Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001965

Physical Location & Seq

Genomic Coordinates Reverse (-)

3095788 .. 3096672

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCGTATCTCAAGTTTCTGGTTCTTGAAGGTTGTATAAGATTGTATGAGGTTGACCCGACAATTGAAGTGCTTGAAAGACTTACTGTGCTGAACTTGAAAGATTGCAAGAATCTTGTGCGACTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAAGATCTCAATCTTTCTGGTTGCTTAGAGCTTGAAAAATTGCCGGATGAGTTGGGTCATGTTGCCTGTTTGGAGAAGCTTGATGTCAGTGGAAGTGGCATAAGAGAACTACCCTCCTCTATTGGTCTTTTGAAAAACCTCAAAGAATTCTCTCTTGCTGGGTGTAAAGCACAGTCACCTAATTCATGGAATATGGTCTTCCTCCTTTTTCAGTTATTGCGAAAAAGAAGTCACATTCCAGCGGGATTGTCGCTGCCTTGTTTGACGGGTTTGCATTCATTAATCAAACTGGATCTAAGTGACTGCAATCTTTCTGAATTGCCCAGTGATTTTGGATGCTTGTCTTCATTAAGAGAATTAGATCTCAGCAGAAATCAATTCAGTAGACTACCCGAGAGCATCGGCCAACTCTCTAGACTTTACTATCTTTGGTTGAATCGGTGTCGTAAGCTTCAGATATTACCAGAGCTTCCATCTTGTGTATGGAGTCAAGCATTTTCTGGCCATGAAGTATTTGAGTTTGTTGGTCCTGGAAATGAAATTCCAGAGTGGTACAGTCACCGAAGTCTACTATCTTTGGCCATGAAGTGTGGGGTCTTCGATAACCGCTCCCGCCTTCTGTTCTGTGGTCCATTGATTGCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0009505 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

267

Amino Acids

29.91

Weight (kDa)

7.49

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	20 - 106	8.1e-12	Leucine-rich repeat region
LRR_13	PF23286	25 - 208	9.4e-06	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	134 - 203	8.7e-10	Leucine-rich repeat region
LRR_8	PF13855	140 - 179	1.6e-06	Leucine rich repeat
LRR_4	PF12799	145 - 181	4e-06	Leucine Rich repeats (2 copies)
LRR_4	PF12799	168 - 210	9.5e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36360 AT4G36360
fragaria_vesca	FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_1g12350 FvH4_2g09820 FvH4_2g09820
malus_domestica	MD02G1137500.v1.1 MD10G1067800.v1.1 MD15G1251100.v1.1
prunus_persica	Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.7G163100_v2.0.a1 Prupe.8G089500_v2.0.a1 Prupe.8G089500_v2.0.a1
pyrus_communis	pycom02g10880 pycom10g05360 pycom15g22140
rosa_chinensis	RchiOBHm_Chr2g0100171 RchiOBHm_Chr6g0266171
rosa_laevigata	RLG00000014106 RLG00000014109 RLG00000016943
rosa_multiflora	Rmu_sc0002547.1_g000001
rosa_roxburghii	Rroxscaffold_174G00435340 Rroxscaffold_2G00142500 Rroxscaffold_7G00201780 Rroxscaffold_7G00201840
rosa_rugosa	Rorug02G0086200 Rorug06G0024500 Rorug06G0024900 Rorug06G0025000
rosa_samantha	Rh2AG135300 Rh2CG140500 Rh2DG140700 Rh6BG145900 Rh6CG142300 Rh6DG130400
rosa_wichuraiana	Rw2G010560 Rw6G012540 Rw6G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	765
AccI	GTMKAC	2 cut(s)	541, 724
AciI	CCGC	3 cut(s)	398, 763, 769
AclWI	GGATC	1 cut(s)	456
AcoI	YGGCCR	3 cut(s)	559, 658, 735
AcsI	RAATTY	2 cut(s)	302, 696
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	710
AgsI	TTSAA	7 cut(s)	29, 68, 77, 100, 191, 289, 592
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	4 cut(s)	187, 235, 607, 625
AluI	AGCT	4 cut(s)	187, 235, 607, 625
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	548
AoxI	GGCC	3 cut(s)	559, 658, 735
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	2 cut(s)	302, 696
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AseI	ATTAAT	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	683, 785
AsuHPI	GGTGA	2 cut(s)	324, 707
AvaI	CYCGRG	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	683, 785
BalI	TGGCCA	2 cut(s)	660, 737
BbsI	GAAGAC	3 cut(s)	346, 492, 745
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	637
BciT130I	CCWGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	570
BglII	AGATCT	2 cut(s)	160, 517
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	2 cut(s)	683, 785
BmeT110I	CYCGRG	1 cut(s)	548
BmgT120I	GGNCC	2 cut(s)	683, 785
BmrFI	CCNGG	1 cut(s)	687
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	482, 564
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	3 cut(s)	346, 492, 745
BsaBI	GATNNNNATC	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	450, 480
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	687
BseGI	GGATG	2 cut(s)	208, 497
BseJI	GATNNNNATC	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	2 cut(s)	450, 480
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	314
BshFI	GGCC	3 cut(s)	561, 660, 737
BsiHKCI	CYCGRG	1 cut(s)	548
BsiSI	CCGG	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	561, 660, 737
BsoBI	CYCGRG	1 cut(s)	548
Bsp143I	GATC	3 cut(s)	160, 448, 517
BspACI	CCGC	3 cut(s)	398, 763, 769
BspANI	GGCC	3 cut(s)	561, 660, 737
BspCNI	CTCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	765
BsrI	ACTGG	2 cut(s)	450, 480
BssMI	GATC	3 cut(s)	160, 448, 517
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	88, 330, 713
BstDEI	CTNAG	3 cut(s)	181, 452, 521
BstF5I	GGATG	2 cut(s)	208, 497
BstKTI	GATC	3 cut(s)	163, 451, 520
BstMBI	GATC	3 cut(s)	160, 448, 517
BstNI	CCWGG	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	685
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	3 cut(s)	346, 492, 745
BstX2I	RGATCY	3 cut(s)	160, 448, 517
BstYI	RGATCY	3 cut(s)	160, 448, 517
BsuRI	GGCC	3 cut(s)	561, 660, 737
BtsCI	GGATG	2 cut(s)	208, 497
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 250, 487
Cfr13I	GGNCC	2 cut(s)	683, 785
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	4 cut(s)	215, 342, 662, 739
CviJI	RGCY	8 cut(s)	144, 187, 235, 561, 607, 625, 660, 737
CviKI_1	RGCY	8 cut(s)	144, 187, 235, 561, 607, 625, 660, 737
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	3 cut(s)	181, 452, 521
DpnI	GATC	3 cut(s)	162, 450, 519
DpnII	GATC	3 cut(s)	160, 448, 517
EaeI	YGGCCR	3 cut(s)	559, 658, 735
Eco47I	GGWCC	2 cut(s)	683, 785
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	685
FaeI	CATG	4 cut(s)	218, 345, 665, 742
FaiI	YATR	9 cut(s)	38, 48, 216, 257, 343, 350, 640, 663, 740
FatI	CATG	4 cut(s)	214, 341, 661, 738
FauI	CCCGC	2 cut(s)	391, 776
FblI	GTMKAC	2 cut(s)	541, 724
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	2 cut(s)	215, 504
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	561, 660, 737
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	4 cut(s)	218, 345, 665, 742
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	233, 605
HinfI	GANTC	3 cut(s)	112, 592, 643
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	324, 707
Hpy166II	GTNNAC	3 cut(s)	55, 542, 725
Hpy188I	TCNGA	2 cut(s)	472, 612
Hpy188III	TCNNGA	3 cut(s)	26, 570, 701
Hpy8I	GTNNAC	3 cut(s)	55, 542, 725
HpyAV	CCTTC	2 cut(s)	23, 782
HpyCH4III	ACNGT	3 cut(s)	88, 330, 713
HpyCH4V	TGCA	3 cut(s)	108, 430, 462
HpyF3I	CTNAG	3 cut(s)	181, 452, 521
Hsp92II	CATG	4 cut(s)	218, 345, 665, 742
Kzo9I	GATC	3 cut(s)	160, 448, 517
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	482, 564
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	330, 386, 455, 713
MalI	GATC	3 cut(s)	162, 450, 519
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	3 cut(s)	160, 448, 517
MboII	GAAGA	3 cut(s)	346, 492, 745
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	160, 448, 517
MlsI	TGGCCA	2 cut(s)	660, 737
MluCI	AATT	8 cut(s)	63, 194, 302, 337, 473, 512, 533, 696
MluNI	TGGCCA	2 cut(s)	660, 737
MlyI	GAGTC	1 cut(s)	652
MnlI	CCTC	5 cut(s)	43, 280, 283, 305, 368
Mox20I	TGGCCA	2 cut(s)	660, 737
MscI	TGGCCA	2 cut(s)	660, 737
MseI	TTAA	3 cut(s)	146, 437, 506
Msp20I	TGGCCA	2 cut(s)	660, 737
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	687
NdeII	GATC	3 cut(s)	160, 448, 517
NlaIII	CATG	4 cut(s)	218, 345, 665, 742
NmuCI	GTSAC	4 cut(s)	330, 386, 455, 713
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	2 cut(s)	112, 592
PfoI	TCCNGGA	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	651
PpsI	GAGTC	1 cut(s)	651
PshBI	ATTAAT	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	685
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	683, 785
PsuI	RGATCY	3 cut(s)	160, 448, 517
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SaqAI	TTAA	3 cut(s)	146, 437, 506
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	3 cut(s)	160, 448, 517
Sau96I	GGNCC	2 cut(s)	683, 785
SchI	GAGTC	1 cut(s)	652
ScrFI	CCNGG	1 cut(s)	687
SetI	ASST	9 cut(s)	34, 54, 142, 189, 237, 297, 337, 609, 627
SfaNI	GCATC	2 cut(s)	482, 564
SinI	GGWCC	2 cut(s)	683, 785
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	8 cut(s)	63, 194, 302, 337, 473, 512, 533, 696
SsiI	CCGC	3 cut(s)	398, 763, 769
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	3 cut(s)	88, 330, 713
TaqI	TCGA	1 cut(s)	756
TasI	AATT	8 cut(s)	63, 194, 302, 337, 473, 512, 533, 696
TfiI	GAWTC	2 cut(s)	112, 592
Tru1I	TTAA	3 cut(s)	146, 437, 506
Tru9I	TTAA	3 cut(s)	146, 437, 506
TscAI	CASTG	3 cut(s)	139, 250, 487
TseFI	GTSAC	4 cut(s)	330, 386, 455, 713
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	4 cut(s)	330, 386, 455, 713
TspDTI	ATGAA	6 cut(s)	330, 423, 492, 678, 708, 755
TspRI	CASTG	3 cut(s)	139, 250, 487
VpaK11BI	GGWCC	2 cut(s)	683, 785
VspI	ATTAAT	1 cut(s)	437
XapI	RAATTY	2 cut(s)	302, 696
XbaI	TCTAGA	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	636
XmiI	GTMKAC	2 cut(s)	541, 724
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.