Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

11358906 .. 11360549

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAGAATGAGAATACTCCTAAAAGGACTCCTCACGGAAATAAAAATACTCCTAAGAGAGCTCGTCGAAAGTCAAAGGTTGAAGATACAATTAATTTGTCGAACAAATCATGTAACGGCTCTACTCAGTCCGCTTCTACTAGTGAGAAAGGTGGATCGATCACGATCAACATATCGAAAACTTGGGGAAGCTGTAACTCAGCGACTATCCAAATCGTTCAAGGAAAACCACTATCCAGACCGATCTATGAAGGAAAGTCTGGCCCAAGAACTAGGAATAATGGCTAAGCAGGTAAGCAAATGGTTTGAAAACGCTCGCCACTGTTTGAAAGTGAGTGTGGATAAGAGTGCTGCAGGAAATGGCACGCCCTTGCCTCAAACAAATGGAAAACAACTTGAACAAGATGGTACAACTTTTGGAGCTCAAAACAAGGAGTTACCCAGGACAGATGATCCTATGACAGGTTCCTTAAACAAAAGGCTATTACTCCAAACAATAGAAAGAGGGAGCGTCAATCAGATGATCTTGATCCAGAAAACGAGACACCTGAAACTAATAGAAAAGGTACCCGACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

10.17

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	62 - 106	3.1e-11	Homeodomain
Homeobox_KN	PF05920	76 - 106	3e-08	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
Acc65I	GGTACC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	565
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	3 cut(s)	162, 446, 523
AfaI	GTAC	2 cut(s)	409, 567
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	5 cut(s)	82, 220, 308, 328, 398
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	3 cut(s)	61, 191, 422
AluI	AGCT	3 cut(s)	61, 191, 422
Alw21I	GWGCWC	2 cut(s)	63, 424
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	3 cut(s)	162, 446, 523
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	2 cut(s)	63, 424
Bbv12I	GWGCWC	2 cut(s)	63, 424
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	535
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	140, 272
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	1 cut(s)	351
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	2 cut(s)	466, 567
BmrFI	CCNGG	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	157
BsaBI	GATNNNNATC	2 cut(s)	163, 527
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse8I	GATNNNNATC	2 cut(s)	163, 527
BseBI	CCWGG	1 cut(s)	442
BseCI	ATCGAT	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	440
BseJI	GATNNNNATC	2 cut(s)	163, 527
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	139, 212
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	263
BshNI	GGYRCC	1 cut(s)	565
BshVI	ATCGAT	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	63, 424
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	63, 424
Bsp143I	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	2 cut(s)	138, 211
BspDI	ATCGAT	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	466, 567
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	3 cut(s)	162, 446, 523
BspT107I	GGYRCC	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	316, 365
BstDEI	CTNAG	4 cut(s)	53, 125, 198, 285
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstKTI	GATC	7 cut(s)	157, 161, 167, 245, 454, 525, 531
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
BstNI	CCWGG	1 cut(s)	442
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	316, 365
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	157
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	408, 566
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	7 cut(s)	61, 119, 191, 263, 284, 422, 481
CviKI_1	RGCY	7 cut(s)	61, 119, 191, 263, 284, 422, 481
CviQI	GTAC	2 cut(s)	408, 566
DdeI	CTNAG	4 cut(s)	53, 125, 198, 285
DpnI	GATC	7 cut(s)	156, 160, 166, 244, 453, 524, 530
DpnII	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
Ecl136II	GAGCTC	2 cut(s)	61, 422
Eco24I	GRGCYC	2 cut(s)	63, 424
Eco53kI	GAGCTC	2 cut(s)	61, 422
EcoICRI	GAGCTC	2 cut(s)	61, 422
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	440
EcoT38I	GRGCYC	2 cut(s)	63, 424
FaeI	CATG	1 cut(s)	113
FaiI	YATR	5 cut(s)	111, 172, 248, 458, 577
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	2 cut(s)	63, 424
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	140, 272
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	499
Hin1II	CATG	1 cut(s)	113
HinfI	GANTC	1 cut(s)	27
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	4 cut(s)	162, 236, 526, 532
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	353
HpyF3I	CTNAG	4 cut(s)	53, 125, 198, 285
Hsp92II	CATG	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	569
Kzo9I	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
LmnI	GCTCC	2 cut(s)	419, 507
LpnPI	CCDG	9 cut(s)	245, 249, 275, 339, 427, 447, 454, 545, 560
Lsp1109I	GCAGC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	140, 272
MaeIII	GTNAC	3 cut(s)	112, 193, 435
MalI	GATC	7 cut(s)	156, 160, 166, 244, 453, 524, 530
MboI	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
MboII	GAAGA	1 cut(s)	94
MhlI	GDGCHC	2 cut(s)	63, 424
MluCI	AATT	2 cut(s)	89, 93
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	3 cut(s)	41, 384, 497
MseI	TTAA	2 cut(s)	92, 470
MspR9I	CCNGG	1 cut(s)	442
MvaI	CCWGG	1 cut(s)	442
NdeII	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	466, 567
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	92
Psp124BI	GAGCTC	2 cut(s)	63, 424
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	466, 567
PspPI	GGNCC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	409, 567
RsaNI	GTAC	2 cut(s)	408, 566
SacI	GAGCTC	2 cut(s)	63, 424
SaqAI	TTAA	2 cut(s)	92, 470
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	7 cut(s)	154, 158, 164, 242, 451, 522, 528
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	2 cut(s)	63, 424
SetI	ASST	9 cut(s)	63, 80, 153, 193, 294, 424, 466, 549, 567
SfcI	CTRYAG	1 cut(s)	351
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	2 cut(s)	89, 93
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	140, 272
SstI	GAGCTC	2 cut(s)	63, 424
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	323
TaqI	TCGA	4 cut(s)	66, 100, 157, 175
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	89, 93
Tru1I	TTAA	2 cut(s)	92, 470
Tru9I	TTAA	2 cut(s)	92, 470
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	459
XspI	CTAG	2 cut(s)	140, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.