Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005400

Physical Location & Seq

Genomic Coordinates Reverse (-)

34145671 .. 34150723

Gene Structure 5053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTTCACTCATACAGCAATGTGGCCACTGGCTTTGCAGCGAAACTGACACTAGAGGAAGTGAAAGTAATGGAAAAGAAAGATGGGTTCGTGCATGCTCATCCAGAGAGAATCAAAGCACTAGTGAAAGCCATTCACTCTACTCCCACGCAGTCTGTTCTCTATCTCTCCGGCGGAGCCTCTCAGGATGAGTCTGATGTAGTTTTCAGGGCAGCTACAGGTCGAGGAACAAACATAATCCTTGGTGGGAATGTAGAATTTATGGCGAGGTTGAAGCTGCGTGAGATGCTTATGCCAAGAGTTGTAAAACTAACTGAAGGAGGTTATGTCTCAGTGAAAAAACTTCCGCCGAAAAAATCTTGGAAGGTTAATGAAAAGCTATTTCCATGCAAACTGTCCAATGAAAAGACCAAATTAGCTGAGGAAGCTGTGAATTTAGCTGTTGAAACTTGGGGTCAGAGATCATTGACAGAGCTTGAAGCAGAGGAGCGTCTTTCTTATTCTTGCGAAAAGGGACCTGCTTTGGATGAAGTGATAGCCAAACTGCGGAGTGCTTTTTTAGAAATCATGAAAGAATATAAGGGCTACACAGAGGAAGAAAGGAAGAAGGTTGTGTCAGCTGGTGGACTTCATGTTGTCAGGACAGAACGCCATGAATCTCGCCGAGTTGATAATCAGGCAAATATTGGTTCAAAGTCTTCAAAAGAAAGCTGGGATCTTGATAAGCTCATCAAGAAACTTCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

249

Amino Acids

27.92

Weight (kDa)

9.3

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	71 - 227	1.4e-15	SecA P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01800 AT4G01800 AT4G01800
fragaria_vesca	FvH4_1g26240
malus_domestica	MD17G1285000.v1.1
prunus_persica	Prupe.3G002700_v2.0.a1
pyrus_communis	pycom09g19850 pycom17g28080 pycom17g28090
rosa_chinensis	RchiOBHm_Chr3g0485781
rosa_laevigata	RLG00000023125
rosa_multiflora	Rmu_co8471925.1_g000001 Rmu_sc0012870.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123840
rosa_rugosa	Rorug03G0221400
rosa_samantha	Rh1AG180100 Rh1CG167100 Rh3AG270700 Rh3BG306200 Rh3BG306300 Rh3CG304600 Rh3DG300700 Rh4AG241300 Rh4AG241400 Rh4BG244600 Rh4BG244700 Rh4CG255400 Rh7CG119700
rosa_wichuraiana	Rw3G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AciI	CCGC	3 cut(s)	174, 347, 547
AclWI	GGATC	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	2 cut(s)	257, 433
AcuI	CTGAAG	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	6 cut(s)	274, 446, 479, 693, 702, 743
AhlI	ACTAGT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	723
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	38, 212, 277
ApoI	RAATTY	2 cut(s)	257, 433
AspS9I	GGNCC	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	50, 224, 264
BccI	CCATC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	334
BcuI	ACTAGT	1 cut(s)	121
BfaI	CTAG	2 cut(s)	53, 122
BfmI	CTRYAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	3 cut(s)	39, 213, 278
BlsI	GCNGC	3 cut(s)	40, 214, 279
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	178, 516
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	3 cut(s)	100, 193, 532
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	197, 345, 411
BseNI	ACTGG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	50, 224, 264
BseYI	CCCAGC	1 cut(s)	711
BshFI	GGCC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	461, 715
BspACI	CCGC	3 cut(s)	174, 347, 547
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	3 cut(s)	196, 344, 412
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	178, 516
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	461, 715
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	396, 747
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	183, 331, 420
BstF5I	GGATG	3 cut(s)	100, 193, 532
BstKTI	GATC	2 cut(s)	464, 718
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	461, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 425
BstNSI	RCATGY	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	50, 224, 264
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuRI	GGCC	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	100, 193, 532
BtsIMutI	CAGTG	2 cut(s)	27, 339
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	515
CseI	GACGC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	5 cut(s)	95, 387, 568, 632, 653
DdeI	CTNAG	3 cut(s)	183, 331, 420
DpnI	GATC	2 cut(s)	463, 717
DpnII	GATC	2 cut(s)	461, 715
EaeI	YGGCCR	1 cut(s)	24
EciI	GGCGGA	2 cut(s)	189, 336
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	5 cut(s)	98, 390, 571, 635, 656
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	5 cut(s)	94, 386, 567, 631, 652
Fnu4HI	GCNGC	3 cut(s)	39, 213, 278
FokI	GGATG	3 cut(s)	87, 200, 539
Fsp4HI	GCNGC	3 cut(s)	39, 213, 278
FspBI	CTAG	2 cut(s)	53, 122
GluI	GCNGC	3 cut(s)	39, 213, 278
GsaI	CCCAGC	1 cut(s)	715
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	5 cut(s)	98, 390, 571, 635, 656
HinfI	GANTC	3 cut(s)	111, 191, 656
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	2 cut(s)	7, 626
Hpy188I	TCNGA	2 cut(s)	196, 459
Hpy188III	TCNNGA	6 cut(s)	104, 185, 568, 640, 719, 733
Hpy8I	GTNNAC	2 cut(s)	7, 626
HpyAV	CCTTC	3 cut(s)	311, 358, 601
HpyCH4III	ACNGT	2 cut(s)	396, 747
HpyCH4V	TGCA	3 cut(s)	38, 94, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 425
HpyF3I	CTNAG	3 cut(s)	183, 331, 420
Hsp92II	CATG	5 cut(s)	98, 390, 571, 635, 656
Kzo9I	GATC	2 cut(s)	461, 715
LmnI	GCTCC	2 cut(s)	176, 487
Lsp1109I	GCAGC	3 cut(s)	50, 224, 264
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	53, 122
MalI	GATC	2 cut(s)	463, 717
MboI	GATC	2 cut(s)	461, 715
MboII	GAAGA	3 cut(s)	608, 616, 690
MflI	RGATCY	1 cut(s)	715
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	3 cut(s)	257, 413, 433
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	8 cut(s)	49, 190, 218, 261, 314, 415, 478, 586
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	286, 425
NdeII	GATC	2 cut(s)	461, 715
NlaIII	CATG	5 cut(s)	98, 390, 571, 635, 656
NlaIV	GGNNCC	2 cut(s)	178, 516
NmeAIII	GCCGAG	1 cut(s)	689
NspI	RCATGY	1 cut(s)	98
PaeI	GCATGC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	111, 656
PkrI	GCNGC	3 cut(s)	40, 214, 279
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
PspFI	CCCAGC	1 cut(s)	711
PspN4I	GGNNCC	2 cut(s)	178, 516
PspPI	GGNCC	1 cut(s)	515
PspPPI	RGGWCCY	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	39, 213, 278
Sau3AI	GATC	2 cut(s)	461, 715
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	515
SpeI	ACTAGT	1 cut(s)	121
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	3 cut(s)	257, 413, 433
SsiI	CCGC	3 cut(s)	174, 347, 547
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	2 cut(s)	53, 122
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	396, 747
TaqI	TCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	257, 413, 433
TfiI	GAWTC	2 cut(s)	111, 656
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	34, 339
TseI	GCWGC	3 cut(s)	38, 212, 277
TspDTI	ATGAA	6 cut(s)	387, 417, 543, 584, 620, 669
TspRI	CASTG	2 cut(s)	34, 339
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	2 cut(s)	257, 433
XceI	RCATGY	1 cut(s)	98
XspI	CTAG	2 cut(s)	53, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.