Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001965

Physical Location & Seq

Genomic Coordinates Forward (+)

6877786 .. 6878543

Gene Structure 758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCTTCAAGCTCAGCAGTTACAATGGCTATGCCATTGCCCAATGCCACCACCCAAAAGAGGGTGGTTCAATCCTCAGAGGCCTTCTACAAGCCACTACCCCTCAGGCCCTCAAAGGCTGTGTCCTCGCCATCAAGATCAAGTGGAAGACTTGAGGTCAGGGCTTCCCTGAAGGAGAAGGCCGTCACCGCAATCACCGCCGCCGCGCTCACGGCCTCGATGGTGGTCCCGGACGTGGCGGAAGCCGCGTCTGGAGTCTCTCCGTCGCTCAAGAACTTCTTACTCAGCATTGCTGCCGGCGGCACTGTACTTATTGTGATTATTGGAGCTGTAATCGGAGTGTCCAATTTCGACCCTGTCAAGAGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

123

Amino Acids

12.52

Weight (kDa)

10.43

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbX	PF06596	86 - 122	7e-16	Photosystem II reaction centre X protein (PsbX)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36360 AT4G36360
fragaria_vesca	FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_2g09820 FvH4_2g09820
malus_domestica	MD02G1137500.v1.1 MD10G1067800.v1.1 MD15G1251100.v1.1
prunus_persica	Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.8G089500_v2.0.a1 Prupe.8G089500_v2.0.a1
pyrus_communis	pycom02g10880 pycom10g05360 pycom15g22140
rosa_chinensis	RchiOBHm_Chr2g0100171 RchiOBHm_Chr6g0266171
rosa_laevigata	RLG00000014106 RLG00000014109 RLG00000016943
rosa_multiflora	Rmu_sc0002547.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435340 Rroxscaffold_2G00142500 Rroxscaffold_7G00201780 Rroxscaffold_7G00201840
rosa_rugosa	Rorug02G0086200 Rorug06G0024500 Rorug06G0024900 Rorug06G0025000
rosa_samantha	Rh2AG135300 Rh2CG140500 Rh2DG140700 Rh6BG145900 Rh6CG142300 Rh6DG130400
rosa_wichuraiana	Rw2G010560 Rw6G012540 Rw6G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	206, 248
AciI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
AgsI	TTSAA	2 cut(s)	9, 71
AhdI	GACNNNNNGTC	1 cut(s)	155
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	2 cut(s)	12, 329
AluI	AGCT	2 cut(s)	12, 329
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	4 cut(s)	81, 107, 180, 213
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	108, 226
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	178, 187
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	139, 214
BceAI	ACGGC	2 cut(s)	167, 228
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	262
BisI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	5 cut(s)	202, 205, 247, 295, 302
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	108, 226
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	13
BpuEI	CTTGAG	2 cut(s)	173, 254
BpuMI	CCSGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 61, 235
Bse118I	RCCGGY	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	35, 288
BseLI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
BseMI	GCAATG	2 cut(s)	35, 288
BseMII	CTCAG	4 cut(s)	27, 90, 118, 298
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	2 cut(s)	206, 248
BshFI	GGCC	4 cut(s)	83, 109, 182, 215
BsiSI	CCGG	2 cut(s)	230, 297
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	3 cut(s)	60, 61, 235
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	83, 109, 182, 215
Bsp143I	GATC	1 cut(s)	137
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
BspANI	GGCC	4 cut(s)	83, 109, 182, 215
BspCNI	CTCAG	4 cut(s)	26, 89, 117, 297
BspFNI	CGCG	2 cut(s)	206, 248
BspLI	GGNNCC	1 cut(s)	228
BsrDI	GCAATG	2 cut(s)	35, 288
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	4 cut(s)	13, 76, 104, 284
BstFNI	CGCG	2 cut(s)	206, 248
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	2 cut(s)	206, 248
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	83, 109, 182, 215
BtrI	CACGTC	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	208
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	108, 226
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	308
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	4 cut(s)	13, 76, 104, 284
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DriI	GACNNNNNGTC	1 cut(s)	155
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	108
FaiI	YATR	1 cut(s)	32
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	212
Fnu4HI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
Fsp4HI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	4 cut(s)	83, 109, 182, 215
HapII	CCGG	2 cut(s)	230, 297
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	208
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	2 cut(s)	230, 297
HphI	GGTGA	2 cut(s)	178, 187
Hpy188I	TCNGA	2 cut(s)	79, 338
Hpy188III	TCNNGA	4 cut(s)	135, 252, 271, 361
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	94, 166, 172
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
HpyF3I	CTNAG	4 cut(s)	13, 76, 104, 284
HpySE526I	ACGT	1 cut(s)	234
HspAI	GCGC	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	6 cut(s)	91, 145, 182, 237, 243, 310
Lsp1109I	GCAGC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	19, 184
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	159
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	54, 73, 85, 113, 121, 136, 148, 226, 357
MroNI	GCCGGC	1 cut(s)	296
MspI	CCGG	2 cut(s)	230, 297
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	206, 248
MwoI	GCNNNNNNNGC	4 cut(s)	188, 197, 212, 245
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	296
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	83
PdiI	GCCGGC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	202, 205, 247, 295, 302
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	108, 226
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SatI	GCNGC	5 cut(s)	201, 204, 246, 294, 301
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	2 cut(s)	108, 226
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	14, 159, 237, 331
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	152, 269
SmoI	CTYRAG	2 cut(s)	152, 269
Sse9I	AATT	1 cut(s)	346
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	7 cut(s)	189, 198, 201, 204, 239, 246, 300
StuI	AGGCCT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	218, 351
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	4 cut(s)	203, 206, 248, 303
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.