pycom10g22030

Belongs to the beta-ketoacyl-ACP synthases family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003245
Physical Location & Seq
Reverse (-)
24535937 .. 24537130
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 606 bp
ATGATCGATCCAAAAACGGCTTCCAGGCCATGGGACAGAGATAGAGATGGCTTTGTTATTGGCGAAGGTGCTGGAGTATTGGTAATGGAGAGCTTGGAACATGCAACAAAACGAGGTGCTACAATTATTGCCGAGTACTTGGGAGGTGGTATTAACTGTGATGCTTATCATATGACTGATCCTAGAGCTGATGGGCTTGGTGTATCTACGTGCATACAGACATGCCTCGAAGATGCTGGTGTATCGCCCGAGGAGGTTAACTACATCAATGCGCATGCAACTTCTACCCTTGCTGGTGACCTCGCCGAGATAAATGCTATAAAGAAGGTGTTCACGAACACTAAAGATATCAAGATCAATGCAACTAAGTCTATGATCGGACACTGTCTTGGTGCTTCGGGGGGTTTGGAAGCTATTGCCGTCATCAAAGCCATAACAACTGGATGGCTGCATCCTTCCATAAACCAATTTAACCCAGAGCCTTCAGTGGAGTTTGACACTGTTCCCAATGTAAAGCAGCAGCATGAAGTGAATGTTGCCATATCGAATTCATTTGGATTTGGCGGACACAACTCCGTTGTGGCCTTCTCTCCTTTCAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212
Pfam Domains
Protein Families
Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

202

Amino Acids

21.34

Weight (kDa)

5.28

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ketoacyl-synt_C PF02801 44 - 155 4.6e-35 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 30
AciI CCGC 1 cut(s) 564
AclWI GGATC 2 cut(s) 2, 173
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 598
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 1 cut(s) 36
AluBI AGCT 3 cut(s) 93, 188, 413
AluI AGCT 3 cut(s) 93, 188, 413
AlwI GGATC 2 cut(s) 2, 173
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 26, 582
ApeKI GCWGC 3 cut(s) 448, 517, 520
ApoI RAATTY 1 cut(s) 547
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 248
BbvI GCAGC 3 cut(s) 435, 529, 532
BccI CCATC 3 cut(s) 41, 185, 438
BceAI ACGGC 2 cut(s) 33, 404
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 183
BisI GCNGC 3 cut(s) 449, 518, 521
BlsI GCNGC 3 cut(s) 450, 519, 522
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 3 cut(s) 151, 223, 460
BpmI CTGGAG 1 cut(s) 93
Bsa29I ATCGAT 1 cut(s) 6
BsaAI YACGTR 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 29, 249
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 445
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 29, 249
BseGI GGATG 2 cut(s) 449, 451
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 3 cut(s) 435, 529, 532
BshFI GGCC 2 cut(s) 28, 584
BshVI ATCGAT 1 cut(s) 6
BsiHKCI CYCGRG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 28, 584
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 5 cut(s) 3, 7, 178, 354, 375
Bsp19I CCATGG 1 cut(s) 29
BspACI CCGC 1 cut(s) 564
BspANI GGCC 2 cut(s) 28, 584
BspDI ATCGAT 1 cut(s) 6
BspPI GGATC 2 cut(s) 2, 173
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 29, 249
BssMI GATC 5 cut(s) 3, 7, 178, 354, 375
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 3 cut(s) 158, 386, 502
BstBAI YACGTR 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 296
BstF5I GGATG 2 cut(s) 449, 451
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 5 cut(s) 6, 10, 181, 357, 378
BstMBI GATC 5 cut(s) 3, 7, 178, 354, 375
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 3 cut(s) 104, 225, 278
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 435, 529, 532
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 2 cut(s) 28, 584
BsuTUI ATCGAT 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 2 cut(s) 449, 451
BtsIMutI CAGTG 3 cut(s) 382, 492, 498
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 6
Csp6I GTAC 1 cut(s) 136
CviAII CATG 5 cut(s) 30, 101, 222, 275, 524
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 366
DpnI GATC 5 cut(s) 5, 9, 180, 356, 377
DpnII GATC 5 cut(s) 3, 7, 178, 354, 375
EciI GGCGGA 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 29
Eco32I GATATC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 468
Eco88I CYCGRG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 5 cut(s) 33, 104, 225, 278, 527
FaqI GGGAC 1 cut(s) 47
FatI CATG 5 cut(s) 29, 100, 221, 274, 523
FauNDI CATATG 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 449, 518, 521
FokI GGATG 2 cut(s) 438, 456
Fsp4HI GCNGC 3 cut(s) 449, 518, 521
FspAI RTGCGCAY 1 cut(s) 273
FspBI CTAG 1 cut(s) 183
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 1 cut(s) 273
GluI GCNGC 3 cut(s) 449, 518, 521
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 2 cut(s) 28, 584
HhaI GCGC 1 cut(s) 274
Hin1II CATG 5 cut(s) 33, 104, 225, 278, 527
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaI GTTAAC 1 cut(s) 259
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 2 cut(s) 259, 333
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 2 cut(s) 334, 352
Hpy8I GTNNAC 2 cut(s) 259, 333
HpyAV CCTTC 5 cut(s) 59, 319, 465, 492, 595
HpyCH4III ACNGT 3 cut(s) 158, 386, 502
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 5 cut(s) 104, 213, 278, 362, 451
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 5 cut(s) 33, 104, 225, 278, 527
HspAI GCGC 1 cut(s) 272
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 5 cut(s) 3, 7, 178, 354, 375
LpnPI CCDG 7 cut(s) 10, 37, 57, 222, 279, 426, 489
Lsp1109I GCAGC 3 cut(s) 435, 529, 532
LweI GCATC 3 cut(s) 151, 223, 460
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 296
MalI GATC 5 cut(s) 5, 9, 180, 356, 377
MboI GATC 5 cut(s) 3, 7, 178, 354, 375
MboII GAAGA 1 cut(s) 242
MluCI AATT 3 cut(s) 123, 467, 547
MnlI CCTC 6 cut(s) 107, 137, 236, 244, 247, 311
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 3 cut(s) 153, 258, 471
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 171
NdeII GATC 5 cut(s) 3, 7, 178, 354, 375
NlaIII CATG 5 cut(s) 33, 104, 225, 278, 527
NmeAIII GCCGAG 2 cut(s) 157, 331
NmuCI GTSAC 1 cut(s) 296
NsbI TGCGCA 1 cut(s) 273
NspI RCATGY 3 cut(s) 104, 225, 278
PaeI GCATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 329
PflFI GACNNNGTC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 3 cut(s) 450, 519, 522
Ppu21I YACGTR 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 384
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 153, 258, 471
SatI GCNGC 3 cut(s) 449, 518, 521
Sau3AI GATC 5 cut(s) 3, 7, 178, 354, 375
ScaI AGTACT 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 25
SfaNI GCATC 3 cut(s) 151, 223, 460
SphI GCATGC 1 cut(s) 278
Sse9I AATT 3 cut(s) 123, 467, 547
SsiI CCGC 1 cut(s) 564
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 158, 386, 502
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 6, 228, 545
TasI AATT 3 cut(s) 123, 467, 547
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 3 cut(s) 153, 258, 471
Tru9I TTAA 3 cut(s) 153, 258, 471
TscAI CASTG 3 cut(s) 389, 492, 505
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 448, 517, 520
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 540, 540
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 3 cut(s) 389, 492, 505
Tth111I GACNNNGTC 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 30
XapI RAATTY 1 cut(s) 547
XceI RCATGY 3 cut(s) 104, 225, 278
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 1 cut(s) 183
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.