Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005400

Physical Location & Seq

Genomic Coordinates Reverse (-)

9139974 .. 9141176

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG119700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAGAGATTTCCTTCTTGAAATTGAAATTTTGCAATCTGTATCTATACAGTTGCGTGGTCGAACTGGACGGCAGGGGGATCCTGGAAGTTCACGCTTCTTCTTAAGTCTTGAAGATAACATCTTTCGTATATTTGGTGGAGATCGTATTCAGGGTTTAATGAGAGCTTTTAGAGTTGAAGACTTGCCAATTGAGTCCAAGATGCTGACCAAAGCACTAGATGAAGCTCAGTGGAAAGTGGAAAACTATTTTTTTGATATTCGAAAGCAATTGTTTGAATTTGATGAAGTCCTAAACAGCCAAAGAGATCGTGTGTATACGGAAAGAAGGAGAGCCCTTGAATCTGACAATCTGCAATCACTTATAATTGAATATGCTGAACTAACAATGGATGATATCTTAGAGCCAAATATTGGTTCAGAGTCTTCAAAAGAAAGCTGGGATCTTGATAAGCTCATCAAGAAACTTCAACAATATTGCCATCTATTGAATGATTTGACGCCGGATGTGCTGAGGAGCGAATGTTCAAGTTATGAAGATTTGCAGGACTACGTCCGTCTTCGAGGTTGTGAAGCATATTTGCAGAAAAGGGTCAGTATGAGAAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005524 GO:0006810 GO:0008104 GO:0008144 GO:0008150 GO:0008320 GO:0008565 GO:0015031 GO:0015399 GO:0015405 GO:0015440 GO:0015450 GO:0015462 GO:0015833 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022804 GO:0022857 GO:0022884 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033220 GO:0035639 GO:0036094 GO:0042623 GO:0042626 GO:0042886 GO:0042887 GO:0043167 GO:0043168 GO:0043492 GO:0045184 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071806 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SecA_DEAD SecA_PP_bind SecA_SW

Protein Analysis

203

Amino Acids

24.0

Weight (kDa)

4.91

Isoelectric Point (pI)

72.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
P-loop_SecA	PF21090	16 - 61	5.8e-17	SecA P-loop domain
SecA_SW	PF07516	63 - 182	1.4e-28	SecA Wing and Scaffold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01800 AT4G01800 AT4G01800
fragaria_vesca	FvH4_1g26240
malus_domestica	MD17G1285000.v1.1
prunus_persica	Prupe.3G002700_v2.0.a1
pyrus_communis	pycom09g19850 pycom17g28080 pycom17g28090
rosa_chinensis	RchiOBHm_Chr3g0485781
rosa_laevigata	RLG00000023125
rosa_multiflora	Rmu_co8471925.1_g000001 Rmu_sc0012870.1_g000002
rosa_roxburghii	Rroxscaffold_2G00123840
rosa_rugosa	Rorug03G0221400
rosa_samantha	Rh1AG180100 Rh1CG167100 Rh3AG270700 Rh3BG306200 Rh3BG306300 Rh3CG304600 Rh3DG300700 Rh4AG241300 Rh4AG241400 Rh4BG244600 Rh4BG244700 Rh4CG255400 Rh7CG119700
rosa_wichuraiana	Rw3G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	317
AclWI	GGATC	3 cut(s)	74, 87, 450
AcsI	RAATTY	2 cut(s)	27, 278
AcyI	GRCGYC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflII	CTTAAG	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AloI	GAACNNNNNNTCC	2 cut(s)	508, 540
AluBI	AGCT	4 cut(s)	167, 227, 438, 454
AluI	AGCT	4 cut(s)	167, 227, 438, 454
AlwI	GGATC	3 cut(s)	74, 87, 450
ApoI	RAATTY	2 cut(s)	27, 278
AsuII	TTCGAA	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	3 cut(s)	186, 417, 551
BbvCI	CCTCAGC	1 cut(s)	512
BccI	CCATC	1 cut(s)	489
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	84
BfaI	CTAG	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	3 cut(s)	186, 417, 551
Bpu10I	CCTNAGC	1 cut(s)	512
Bpu14I	TTCGAA	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	397, 511
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	2 cut(s)	242, 503
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	79, 142, 307, 442
BspCNI	CTCAG	2 cut(s)	241, 504
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	74, 87, 450
BspT104I	TTCGAA	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	4 cut(s)	79, 142, 307, 442
BssNAI	GTATAC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	500
Bst1107I	GTATAC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	500
BstAFI	CTTAAG	1 cut(s)	103
BstBI	TTCGAA	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	228, 400, 512
BstF5I	GGATG	2 cut(s)	397, 511
BstKTI	GATC	4 cut(s)	82, 145, 310, 445
BstMBI	GATC	4 cut(s)	79, 142, 307, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV2I	GAAGAC	3 cut(s)	186, 417, 551
BstX2I	RGATCY	2 cut(s)	79, 442
BstYI	RGATCY	2 cut(s)	79, 442
BstZ17I	GTATAC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	397, 511
BtsIMutI	CAGTG	1 cut(s)	236
CseI	GACGC	1 cut(s)	508
CviJI	RGCY	7 cut(s)	167, 227, 300, 335, 406, 438, 454
CviKI_1	RGCY	7 cut(s)	167, 227, 300, 335, 406, 438, 454
DdeI	CTNAG	3 cut(s)	228, 400, 512
DpnI	GATC	4 cut(s)	81, 144, 309, 444
DpnII	GATC	4 cut(s)	79, 142, 307, 442
Eco24I	GRGCYC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	337
FaiI	YATR	8 cut(s)	47, 131, 318, 365, 375, 534, 577, 599
FblI	GTMKAC	1 cut(s)	317
FokI	GGATG	2 cut(s)	404, 518
FriOI	GRGCYC	1 cut(s)	337
FspBI	CTAG	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	442
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	508
Hin1I	GRCGYC	1 cut(s)	500
HinfI	GANTC	3 cut(s)	194, 341, 422
HpaII	CCGG	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	92, 318
Hpy188I	TCNGA	2 cut(s)	346, 421
Hpy188III	TCNNGA	4 cut(s)	17, 110, 446, 460
Hpy8I	GTNNAC	2 cut(s)	92, 318
HpyAV	CCTTC	2 cut(s)	23, 321
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	4 cut(s)	34, 355, 544, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	3 cut(s)	228, 400, 512
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	1 cut(s)	500
Kzo9I	GATC	4 cut(s)	79, 142, 307, 442
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	8 cut(s)	51, 59, 69, 96, 137, 424, 516, 530
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	552
MalI	GATC	4 cut(s)	81, 144, 309, 444
MboI	GATC	4 cut(s)	79, 142, 307, 442
MboII	GAAGA	6 cut(s)	91, 125, 191, 417, 548, 551
MfeI	CAATTG	2 cut(s)	189, 269
MflI	RGATCY	2 cut(s)	79, 442
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	6 cut(s)	21, 27, 189, 269, 278, 366
MlyI	GAGTC	2 cut(s)	203, 431
MnlI	CCTC	2 cut(s)	507, 557
MseI	TTAA	3 cut(s)	104, 158, 610
MspCI	CTTAAG	1 cut(s)	103
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	2 cut(s)	189, 269
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeII	GATC	4 cut(s)	79, 142, 307, 442
NlaIV	GGNNCC	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	551
PflMI	CCANNNNNTGG	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	82
PleI	GAGTC	2 cut(s)	202, 430
PpsI	GAGTC	2 cut(s)	202, 430
PsiI	TTATAA	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	81
PsuI	RGATCY	2 cut(s)	79, 442
PsyI	GACNNNGTC	1 cut(s)	551
SaqAI	TTAA	3 cut(s)	104, 158, 610
Sau3AI	GATC	4 cut(s)	79, 142, 307, 442
SchI	GAGTC	2 cut(s)	203, 431
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	169, 229, 440, 456, 555, 568
SfaNI	GCATC	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	262
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	6 cut(s)	21, 27, 189, 269, 278, 366
SspI	AATATT	2 cut(s)	412, 476
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	61, 262, 562
TasI	AATT	6 cut(s)	21, 27, 189, 269, 278, 366
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	104, 158, 610
Tru9I	TTAA	3 cut(s)	104, 158, 610
TscAI	CASTG	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	237, 300, 549
TspGWI	ACGGA	2 cut(s)	335, 545
TspRI	CASTG	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	551
Van91I	CCANNNNNTGG	1 cut(s)	413
Vha464I	CTTAAG	1 cut(s)	103
XapI	RAATTY	2 cut(s)	27, 278
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.