAGCTCAGCGGAAAGTGGAAAACTATTTTTTTGATATTCGAAAGCAATTGTTTGAATTTGATGAAGTCCTAAACAGCCAAAGAGACTGTGTGTATATGGAAAGAAGGAGAGCCCTTGAATCTGACAATCTACAATCACTTATAATTGAATATGCTGAACTAACAATGGATGATATCTTAGAGGCAAATATTGGTTCAGAGTCTTCAAAAGAAAGCTGGGATCTTGATAAGCTCATCAAGAAACTTCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

105

Amino Acids

12.53

Weight (kDa)

4.66

Isoelectric Point (pI)

71.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecA_SW	PF07516	10 - 105	6.1e-29	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01800 AT4G01800 AT4G01800
fragaria_vesca	FvH4_1g26240
malus_domestica	MD17G1285000.v1.1
prunus_persica	Prupe.3G002700_v2.0.a1
pyrus_communis	pycom09g19850 pycom17g28080 pycom17g28090
rosa_chinensis	RchiOBHm_Chr3g0485781
rosa_laevigata	RLG00000023125
rosa_multiflora	Rmu_co8471925.1_g000001 Rmu_sc0012870.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123840
rosa_rugosa	Rorug03G0221400
rosa_samantha	Rh1AG180100 Rh1CG167100 Rh3AG270700 Rh3BG306200 Rh3BG306300 Rh3CG304600 Rh3DG300700 Rh4AG241300 Rh4AG241400 Rh4BG244600 Rh4BG244700 Rh4CG255400 Rh7CG119700
rosa_wichuraiana	Rw3G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	119
AgsI	TTSAA	5 cut(s)	119, 182, 212, 270, 311
AluBI	AGCT	4 cut(s)	8, 68, 279, 295
AluI	AGCT	4 cut(s)	8, 68, 279, 295
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	59
BlpI	GCTNAGC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	103
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	141
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	82
BspPI	GGATC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	103
BssMI	GATC	1 cut(s)	283
Bst4CI	ACNGT	2 cut(s)	152, 315
BstBI	TTCGAA	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	69, 241
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	238
CviJI	RGCY	6 cut(s)	8, 68, 141, 176, 279, 295
CviKI_1	RGCY	6 cut(s)	8, 68, 141, 176, 279, 295
DdeI	CTNAG	2 cut(s)	69, 241
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	178
FaiI	YATR	4 cut(s)	159, 161, 206, 216
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	35, 182, 263
Hpy188I	TCNGA	2 cut(s)	187, 262
Hpy188III	TCNNGA	2 cut(s)	287, 301
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	2 cut(s)	152, 315
HpyF3I	CTNAG	2 cut(s)	69, 241
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	1 cut(s)	265
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	59
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	258
MfeI	CAATTG	2 cut(s)	30, 110
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	4 cut(s)	30, 110, 119, 207
MlyI	GAGTC	2 cut(s)	44, 272
MnlI	CCTC	2 cut(s)	13, 238
MspA1I	CMGCKG	1 cut(s)	73
MunI	CAATTG	2 cut(s)	30, 110
NdeII	GATC	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	43, 271
PpsI	GAGTC	2 cut(s)	43, 271
PsiI	TTATAA	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	283
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	44, 272
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	10, 70, 281, 297
SfaNI	GCATC	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	103
SgeI	CNNG	6 cut(s)	52, 71, 191, 292, 299, 313
Sse9I	AATT	4 cut(s)	30, 110, 119, 207
SsiI	CCGC	1 cut(s)	73
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	152, 315
TaqI	TCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	30, 110, 119, 207
TfiI	GAWTC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	78, 141
XapI	RAATTY	1 cut(s)	119
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.