Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005667

Physical Location & Seq

Genomic Coordinates Forward (+)

5539192 .. 5539773

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATTTGGGAAAATTTTCAAGGGCAAACTCCATGGACGAAGAATTCGAATTCTTGGAAATCGAAGACGGAGAAGAAATCTTGGGTCTCACACACTGGGAATTCATCGACGCCTCCGACGCCGACTCAGAGGAAAACCACCACCACCACCGCTCCGACTCCGAACAAACGGACAAAGACGAAGAAGCAAATCGGTTCGATAGGCTTATCATCGGGCCCGCTTCATTTTCCCCTTTGATCCCTCCGCCGGTGGCCGATCCGATTCCCGCCCAACGTCGTCGCCGCCCCCATCTCGTCCGATTTGTGGATGTGGGTCTCAATCTCAAACTCCGTAGCGATTGGGACGACGGCAGCGATGAGGATGAGGGTCATGGTGAGGAGGAGGAGGAGGAGGATGGGTATGGATTAGACGACGAGCTGGTGCCGTGGTCGGTCAGCGACAAGTTCGGGCGGCAGAGGATGAGGAAATTGGGGAAGAGGATGATTCCGAAGATGAACAATTCGAAGCGGTCTCCGTACATGGTTGCGAGGCCTGGCTGCGTTCGCGGCAAGCATGGCCTGGGATTGAAGCATATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

194

Amino Acids

22.21

Weight (kDa)

4.94

Isoelectric Point (pI)

68.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34630
fragaria_vesca	FvH4_2g10040 FvH4_4g16763
malus_domestica	MD05G1058600.v1.1 MD10G1066200.v1.1
prunus_persica	Prupe.8G088200_v2.0.a1
pyrus_communis	pycom05g04950 pycom10g05170
rosa_chinensis	RchiOBHm_Chr6g0266971
rosa_laevigata	RLG00000008549 RLG00000014055
rosa_multiflora	Rmu_sc0003410.1_g000007 Rmu_sc0006020.1_g000009 Rmu_sc0011492.1_g000008 Rmu_sc0017071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048060 Rroxscaffold_7G00201250
rosa_rugosa	Rorug06G0028400
rosa_samantha	Rh2AG625900 Rh3BG182700 Rh4BG428300 Rh4CG443000 Rh4DG231200 Rh4DG245500 Rh4DG424000 Rh6AG149700 Rh6CG145700
rosa_wichuraiana	Rw6G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	153
AccII	CGCG	1 cut(s)	546
AciI	CCGC	8 cut(s)	151, 219, 245, 267, 283, 451, 508, 546
AclWI	GGATC	2 cut(s)	232, 251
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	4 cut(s)	14, 44, 50, 101
AcyI	GRCGYC	2 cut(s)	111, 120
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	247, 304
AgsI	TTSAA	2 cut(s)	21, 568
AjnI	CCWGG	2 cut(s)	532, 558
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw26I	GTCTC	3 cut(s)	92, 320, 516
AlwI	GGATC	2 cut(s)	232, 251
AoxI	GGCC	4 cut(s)	215, 252, 530, 556
ApaI	GGGCCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	351, 537
ApoI	RAATTY	4 cut(s)	14, 44, 50, 101
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	215, 216
AsuHPI	GGTGA	1 cut(s)	386
AsuII	TTCGAA	2 cut(s)	48, 503
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	1 cut(s)	560
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	363, 524
BccI	CCATC	2 cut(s)	297, 389
BceAI	ACGGC	2 cut(s)	364, 409
BciT130I	CCWGG	2 cut(s)	534, 560
BcoDI	GTCTC	3 cut(s)	92, 320, 516
BisI	GCNGC	5 cut(s)	283, 352, 452, 538, 547
BlsI	GCNGC	5 cut(s)	284, 353, 453, 539, 548
Bme1390I	CCNGG	2 cut(s)	534, 560
BmgT120I	GGNCC	2 cut(s)	215, 216
BmiI	GGNNCC	2 cut(s)	217, 423
BmrFI	CCNGG	2 cut(s)	534, 560
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	72
Bpu14I	TTCGAA	2 cut(s)	48, 503
BsaHI	GRCGYC	2 cut(s)	111, 120
BsaI	GGTCTC	3 cut(s)	92, 320, 516
BsaJI	CCNNGG	3 cut(s)	33, 425, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 304
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	534, 560
BseDI	CCNNGG	3 cut(s)	33, 425, 559
BseGI	GGATG	5 cut(s)	313, 367, 400, 465, 486
BseLI	CCNNNNNNNGG	2 cut(s)	247, 304
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	5 cut(s)	392, 395, 398, 401, 404
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	363, 524
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	4 cut(s)	217, 254, 532, 558
BshNI	GGYRCC	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	247, 304
BsmAI	GTCTC	3 cut(s)	92, 320, 516
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	217, 254, 532, 558
Bso31I	GGTCTC	3 cut(s)	92, 320, 516
Bsp119I	TTCGAA	2 cut(s)	48, 503
Bsp120I	GGGCCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	237, 256
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	8 cut(s)	151, 219, 245, 267, 283, 451, 508, 546
BspANI	GGCC	4 cut(s)	217, 254, 532, 558
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	217, 423
BspPI	GGATC	2 cut(s)	232, 251
BspT104I	TTCGAA	2 cut(s)	48, 503
BspT107I	GGYRCC	1 cut(s)	421
BspTNI	GGTCTC	3 cut(s)	92, 320, 516
BsrBI	CCGCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	33, 425, 559
BssMI	GATC	2 cut(s)	237, 256
BssNI	GRCGYC	2 cut(s)	111, 120
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	534, 560
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	2 cut(s)	111, 120
BstBI	TTCGAA	2 cut(s)	48, 503
BstC8I	GCNNGC	2 cut(s)	219, 551
BstDEI	CTNAG	1 cut(s)	127
BstDSI	CCRYGG	2 cut(s)	33, 425
BstF5I	GGATG	5 cut(s)	313, 367, 400, 465, 486
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	2 cut(s)	240, 259
BstMAI	GTCTC	3 cut(s)	92, 320, 516
BstMBI	GATC	2 cut(s)	237, 256
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 543, 546, 555
BstNI	CCWGG	2 cut(s)	534, 560
BstSCI	CCNGG	2 cut(s)	532, 558
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	363, 524
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	217, 254, 532, 558
BtgI	CCRYGG	2 cut(s)	33, 425
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	5 cut(s)	313, 367, 400, 465, 486
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	219, 551
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	2 cut(s)	215, 216
CseI	GACGC	2 cut(s)	119, 128
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	4 cut(s)	34, 371, 520, 554
CviJI	RGCY	7 cut(s)	205, 217, 254, 418, 532, 537, 558
CviKI_1	RGCY	7 cut(s)	205, 217, 254, 418, 532, 537, 558
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	239, 258
DpnII	GATC	2 cut(s)	237, 256
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	3 cut(s)	92, 320, 516
EcoRI	GAATTC	3 cut(s)	44, 50, 101
EcoRII	CCWGG	2 cut(s)	532, 558
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	37, 374, 523, 557
FaiI	YATR	6 cut(s)	35, 372, 402, 521, 555, 573
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	4 cut(s)	33, 370, 519, 553
FauI	CCCGC	2 cut(s)	226, 274
Fnu4HI	GCNGC	5 cut(s)	283, 352, 452, 538, 547
FokI	GGATG	5 cut(s)	320, 374, 407, 472, 493
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	283, 352, 452, 538, 547
GluI	GCNGC	5 cut(s)	283, 352, 452, 538, 547
HaeIII	GGCC	4 cut(s)	217, 254, 532, 558
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	2 cut(s)	119, 128
Hin1I	GRCGYC	2 cut(s)	111, 120
Hin1II	CATG	4 cut(s)	37, 374, 523, 557
HinfI	GANTC	4 cut(s)	125, 158, 262, 484
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	386
Hpy188I	TCNGA	7 cut(s)	118, 130, 157, 163, 261, 299, 489
Hpy99I	CGWCG	6 cut(s)	113, 122, 279, 282, 350, 416
HpyCH4IV	ACGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 543, 546, 555
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	2 cut(s)	111, 120
Hsp92II	CATG	4 cut(s)	37, 374, 523, 557
Kzo9I	GATC	2 cut(s)	237, 256
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	82, 261, 404, 519, 545, 546, 572
Lsp1109I	GCAGC	2 cut(s)	363, 524
MaeII	ACGT	1 cut(s)	274
MalI	GATC	2 cut(s)	239, 258
MbiI	CCGCTC	1 cut(s)	153
MboI	GATC	2 cut(s)	237, 256
MboII	GAAGA	6 cut(s)	53, 77, 86, 194, 487, 502
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	6 cut(s)	14, 44, 50, 101, 467, 499
MlyI	GAGTC	2 cut(s)	119, 152
MmeI	TCCRAC	2 cut(s)	141, 180
MroXI	GAANNNNTTC	1 cut(s)	16
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	534, 560
MvaI	CCWGG	2 cut(s)	534, 560
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	119, 543, 546, 555
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	237, 256
NlaIII	CATG	4 cut(s)	37, 374, 523, 557
NlaIV	GGNNCC	2 cut(s)	217, 423
NspV	TTCGAA	2 cut(s)	48, 503
PceI	AGGCCT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 114, 351
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	262, 484
PkrI	GCNGC	5 cut(s)	284, 353, 453, 539, 548
PleI	GAGTC	2 cut(s)	119, 152
PpsI	GAGTC	2 cut(s)	119, 152
Psp6I	CCWGG	2 cut(s)	532, 558
PspGI	CCWGG	2 cut(s)	532, 558
PspN4I	GGNNCC	2 cut(s)	217, 423
PspOMI	GGGCCC	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	215, 216
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SatI	GCNGC	5 cut(s)	283, 352, 452, 538, 547
Sau3AI	GATC	2 cut(s)	237, 256
Sau96I	GGNCC	2 cut(s)	215, 216
SchI	GAGTC	2 cut(s)	119, 152
ScrFI	CCNGG	2 cut(s)	534, 560
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	2 cut(s)	277, 420
SfuI	TTCGAA	2 cut(s)	48, 503
SgrAI	CRCCGGYG	1 cut(s)	247
Sse9I	AATT	6 cut(s)	14, 44, 50, 101, 467, 499
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	8 cut(s)	151, 219, 245, 267, 283, 451, 508, 546
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	2 cut(s)	532, 558
StyI	CCWWGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	5 cut(s)	48, 63, 108, 198, 503
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	6 cut(s)	14, 44, 50, 101, 467, 499
TauI	GCSGC	3 cut(s)	285, 454, 549
TfiI	GAWTC	2 cut(s)	262, 484
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	2 cut(s)	351, 537
TspDTI	ATGAA	3 cut(s)	94, 213, 509
TspGWI	ACGGA	4 cut(s)	84, 185, 320, 504
TspRI	CASTG	1 cut(s)	101
XapI	RAATTY	4 cut(s)	14, 44, 50, 101
XmnI	GAANNNNTTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.