Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001965

Physical Location & Seq

Genomic Coordinates Forward (+)

2990396 .. 2990983

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0024500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGGTCTATGATTGATACGTTGTCTACTAAGGAGCAAGGCTTGTTTTGCATTCCTTTATGGGTCGTCTGGGCTGAAAGAAATAAGGTCTTGTGGCAGGGGTCTGTGCTTAATCCAGCTTACTTGGCTCAGTGGGTTGGGCAATATTTGGAAGTTTTCCAAAAATATCATTACAAGCCTAGTGTGAAGCAGAAGCGTCTGAAGACAAAATGGGAATGCCCTCCAAGTGGGAGGCTCAAAATTAATGTTGATGGGGCCTTTCGTATTGCGAATAATTGTGGAGGTATTGGGGTAGTCGTTAGAAATGATGCAGGTGTGGGAGTCGCAGCTTTAGCTAGGCCTCTTTTACATGCTCACTCCGCTTTGCATATAGAGGTTGAAGCTTGTAGAGCGGGTCTTTTACTTGGTATCCACCAAGGTTGGACGTATGTTGATATTGAAAGTGACTCTATCCTATTGATTACTGCCCTGAGTAGGGATGAGGAGGATTTGTCCGAGGTGGGTCGTGTCTTGGAAGATTGTAAAGCTTACATGACTGTTTTCAGTCTATCCGGGTTCGACACATATATAGAGAAGCAAATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

195

Amino Acids

21.91

Weight (kDa)

6.51

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	82 - 182	3.3e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36360 AT4G36360
fragaria_vesca	FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_2g09820 FvH4_2g09820
malus_domestica	MD02G1137500.v1.1 MD10G1067800.v1.1 MD15G1251100.v1.1
prunus_persica	Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.8G089500_v2.0.a1 Prupe.8G089500_v2.0.a1
pyrus_communis	pycom02g10880 pycom10g05360 pycom15g22140
rosa_chinensis	RchiOBHm_Chr2g0100171 RchiOBHm_Chr6g0266171
rosa_laevigata	RLG00000014106 RLG00000014109 RLG00000016943
rosa_multiflora	Rmu_sc0002547.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435340 Rroxscaffold_2G00142500 Rroxscaffold_7G00201780 Rroxscaffold_7G00201840
rosa_rugosa	Rorug02G0086200 Rorug06G0024500 Rorug06G0024900 Rorug06G0025000
rosa_samantha	Rh2AG135300 Rh2CG140500 Rh2DG140700 Rh6BG145900 Rh6CG142300 Rh6DG130400
rosa_wichuraiana	Rw2G010560 Rw6G012540 Rw6G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	2 cut(s)	360, 392
AcuI	CTGAAG	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	227, 474, 475
AgsI	TTSAA	2 cut(s)	380, 440
AluBI	AGCT	5 cut(s)	119, 329, 335, 383, 527
AluI	AGCT	5 cut(s)	119, 329, 335, 383, 527
AoxI	GGCC	2 cut(s)	255, 338
ApeKI	GCWGC	1 cut(s)	326
AseI	ATTAAT	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	553
BfaI	CTAG	2 cut(s)	180, 336
BfuAI	ACCTGC	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	415, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 474, 475
BseDI	CCNNGG	2 cut(s)	415, 495
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	227, 474, 475
BseMII	CTCAG	2 cut(s)	143, 461
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	2 cut(s)	257, 340
BsiSI	CCGG	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	227, 474, 475
BsmI	GAATGC	2 cut(s)	51, 221
BsnI	GGCC	2 cut(s)	257, 340
BspACI	CCGC	2 cut(s)	360, 392
BspANI	GGCC	2 cut(s)	257, 340
BspCNI	CTCAG	2 cut(s)	142, 462
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	415, 495
BssT1I	CCWWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	538
BstDEI	CTNAG	3 cut(s)	30, 129, 470
BstF5I	GGATG	1 cut(s)	484
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 125, 332, 359, 389
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	257, 340
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	185
CspCI	CAANNNNNGTGG	2 cut(s)	401, 436
CviAII	CATG	2 cut(s)	350, 532
DdeI	CTNAG	3 cut(s)	30, 129, 470
Eco130I	CCWWGG	1 cut(s)	415
Eco147I	AGGCCT	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	353, 535
FatI	CATG	2 cut(s)	349, 531
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	180, 336
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	257, 340
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	353, 535
HindIII	AAGCTT	2 cut(s)	381, 525
HinfI	GANTC	2 cut(s)	321, 446
HpaII	CCGG	1 cut(s)	552
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	201, 496
Hpy8I	GTNNAC	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	2 cut(s)	20, 425
HpyCH4V	TGCA	3 cut(s)	51, 311, 367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 125, 332, 359, 389
HpyF3I	CTNAG	3 cut(s)	30, 129, 470
HpySE526I	ACGT	2 cut(s)	20, 425
Hsp92II	CATG	2 cut(s)	353, 535
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	55, 83, 129, 297, 482, 565
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	180, 336
MaeII	ACGT	2 cut(s)	20, 425
MaeIII	GTNAC	1 cut(s)	443
MbiI	CCGCTC	1 cut(s)	392
MboII	GAAGA	2 cut(s)	214, 527
MluCI	AATT	2 cut(s)	240, 274
MlyI	GAGTC	2 cut(s)	330, 440
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	225, 231, 275, 351, 367, 475, 478, 490
MseI	TTAA	2 cut(s)	111, 243
MspI	CCGG	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	2 cut(s)	51, 221
MwoI	GCNNNNNNNGC	5 cut(s)	48, 125, 332, 359, 389
NciI	CCSGG	1 cut(s)	553
NlaIII	CATG	2 cut(s)	353, 535
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	340
PctI	GAATGC	2 cut(s)	51, 221
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	329, 440
PpsI	GAGTC	2 cut(s)	329, 440
PshBI	ATTAAT	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	111, 243
SatI	GCNGC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	2 cut(s)	330, 440
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	1 cut(s)	298
Sse9I	AATT	2 cut(s)	240, 274
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	360, 392
SspI	AATATT	1 cut(s)	146
SspMI	CTAG	2 cut(s)	180, 336
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	551
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	2 cut(s)	23, 428
TaqI	TCGA	1 cut(s)	558
TasI	AATT	2 cut(s)	240, 274
Tru1I	TTAA	2 cut(s)	111, 243
Tru9I	TTAA	2 cut(s)	111, 243
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	443
TspRI	CASTG	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	243
XceI	RCATGY	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	2 cut(s)	180, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.