Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004208

Physical Location & Seq

Genomic Coordinates Reverse (-)

3644977 .. 3648893

Gene Structure 3917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATTCATAACGTTTATTTATTTTTCTTTTCTTCTCTCAAAAAATTAAAATTTAGTTCAATTTGTATTTTTTTTTTCTGGATAAATATCCAAGCTTCTAAAGTTGCAACGTCAAAATTACTCTTATTGGAAATGGTAGAAGTTGCAGTTCCTACCGGCGTTCATATCAGACCCTTTCTTTCTGTAAGCCCACATCATCCAATTCGTCGCACAATAGTGGTAACAAAGACAAAACCATGGAAGATTCGTAGAGTTGCAGCTTCTTCTTCTTCTTCTTCTACTACTACTAGTGCTTGTGGGTATAAACAAACGGTTGAGGATGGACAACAAGTAGTGTTGCCAAACAAGGCAAGCAAGAAAAGGGTCTTCTTTTTAGACGTCAATCCTCTCTGCTATGCTGGAAGCAGACCCAGCTTACACGCTTTTGCTCATTGGGTCTCCTTATTTTTCAATCAAGTTAGCCTATCTAACCCTGTTATTGCTGTTGTTGATGGCGAAGGAGGAAGTGAGCACCGCAGACAGTTATTACCATCTTATAAAGCACACAGGTGGAAATTCACAACACAGTTTTCAAAGGGGCATGTTGGAAGGTCACATGGAGTCATCACCAATGTTCTTAGAAAATGCAATGTGCCTGTCATAAAAGTAGAAGGTCATGAAGCTGATGATGTTATAGCTACACTTGTTGGGAAAGTTCTTCAAACAGGATATCGGGTGGTGATTGCCTCTCCTGATAAAGATTTTAAGCAATTGCTTTCGGAAGATGTCCAGCTTGTTGTGCCCCTGGATGAGTTAGAACGCTGGTCGTTTTACACTCTTAAGCACTACATTGCTCAGTATAACTGTGATCCATGCTGTGATTTGAGCCTTATGTGGGTCCAACAAGATCGATCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_3_exonuc 5_3_exonuc_N

Protein Analysis

300

Amino Acids

33.85

Weight (kDa)

9.61

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	141 - 265	5.5e-22	5'-3' exonuclease, N-terminal resolvase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34380 AT1G34380 AT1G34380
fragaria_vesca	FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160 FvH4_2g12160
malus_domestica	MD05G1040800.v1.1 MD10G1046800.v1.1
prunus_persica	Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1 Prupe.8G055700_v2.0.a1
pyrus_communis	pycom05g03340 pycom05g03350 pycom10g03310
rosa_chinensis	RchiOBHm_Chr6g0272141
rosa_laevigata	RLG00000013698
rosa_multiflora	Rmu_co7960774.1_g000001 Rmu_sc0004606.1_g000001 Rmu_sc0008168.1_g000006 Rmu_sc0013301.1_g000010 Rmu_sc0027055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00196560
rosa_rugosa	Rorug06G0066000
rosa_samantha	Rh6AG183200 Rh6BG183900 Rh6CG184500 Rh6DG176200
rosa_wichuraiana	Rw6G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AatII	GACGTC	1 cut(s)	381
AciI	CCGC	1 cut(s)	514
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	50, 554
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	874
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	4 cut(s)	60, 451, 573, 701
AhlI	ACTAGT	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	783
AleI	CACNNNNGTG	2 cut(s)	215, 547
AluBI	AGCT	6 cut(s)	95, 260, 414, 662, 677, 772
AluI	AGCT	6 cut(s)	95, 260, 414, 662, 677, 772
Alw21I	GWGCWC	1 cut(s)	513
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	842
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	50, 554
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	2 cut(s)	598, 730
AvaII	GGWCC	1 cut(s)	877
BaeGI	GKGCMC	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	3 cut(s)	314, 485, 538
BciT130I	CCWGG	1 cut(s)	785
BcoDI	GTCTC	1 cut(s)	442
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	1 cut(s)	288
BfrI	CTTAAG	1 cut(s)	818
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	1 cut(s)	878
BmrFI	CCNGG	1 cut(s)	785
BpiI	GAAGAC	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	236, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	874
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	2 cut(s)	634, 828
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	785
BseCI	ATCGAT	1 cut(s)	889
BseDI	CCNNGG	2 cut(s)	236, 783
BseGI	GGATG	3 cut(s)	196, 325, 793
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	874
BseMI	GCAATG	2 cut(s)	634, 828
BseMII	CTCAG	1 cut(s)	848
BseSI	GKGCMC	1 cut(s)	783
BseXI	GCAGC	1 cut(s)	269
BseYI	CCCAGC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	874
BsmAI	GTCTC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	513, 783
Bsp143I	GATC	3 cut(s)	847, 886, 890
Bsp19I	CCATGG	1 cut(s)	236
BspACI	CCGC	1 cut(s)	514
BspCNI	CTCAG	1 cut(s)	847
BspDI	ATCGAT	1 cut(s)	889
BspHI	TCATGA	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	878
BspPI	GGATC	1 cut(s)	842
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	442
BsrDI	GCAATG	2 cut(s)	634, 828
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	236, 783
BssMI	GATC	3 cut(s)	847, 886, 890
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	4 cut(s)	313, 522, 567, 845
BstACI	GRCGYC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	818
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	617, 834
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	196, 325, 793
BstKTI	GATC	3 cut(s)	850, 889, 893
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	847, 886, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	411, 778
BstNI	CCWGG	1 cut(s)	785
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	783
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	889
BsuTUI	ATCGAT	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	3 cut(s)	196, 325, 793
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	877
ClaI	ATCGAT	1 cut(s)	889
CviAII	CATG	5 cut(s)	237, 581, 596, 656, 852
CviJI	RGCY	9 cut(s)	95, 189, 260, 414, 462, 662, 677, 772, 867
CviKI_1	RGCY	9 cut(s)	95, 189, 260, 414, 462, 662, 677, 772, 867
DdeI	CTNAG	2 cut(s)	617, 834
DpnI	GATC	3 cut(s)	849, 888, 892
DpnII	GATC	3 cut(s)	847, 886, 890
Eco130I	CCWWGG	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	877
EcoRII	CCWGG	1 cut(s)	783
EcoRV	GATATC	1 cut(s)	710
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	5 cut(s)	240, 584, 599, 659, 855
FatI	CATG	5 cut(s)	236, 580, 595, 655, 851
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	3 cut(s)	183, 332, 800
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	1 cut(s)	258
GsaI	CCCAGC	1 cut(s)	414
HapII	CCGG	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	5 cut(s)	240, 584, 599, 659, 855
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	3 cut(s)	4, 244, 600
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	598, 730
Hpy188I	TCNGA	2 cut(s)	170, 760
Hpy188III	TCNNGA	3 cut(s)	79, 656, 731
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	3 cut(s)	491, 582, 644
HpyCH4III	ACNGT	4 cut(s)	313, 522, 567, 845
HpyCH4IV	ACGT	3 cut(s)	12, 110, 378
HpyCH4V	TGCA	4 cut(s)	107, 146, 257, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	411, 778
HpyF3I	CTNAG	2 cut(s)	617, 834
HpySE526I	ACGT	3 cut(s)	12, 110, 378
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	240, 584, 599, 659, 855
Kzo9I	GATC	3 cut(s)	847, 886, 890
Lsp1109I	GCAGC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	3 cut(s)	12, 110, 378
MaeIII	GTNAC	2 cut(s)	220, 591
MalI	GATC	3 cut(s)	849, 888, 892
MboI	GATC	3 cut(s)	847, 886, 890
MfeI	CAATTG	1 cut(s)	749
MhlI	GDGCHC	2 cut(s)	513, 783
MluCI	AATT	7 cut(s)	44, 50, 60, 116, 201, 554, 749
MlyI	GAGTC	1 cut(s)	609
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	4 cut(s)	310, 396, 494, 736
MseI	TTAA	3 cut(s)	47, 744, 819
MslI	CAYNNNNRTG	2 cut(s)	215, 547
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	785
MunI	CAATTG	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	785
MwoI	GCNNNNNNNGC	2 cut(s)	411, 778
NcoI	CCATGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	847, 886, 890
NlaIII	CATG	5 cut(s)	240, 584, 599, 659, 855
NlaIV	GGNNCC	1 cut(s)	878
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	584
OliI	CACNNNNGTG	2 cut(s)	215, 547
PagI	TCATGA	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	4, 244
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PsiI	TTATAA	1 cut(s)	537
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	878
PspPI	GGNCC	1 cut(s)	877
RseI	CAYNNNNRTG	2 cut(s)	215, 547
SaqAI	TTAA	3 cut(s)	47, 744, 819
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	3 cut(s)	847, 886, 890
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	1 cut(s)	609
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	513, 783
SinI	GGWCC	1 cut(s)	877
SmiMI	CAYNNNNRTG	2 cut(s)	215, 547
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
SpeI	ACTAGT	1 cut(s)	287
Sse9I	AATT	7 cut(s)	44, 50, 60, 116, 201, 554, 749
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	783
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	4 cut(s)	313, 522, 567, 845
TaiI	ACGT	3 cut(s)	15, 113, 381
TaqI	TCGA	1 cut(s)	889
TasI	AATT	7 cut(s)	44, 50, 60, 116, 201, 554, 749
TfiI	GAWTC	2 cut(s)	4, 244
Tru1I	TTAA	3 cut(s)	47, 744, 819
Tru9I	TTAA	3 cut(s)	47, 744, 819
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	2 cut(s)	152, 672
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	2 cut(s)	50, 554
XceI	RCATGY	1 cut(s)	584
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.