pycom10g05360

Galactose binding lectin domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
5703166 .. 5706358
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05360.1

Sequence Viewer

Length: 1443 bp
ATGAGGGCTAATAGCTCAGCTTTGAGCTGGGTTCTGCTCTGCTGCTGCATAGTGTGGTCTTCTGTGTATGTTGAGGTGACAAAGTGCAATGTGGTGTATGATAGGAAGGCTCTTGTTATTGATGGGCAGAGGAGACTTCTCTTCTCTGGCTCCATTCACTATCCCAGAAGTACTCCTGAGATGTGGGAAGGTCTTATACAGAAGGCCAAAGATGGTGGCTTGGATGCCATTGACACCTATGTCTTCTGGAATCTTCATGAACCTTCTCCTGGCAATTATAATTTCGAGGGGAGGAACGATTTGGTTCGGTTCATAAAGACGGTTCACAAGGCAGGGCTCTATGTTCATCTTCGGATTGGTCCTTATATTTGTTCAGAATGGAATTTTGGGGGGTTTCCAGTTTGGCTGAAGTTTGTTCCAGGCATTAGCTTCAGAACAGATAATGAGCCTTTTAAGTCAGCAATGCAAAAATTTACACAGAAAGTTGTCCAATTGATGAAGAACGAAAAGTTATTTGAGTCACAAGGTGGCCCCATTATCCTTTCTCAGATTGAGAACGAATATGAGCCAGAAAGCAAGGTGTTTGGGGCTTCTGGTTATGCATATATGACCTGGGCTGCAAAGATGGCTGTTGGAATGGGTACCGGGGTCCCATGGGTAATGTGCAAGGAAGATGATGCCCCTGACCCAGTGATAAACACTTGCAATGGTTTTTATTGCGATTATTTTTCTCCCAACAAACCATACAAACCCACAATGTGGACCGAAGCTTGGAGTGGCTGGTTCACAGAATTTGGTGGCCCAATTTACCAGCGGCCTGTTGAAGATTTGGCATTTGCAGTTGCCAGATTCATCCAAAAAGGAGGCTCCTTCATAAATTATTACATGTACCATGGAGGAACCAACTTTGGAAGAACTGCTGGAGGCCCTTTTATAACTACCAGCTATGACTATGATGCTCCCATCGACGAATACGGCTTGATCAGGCAACCTAAGTATGGCCACTTAAAGGAACTCCATAAGGCTGTCAAGCTATGTGAGTTAGCTCTGCTGAATGCGGATCCTACTGTCACAACCTTAGGGAGCTACGAACAGGCACATGTATTCTCTTCCAAGTCAGGAGGCTGTGCAGCTTTTCTCTCAAATTTCAATACAAAGTCAGCTACAAAAGTGACTTTCAATAACATGAACTTTCACCTCCCCCCTTGGTCCATCAGCATCCTTCCAGATTGCAAAAATGTTGCATTCAACACTGCCCGAGTGGGAGTTCAGACATCCCAAACACAACTTTTGCGCACTAACTCTGACTTGCACTCGTGGGGAATCTTCAACGAAGATGTTTCTTCAGTGGCTGGTGATACTACAATCACGGTCACTGGCCTCCTAGATCAGTTGAACATCACAAGAGACTCCAGTGATTATTTGTGGTACACAACCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

481

Amino Acids

54.02

Weight (kDa)

6.56

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 38 - 342 7.6e-124 Glycosyl hydrolases family 35
Glyco_hydro_42 PF02449 59 - 190 7.4e-06 Beta-galactosidase
GHD PF17834 365 - 421 7.5e-25 Beta-sandwich domain in beta galactosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 279, 935
AasI GACNNNNNNGTC 1 cut(s) 239
Acc16I TGCGCA 1 cut(s) 1295
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 759
AciI CCGC 2 cut(s) 814, 1058
AclWI GGATC 2 cut(s) 1055, 1068
AcoI YGGCCR 1 cut(s) 1000
AcsI RAATTY 4 cut(s) 382, 470, 791, 1144
AcuI CTGAAG 3 cut(s) 415, 428, 1329
AdeI CACNNNGTG 2 cut(s) 527, 759
AfaI GTAC 4 cut(s) 172, 643, 890, 1430
AfiI CCNNNNNNNGG 5 cut(s) 269, 759, 771, 998, 1009
AflIII ACRYGT 2 cut(s) 885, 1099
AgsI TTSAA 6 cut(s) 824, 1150, 1180, 1249, 1330, 1396
AjnI CCWGG 4 cut(s) 268, 418, 611, 1436
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
Alw26I GTCTC 2 cut(s) 127, 1401
AlwI GGATC 2 cut(s) 1055, 1068
AlwNI CAGNNNCTG 1 cut(s) 1352
Ama87I CYCGRG 1 cut(s) 1257
AoxI GGCC 7 cut(s) 204, 529, 799, 815, 925, 1000, 1378
ApeKI GCWGC 4 cut(s) 42, 45, 617, 1130
ApoI RAATTY 4 cut(s) 382, 470, 791, 1144
Asp718I GGTACC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 1296
AspS9I GGNCC 7 cut(s) 359, 530, 649, 762, 800, 926, 1209
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 3 cut(s) 88, 1187, 1367
AvaI CYCGRG 1 cut(s) 1257
AvaII GGWCC 4 cut(s) 359, 649, 762, 1209
AxyI CCTNAGG 1 cut(s) 1078
BaeI ACNNNNGTAYC 2 cut(s) 633, 666
BalI TGGCCA 1 cut(s) 1002
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 180, 212
BauI CACGAG 1 cut(s) 1315
BbsI GAAGAC 2 cut(s) 51, 235
BbvI GCAGC 4 cut(s) 29, 32, 604, 1142
BccI CCATC 5 cut(s) 116, 206, 619, 971, 1220
BceAI ACGGC 1 cut(s) 991
BciT130I CCWGG 4 cut(s) 270, 420, 613, 1438
BclI TGATCA 1 cut(s) 981
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 127, 1401
BfaI CTAG 1 cut(s) 1385
BisI GCNGC 5 cut(s) 43, 46, 618, 815, 1131
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 5 cut(s) 44, 47, 619, 816, 1132
BmcAI AGTACT 1 cut(s) 172
Bme1390I CCNGG 5 cut(s) 270, 420, 613, 646, 1438
Bme18I GGWCC 4 cut(s) 359, 649, 762, 1209
BmeT110I CYCGRG 1 cut(s) 1257
BmgT120I GGNCC 7 cut(s) 359, 530, 649, 762, 800, 926, 1209
BmiI GGNNCC 8 cut(s) 151, 532, 643, 650, 651, 868, 901, 1062
BmrFI CCNGG 5 cut(s) 270, 420, 613, 646, 1438
BmrI ACTGGG 1 cut(s) 683
BmsI GCATC 4 cut(s) 214, 667, 946, 1227
BmuI ACTGGG 1 cut(s) 683
BpiI GAAGAC 2 cut(s) 51, 235
BpmI CTGGAG 2 cut(s) 942, 1396
Bpu1102I GCTNAGC 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 646
BsaJI CCNNGG 5 cut(s) 612, 645, 653, 892, 1205
Bsc4I CCNNNNNNNGG 5 cut(s) 269, 759, 771, 998, 1009
Bse1I ACTGG 4 cut(s) 398, 689, 1381, 1413
Bse21I CCTNAGG 1 cut(s) 1078
Bse3DI GCAATG 3 cut(s) 94, 468, 712
BseBI CCWGG 4 cut(s) 270, 420, 613, 1438
BseDI CCNNGG 5 cut(s) 612, 645, 653, 892, 1205
BseGI GGATG 4 cut(s) 229, 852, 1218, 1274
BseLI CCNNNNNNNGG 5 cut(s) 269, 759, 771, 998, 1009
BseMI GCAATG 3 cut(s) 94, 468, 712
BseMII CTCAG 3 cut(s) 30, 168, 560
BseNI ACTGG 4 cut(s) 398, 689, 1381, 1413
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 4 cut(s) 29, 32, 604, 1142
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 1149
BshFI GGCC 7 cut(s) 206, 531, 801, 817, 927, 1002, 1380
BshNI GGYRCC 1 cut(s) 641
BsiHKCI CYCGRG 1 cut(s) 1257
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 5 cut(s) 269, 759, 771, 998, 1009
BsmAI GTCTC 2 cut(s) 127, 1401
BsmFI GGGAC 1 cut(s) 635
BsmI GAATGC 2 cut(s) 1060, 1244
BsnI GGCC 7 cut(s) 206, 531, 801, 817, 927, 1002, 1380
BsoBI CYCGRG 1 cut(s) 1257
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 981, 1060, 1387
Bsp1720I GCTNAGC 1 cut(s) 16
Bsp19I CCATGG 2 cut(s) 653, 892
BspACI CCGC 2 cut(s) 814, 1058
BspANI GGCC 7 cut(s) 206, 531, 801, 817, 927, 1002, 1380
BspCNI CTCAG 3 cut(s) 29, 169, 559
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 8 cut(s) 151, 532, 643, 650, 651, 868, 901, 1062
BspPI GGATC 2 cut(s) 1055, 1068
BspT107I GGYRCC 1 cut(s) 641
BsrDI GCAATG 3 cut(s) 94, 468, 712
BsrI ACTGG 4 cut(s) 398, 689, 1381, 1413
BssECI CCNNGG 5 cut(s) 612, 645, 653, 892, 1205
BssMI GATC 3 cut(s) 981, 1060, 1387
BssSI CACGAG 1 cut(s) 1315
BssT1I CCWWGG 3 cut(s) 653, 892, 1205
Bst2BI CACGAG 1 cut(s) 1315
Bst2UI CCWGG 4 cut(s) 270, 420, 613, 1438
Bst4CI ACNGT 3 cut(s) 322, 1069, 1372
Bst6I CTCTTC 2 cut(s) 146, 1114
BstDEI CTNAG 5 cut(s) 16, 177, 546, 993, 1078
BstDSI CCRYGG 2 cut(s) 653, 892
BstF5I GGATG 4 cut(s) 229, 852, 1218, 1274
BstHHI GCGC 1 cut(s) 1296
BstKTI GATC 3 cut(s) 984, 1063, 1390
BstMAI GTCTC 2 cut(s) 127, 1401
BstMBI GATC 3 cut(s) 981, 1060, 1387
BstMWI GCNNNNNNNGC 1 cut(s) 626
BstNI CCWGG 4 cut(s) 270, 420, 613, 1438
BstNSI RCATGY 2 cut(s) 889, 1103
BstSCI CCNGG 5 cut(s) 268, 418, 611, 644, 1436
BstV1I GCAGC 4 cut(s) 29, 32, 604, 1142
BstV2I GAAGAC 2 cut(s) 51, 235
BstX2I RGATCY 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 1060
Bsu36I CCTNAGG 1 cut(s) 1078
BsuRI GGCC 7 cut(s) 206, 531, 801, 817, 927, 1002, 1380
BtgI CCRYGG 2 cut(s) 653, 892
BtsCI GGATG 4 cut(s) 229, 852, 1218, 1274
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 5 cut(s) 696, 1251, 1353, 1374, 1420
CaiI CAGNNNCTG 1 cut(s) 1352
CciI TCATGA 1 cut(s) 256
CfoI GCGC 1 cut(s) 1296
Cfr13I GGNCC 7 cut(s) 359, 530, 649, 762, 800, 926, 1209
CsiI ACCWGGT 1 cut(s) 1436
Csp6I GTAC 4 cut(s) 171, 642, 889, 1429
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 6 cut(s) 257, 654, 886, 893, 1100, 1186
CviQI GTAC 4 cut(s) 171, 642, 889, 1429
DdeI CTNAG 5 cut(s) 16, 177, 546, 993, 1078
DpnI GATC 3 cut(s) 983, 1062, 1389
DpnII GATC 3 cut(s) 981, 1060, 1387
DraIII CACNNNGTG 2 cut(s) 527, 759
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 1000
Eam1104I CTCTTC 2 cut(s) 146, 1114
EarI CTCTTC 2 cut(s) 146, 1114
Eco130I CCWWGG 3 cut(s) 653, 892, 1205
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 4 cut(s) 359, 649, 762, 1209
Eco57I CTGAAG 3 cut(s) 415, 428, 1329
Eco81I CCTNAGG 1 cut(s) 1078
Eco88I CYCGRG 1 cut(s) 1257
EcoO109I RGGNCCY 2 cut(s) 649, 926
EcoRII CCWGG 4 cut(s) 268, 418, 611, 1436
EcoT14I CCWWGG 3 cut(s) 653, 892, 1205
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 339
ErhI CCWWGG 3 cut(s) 653, 892, 1205
FaeI CATG 6 cut(s) 260, 657, 889, 896, 1103, 1189
FaqI GGGAC 1 cut(s) 635
FatI CATG 6 cut(s) 256, 653, 885, 892, 1099, 1185
FbaI TGATCA 1 cut(s) 981
Fnu4HI GCNGC 5 cut(s) 43, 46, 618, 815, 1131
FokI GGATG 4 cut(s) 236, 839, 1205, 1261
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 5 cut(s) 43, 46, 618, 815, 1131
FspBI CTAG 1 cut(s) 1385
FspI TGCGCA 1 cut(s) 1295
GlaI GCGC 1 cut(s) 1295
GluI GCNGC 5 cut(s) 43, 46, 618, 815, 1131
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 2 cut(s) 942, 1396
HaeIII GGCC 7 cut(s) 206, 531, 801, 817, 927, 1002, 1380
HapII CCGG 1 cut(s) 645
HhaI GCGC 1 cut(s) 1296
Hin1II CATG 6 cut(s) 260, 657, 889, 896, 1103, 1189
Hin6I GCGC 1 cut(s) 1294
HinP1I GCGC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 5 cut(s) 250, 518, 849, 1323, 1409
HpaII CCGG 1 cut(s) 645
HphI GGTGA 3 cut(s) 88, 1187, 1367
Hpy166II GTNNAC 4 cut(s) 325, 762, 786, 1431
Hpy188I TCNGA 6 cut(s) 354, 376, 434, 549, 1272, 1306
Hpy188III TCNNGA 5 cut(s) 176, 247, 257, 1119, 1226
Hpy8I GTNNAC 4 cut(s) 325, 762, 786, 1431
Hpy99I CGWCG 1 cut(s) 971
HpyAV CCTTC 6 cut(s) 100, 182, 196, 273, 880, 1232
HpyCH4III ACNGT 3 cut(s) 322, 1069, 1372
HpyF10VI GCNNNNNNNGC 1 cut(s) 626
HpyF3I CTNAG 5 cut(s) 16, 177, 546, 993, 1078
Hsp92II CATG 6 cut(s) 260, 657, 889, 896, 1103, 1189
HspAI GCGC 1 cut(s) 1294
KflI GGGWCCC 1 cut(s) 649
KpnI GGTACC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 3 cut(s) 981, 1060, 1387
LmnI GCTCC 4 cut(s) 155, 872, 964, 1083
Lsp1109I GCAGC 4 cut(s) 29, 32, 604, 1142
LweI GCATC 4 cut(s) 214, 667, 946, 1227
MabI ACCWGGT 1 cut(s) 1436
MaeI CTAG 1 cut(s) 1385
MaeIII GTNAC 5 cut(s) 76, 519, 1069, 1171, 1372
MalI GATC 3 cut(s) 983, 1062, 1389
MboI GATC 3 cut(s) 981, 1060, 1387
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 1002
MluCI AATT 9 cut(s) 274, 280, 382, 470, 491, 791, 804, 877, 1144
MluNI TGGCCA 1 cut(s) 1002
MlyI GAGTC 2 cut(s) 527, 1403
MmeI TCCRAC 1 cut(s) 613
Mox20I TGGCCA 1 cut(s) 1002
Mph1103I ATGCAT 1 cut(s) 604
MscI TGGCCA 1 cut(s) 1002
MseI TTAA 2 cut(s) 453, 1007
Msp20I TGGCCA 1 cut(s) 1002
MspA1I CMGCKG 1 cut(s) 814
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 5 cut(s) 270, 420, 613, 646, 1438
MunI CAATTG 1 cut(s) 491
Mva1269I GAATGC 2 cut(s) 1060, 1244
MvaI CCWGG 4 cut(s) 270, 420, 613, 1438
MwoI GCNNNNNNNGC 1 cut(s) 626
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 2 cut(s) 653, 892
NdeII GATC 3 cut(s) 981, 1060, 1387
NlaIII CATG 6 cut(s) 260, 657, 889, 896, 1103, 1189
NlaIV GGNNCC 8 cut(s) 151, 532, 643, 650, 651, 868, 901, 1062
NmuCI GTSAC 5 cut(s) 76, 519, 1069, 1171, 1372
NsbI TGCGCA 1 cut(s) 1295
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 2 cut(s) 889, 1103
PagI TCATGA 1 cut(s) 256
PciI ACATGT 2 cut(s) 885, 1099
PctI GAATGC 2 cut(s) 1060, 1244
PfeI GAWTC 3 cut(s) 250, 849, 1323
PflMI CCANNNNNTGG 1 cut(s) 759
PkrI GCNGC 5 cut(s) 44, 47, 619, 816, 1132
PleI GAGTC 2 cut(s) 526, 1403
PpsI GAGTC 2 cut(s) 526, 1403
PpuMI RGGWCCY 1 cut(s) 649
PscI ACATGT 2 cut(s) 885, 1099
PsiI TTATAA 2 cut(s) 279, 935
Psp5II RGGWCCY 1 cut(s) 649
Psp6I CCWGG 4 cut(s) 268, 418, 611, 1436
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 4 cut(s) 268, 418, 611, 1436
PspN4I GGNNCC 8 cut(s) 151, 532, 643, 650, 651, 868, 901, 1062
PspPI GGNCC 7 cut(s) 359, 530, 649, 762, 800, 926, 1209
PspPPI RGGWCCY 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 1352
PsuI RGATCY 1 cut(s) 1060
RsaI GTAC 4 cut(s) 172, 643, 890, 1430
RsaNI GTAC 4 cut(s) 171, 642, 889, 1429
SaqAI TTAA 2 cut(s) 453, 1007
SatI GCNGC 5 cut(s) 43, 46, 618, 815, 1131
Sau3AI GATC 3 cut(s) 981, 1060, 1387
Sau96I GGNCC 7 cut(s) 359, 530, 649, 762, 800, 926, 1209
ScaI AGTACT 1 cut(s) 172
SchI GAGTC 2 cut(s) 527, 1403
ScrFI CCNGG 5 cut(s) 270, 420, 613, 646, 1438
SduI GDGCHC 1 cut(s) 339
SexAI ACCWGGT 1 cut(s) 1436
SfaNI GCATC 4 cut(s) 214, 667, 946, 1227
SinI GGWCC 4 cut(s) 359, 649, 762, 1209
Sse9I AATT 9 cut(s) 274, 280, 382, 470, 491, 791, 804, 877, 1144
SsiI CCGC 2 cut(s) 814, 1058
SspMI CTAG 1 cut(s) 1385
StyD4I CCNGG 5 cut(s) 268, 418, 611, 644, 1436
StyI CCWWGG 3 cut(s) 653, 892, 1205
TaaI ACNGT 3 cut(s) 322, 1069, 1372
TaqI TCGA 2 cut(s) 285, 966
TaqII GACCGA 1 cut(s) 779
TasI AATT 9 cut(s) 274, 280, 382, 470, 491, 791, 804, 877, 1144
TatI WGTACW 1 cut(s) 170
TauI GCSGC 1 cut(s) 817
TfiI GAWTC 3 cut(s) 250, 849, 1323
Tru1I TTAA 2 cut(s) 453, 1007
Tru9I TTAA 2 cut(s) 453, 1007
TscAI CASTG 5 cut(s) 696, 1258, 1353, 1381, 1420
TseFI GTSAC 5 cut(s) 76, 519, 1069, 1171, 1372
TseI GCWGC 4 cut(s) 42, 45, 617, 1130
Tsp45I GTSAC 5 cut(s) 76, 519, 1069, 1171, 1372
TspDTI ATGAA 8 cut(s) 245, 273, 301, 335, 512, 841, 862, 1202
TspRI CASTG 5 cut(s) 696, 1258, 1353, 1381, 1420
Van91I CCANNNNNTGG 1 cut(s) 759
VpaK11BI GGWCC 4 cut(s) 359, 649, 762, 1209
XapI RAATTY 4 cut(s) 382, 470, 791, 1144
XceI RCATGY 2 cut(s) 889, 1103
XspI CTAG 1 cut(s) 1385
ZrmI AGTACT 1 cut(s) 172
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.