pycom10g08860

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0009097
Physical Location & Seq
Forward (+)
11682718 .. 11684594
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 792 bp
ATGACGGCCGCTTTCCGCCGGAGCACCAACCTCACCCGCCTGTTACACAAGAACTCCATCACGGACCCGATCGCGGCCCCGACACTGCTCCAAACCCAAACCCAGACCCAGACCCCCTCCAAAGCCTACCTCCGCTTCCCTCAAGTCTTCCGCAAAGCCAGAGACTGCGACCTCTCCCCCTCCGTCTTCTCCTCCGCCTTCTCCTCCTCCAAGTCCTCCGTCGAAGCGCCGTCGGCTTCCAAGTTCGGGTTCGTGGGATGGTACCTGGGTATGATCCAGTGCCGCCCCATTTTGACCAAGAGTGTGACCGCGGCGCTCATTTACACCGCCGCCGATTTGTCCTCCCAGACATTAGCAAAATCATCCTTTTCCGAATCTTATGATCTTGTAAGGACAGCGCGCATGGCTGGCTATGGGATGCTGGTTTTGGGTCCGTCGCTGCATTTCTGGTTCAATTTCATGTCGAAAGCTTTACCGAAACGAGATGTGTTTTCGACATTGAAGAAAATGGCAATGGGGCAGCTGCTTTACGGACCTACAATGACGTGTGTTTTCTTCTCCTTGAATGCATGTCTACAAGGTGAAAATGGTGAAGAAATTGTTGCCCGCCTACAGCGAGACTTGTTCCCTACATTGTTAAACGGTGTTATGTACTGGCCAGTATGTGATTTTATCACATTCCGATTCATTCCTGTCCATTTACAGCCATTAGTGAGCAACGGATTTTCGTATCTGTGGACCATTTACATGACGTACATGGCAGGCTTGGAGAAAGCTGGCACAACGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

264

Amino Acids

29.32

Weight (kDa)

9.57

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 191 - 250 3.7e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccI GTMKAC 1 cut(s) 574
AccII CGCG 3 cut(s) 74, 311, 400
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 2 cut(s) 6, 656
AfaI GTAC 3 cut(s) 263, 653, 755
AfiI CCNNNNNNNGG 2 cut(s) 73, 246
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 3 cut(s) 454, 502, 565
AjiI CACGTC 1 cut(s) 546
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 470, 523, 776
AluI AGCT 3 cut(s) 470, 523, 776
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 2 cut(s) 156, 612
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 165
AoxI GGCC 3 cut(s) 6, 75, 656
ApeKI GCWGC 3 cut(s) 439, 520, 523
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 4 cut(s) 229, 316, 400, 402
AspS9I GGNCC 5 cut(s) 64, 76, 431, 533, 738
AsuHPI GGTGA 3 cut(s) 25, 593, 602
AvaII GGWCC 4 cut(s) 64, 431, 533, 738
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BalI TGGCCA 1 cut(s) 658
BanI GGYRCC 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 139, 178
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 426, 510, 532
BccI CCATC 2 cut(s) 65, 252
BceAI ACGGC 2 cut(s) 21, 214
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 156, 612
BfaI CTAG 1 cut(s) 790
BfmI CTRYAG 1 cut(s) 611
BfoI RGCGCY 2 cut(s) 230, 317
BisI GCNGC 8 cut(s) 9, 75, 283, 312, 330, 440, 521, 524
BlsI GCNGC 8 cut(s) 10, 76, 284, 313, 331, 441, 522, 525
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 4 cut(s) 64, 431, 533, 738
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 5 cut(s) 64, 76, 431, 533, 738
BmiI GGNNCC 4 cut(s) 66, 78, 263, 432
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 139, 178
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 265, 309
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 246
Bse1I ACTGG 3 cut(s) 277, 659, 659
Bse3DI GCAATG 1 cut(s) 519
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 265, 309
BseGI GGATG 3 cut(s) 263, 362, 423
BseLI CCNNNNNNNGG 2 cut(s) 73, 246
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 277, 659, 659
BsePI GCGCGC 1 cut(s) 398
BseRI GAGGAG 3 cut(s) 181, 193, 196
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 3 cut(s) 426, 510, 532
Bsh1236I CGCG 3 cut(s) 74, 311, 400
Bsh1285I CGRYCG 2 cut(s) 9, 72
BshFI GGCC 3 cut(s) 8, 77, 658
BshNI GGYRCC 1 cut(s) 261
BsiEI CGRYCG 2 cut(s) 9, 72
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 73, 246
BsmAI GTCTC 2 cut(s) 156, 612
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 3 cut(s) 8, 77, 658
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 69, 273, 382
BspANI GGCC 3 cut(s) 8, 77, 658
BspFNI CGCG 3 cut(s) 74, 311, 400
BspLI GGNNCC 4 cut(s) 66, 78, 263, 432
BspPI GGATC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 3 cut(s) 277, 659, 659
BssECI CCNNGG 2 cut(s) 265, 309
BssHII GCGCGC 1 cut(s) 398
BssMI GATC 3 cut(s) 69, 273, 382
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 644
BstC8I GCNNGC 5 cut(s) 400, 409, 607, 763, 778
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 263, 362, 423
BstFNI CGCG 3 cut(s) 74, 311, 400
BstH2I RGCGCY 2 cut(s) 230, 317
BstHHI GCGC 4 cut(s) 229, 316, 400, 402
BstKTI GATC 3 cut(s) 72, 276, 385
BstMAI GTCTC 2 cut(s) 156, 612
BstMBI GATC 3 cut(s) 69, 273, 382
BstMCI CGRYCG 2 cut(s) 9, 72
BstMWI GCNNNNNNNGC 3 cut(s) 233, 404, 408
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 573
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 611
BstUI CGCG 3 cut(s) 74, 311, 400
BstV1I GCAGC 3 cut(s) 426, 510, 532
BstV2I GAAGAC 2 cut(s) 139, 178
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 77, 658
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 3 cut(s) 263, 362, 423
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 83, 284
Cac8I GCNNGC 5 cut(s) 400, 409, 607, 763, 778
CaiI CAGNNNCTG 1 cut(s) 165
CfoI GCGC 4 cut(s) 229, 316, 400, 402
Cfr13I GGNCC 5 cut(s) 64, 76, 431, 533, 738
Cfr42I CCGCGG 1 cut(s) 312
Csp6I GTAC 3 cut(s) 262, 652, 754
CviAII CATG 5 cut(s) 403, 460, 570, 748, 757
CviQI GTAC 3 cut(s) 262, 652, 754
DpnI GATC 3 cut(s) 71, 275, 384
DpnII GATC 3 cut(s) 69, 273, 382
EaeI YGGCCR 2 cut(s) 6, 656
EagI CGGCCG 1 cut(s) 6
EciI GGCGGA 2 cut(s) 5, 184
EclXI CGGCCG 1 cut(s) 6
Eco47I GGWCC 4 cut(s) 64, 431, 533, 738
Eco52I CGGCCG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 571
FaeI CATG 5 cut(s) 406, 463, 573, 751, 760
FatI CATG 5 cut(s) 402, 459, 569, 747, 756
FauI CCCGC 2 cut(s) 44, 614
FblI GTMKAC 1 cut(s) 574
Fnu4HI GCNGC 8 cut(s) 9, 75, 283, 312, 330, 440, 521, 524
FokI GGATG 3 cut(s) 270, 349, 430
Fsp4HI GCNGC 8 cut(s) 9, 75, 283, 312, 330, 440, 521, 524
FspBI CTAG 1 cut(s) 790
GlaI GCGC 4 cut(s) 228, 315, 399, 401
GluI GCNGC 8 cut(s) 9, 75, 283, 312, 330, 440, 521, 524
HaeII RGCGCY 2 cut(s) 230, 317
HaeIII GGCC 3 cut(s) 8, 77, 658
HapII CCGG 1 cut(s) 19
HhaI GCGC 4 cut(s) 229, 316, 400, 402
Hin1II CATG 5 cut(s) 406, 463, 573, 751, 760
Hin6I GCGC 4 cut(s) 227, 314, 398, 400
HinP1I GCGC 4 cut(s) 227, 314, 398, 400
HindIII AAGCTT 1 cut(s) 468
HinfI GANTC 2 cut(s) 374, 684
HpaII CCGG 1 cut(s) 19
HphI GGTGA 3 cut(s) 25, 593, 602
Hpy166II GTNNAC 2 cut(s) 575, 738
Hpy188I TCNGA 2 cut(s) 373, 683
Hpy8I GTNNAC 2 cut(s) 575, 738
Hpy99I CGWCG 3 cut(s) 224, 235, 439
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 3 cut(s) 545, 752, 785
HpyCH4V TGCA 2 cut(s) 442, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 404, 408
HpySE526I ACGT 3 cut(s) 545, 752, 785
Hsp92II CATG 5 cut(s) 406, 463, 573, 751, 760
HspAI GCGC 4 cut(s) 227, 314, 398, 400
KpnI GGTACC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 312
Kzo9I GATC 3 cut(s) 69, 273, 382
LmnI GCTCC 2 cut(s) 21, 93
Lsp1109I GCAGC 3 cut(s) 426, 510, 532
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 790
MaeII ACGT 3 cut(s) 545, 752, 785
MaeIII GTNAC 2 cut(s) 42, 304
MalI GATC 3 cut(s) 71, 275, 384
MboI GATC 3 cut(s) 69, 273, 382
MboII GAAGA 5 cut(s) 139, 178, 514, 547, 605
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 2 cut(s) 454, 597
MluNI TGGCCA 1 cut(s) 658
Mox20I TGGCCA 1 cut(s) 658
Mph1103I ATGCAT 1 cut(s) 571
MscI TGGCCA 1 cut(s) 658
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 658
MspA1I CMGCKG 2 cut(s) 311, 523
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 3 cut(s) 74, 311, 400
MwoI GCNNNNNNNGC 3 cut(s) 233, 404, 408
NdeII GATC 3 cut(s) 69, 273, 382
NlaIII CATG 5 cut(s) 406, 463, 573, 751, 760
NlaIV GGNNCC 4 cut(s) 66, 78, 263, 432
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 1 cut(s) 573
PauI GCGCGC 1 cut(s) 398
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 374, 684
PkrI GCNGC 8 cut(s) 10, 76, 284, 313, 331, 441, 522, 525
Ple19I CGATCG 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 4 cut(s) 66, 78, 263, 432
PspPI GGNCC 5 cut(s) 64, 76, 431, 533, 738
PstNI CAGNNNCTG 1 cut(s) 165
PteI GCGCGC 1 cut(s) 398
PvuI CGATCG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 3 cut(s) 263, 653, 755
RsaNI GTAC 3 cut(s) 262, 652, 754
RseI CAYNNNNRTG 1 cut(s) 746
SacII CCGCGG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 8 cut(s) 9, 75, 283, 312, 330, 440, 521, 524
Sau3AI GATC 3 cut(s) 69, 273, 382
Sau96I GGNCC 5 cut(s) 64, 76, 431, 533, 738
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 611
Sfr303I CCGCGG 1 cut(s) 312
SgrBI CCGCGG 1 cut(s) 312
SinI GGWCC 4 cut(s) 64, 431, 533, 738
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 2 cut(s) 454, 597
SspMI CTAG 1 cut(s) 790
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 3 cut(s) 548, 755, 788
TaqI TCGA 3 cut(s) 222, 464, 494
TasI AATT 2 cut(s) 454, 597
TatI WGTACW 1 cut(s) 651
TauI GCSGC 5 cut(s) 11, 77, 285, 314, 332
TfiI GAWTC 2 cut(s) 374, 684
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 2 cut(s) 90, 284
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 439, 520, 523
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 448, 676
TspGWI ACGGA 6 cut(s) 77, 172, 208, 423, 546, 735
TspRI CASTG 2 cut(s) 90, 284
VpaK11BI GGWCC 4 cut(s) 64, 431, 533, 738
XceI RCATGY 1 cut(s) 573
XmiI GTMKAC 1 cut(s) 574
XspI CTAG 1 cut(s) 790
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.