pycom11g05480

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003662
Physical Location & Seq
Forward (+)
4176266 .. 4178755
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGTCGAAGCAGGGTGAGGTCGTATGCGTCACCGGTGGAAGCGGCTGCATTGGATCGTGGCTCGTCCGTCTCCTCCTCCACCGTGATTACACCGTCCACGCCACCGTCAAGGATCTTAAGGACGAGGGCGAGACGAAGCATCTAGAAGCGTTAGTAGAGGGAGCAGAGTCGCGCCTCCGTCTCTTCCAGATTGACCTCCTCGACTACAACTCCATACTCGCCGCCGTCAATGGCTGCTCCGGCGTCTTCCACCTCGCCTCTCCCTGCATCGTCGATCAAGTCCACGACCCCGAGAAGGAGCTTCTGGACCCGGCGATCTATGGAACGCTCAATGTTCTGACGGCGGCGAAGCACGCTGGGGTCAGCCGTGTGGTGCTGACGTCATCCATTTCCGCCATCACTCCCAGCCGAAGCTGGCCGTCTGATAAGGTCAAGGGCGAGGATTGCTGGACAGACATTGACTACTGCAAGCAGAAGGGATTGTGGTATCCATTATCAAAAACGCTGGCGGAGAAAGCTGCGTGGGAATTTGCCAAGGAGAAGGGGCTGGATGTGATTGTGGTGAATCCGGGCACGGTGATGGGCCCTGTTATCTCGCCCAGGCTCAATGCTAGCATGTTGATGCTCGTTCGCCTTCTTGAGGGTTGCACTGAAACATATGAGGACTTCTTTATGGGATCTGTGCATTTTAAAGATGTAGCTCAAGCGCACATTTTAGTGTATGAGAACAAATCAGCAGCAGGTAGGCACTTGTGTGTGGAAGCTATATCACATTATGGTGACTTTGTGGCAAAGGTTGCTGAACTTTACCCTGAGTACAAGGTTCCCAGTTTGCCAAAGGACACCCAACCGGGCTTGCTGAGGGAAAAGAACGGAGCGAAGAAGCTAATGAACTTGGGTTTAGAATTCATTCCCATGGATCAAATTATCAAGGATGGTGTTGAGAGCCTAAAGAGCAAGGGATTTATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

325

Amino Acids

35.59

Weight (kDa)

5.95

Isoelectric Point (pI)

25.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 7 - 131 3.6e-10 NmrA-like family
Epimerase PF01370 8 - 246 5.1e-25 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 8 - 141 5.2e-10 Polysaccharide biosynthesis protein
3Beta_HSD PF01073 10 - 240 7.9e-20 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 129 1.2e-16 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 200 1.2e-09 Male sterility protein
NAD_binding_10 PF13460 12 - 191 2.1e-11 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 731
AccII CGCG 1 cut(s) 172
AciI CCGC 5 cut(s) 42, 222, 344, 393, 509
AclWI GGATC 4 cut(s) 61, 120, 685, 927
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 2 cut(s) 527, 905
AcyI GRCGYC 2 cut(s) 243, 380
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 2 cut(s) 295, 640
AflII CTTAAG 1 cut(s) 116
AgeI ACCGGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 599
AleI CACNNNNGTG 1 cut(s) 753
AluBI AGCT 6 cut(s) 301, 414, 518, 701, 764, 886
AluI AGCT 6 cut(s) 301, 414, 518, 701, 764, 886
Alw26I GTCTC 3 cut(s) 74, 125, 185
AlwI GGATC 4 cut(s) 61, 120, 685, 927
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 416, 583
ApaI GGGCCC 1 cut(s) 587
ApeKI GCWGC 4 cut(s) 45, 234, 518, 737
ApoI RAATTY 2 cut(s) 527, 905
AsiGI ACCGGT 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 909
AspLEI GCGC 2 cut(s) 174, 709
AspS9I GGNCC 3 cut(s) 307, 583, 584
AsuC2I CCSGG 3 cut(s) 311, 570, 852
AsuHPI GGTGA 5 cut(s) 22, 26, 574, 589, 791
AsuNHI GCTAGC 1 cut(s) 611
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 2 cut(s) 575, 587
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 860
BbvI GCAGC 4 cut(s) 32, 221, 505, 749
BccI CCATC 3 cut(s) 404, 574, 929
BceAI ACGGC 4 cut(s) 209, 351, 357, 403
BciT130I CCWGG 1 cut(s) 601
BciVI GTATCC 1 cut(s) 498
BcnI CCSGG 3 cut(s) 311, 570, 852
BcoDI GTCTC 3 cut(s) 74, 125, 185
BfaI CTAG 2 cut(s) 143, 612
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 731
BfuI GTATCC 1 cut(s) 498
BisI GCNGC 7 cut(s) 43, 46, 222, 235, 345, 519, 738
BlsI GCNGC 7 cut(s) 44, 47, 223, 236, 346, 520, 739
Bme1390I CCNGG 4 cut(s) 311, 570, 601, 852
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 307, 583, 584
BmiI GGNNCC 3 cut(s) 309, 585, 825
BmrFI CCNGG 4 cut(s) 311, 570, 601, 852
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 3 cut(s) 148, 276, 612
BmtI GCTAGC 1 cut(s) 615
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 860
BpuEI CTTGAG 2 cut(s) 659, 687
BpuMI CCSGG 3 cut(s) 311, 570, 852
BsaHI GRCGYC 2 cut(s) 243, 380
BsaJI CCNNGG 3 cut(s) 534, 599, 915
BsaWI WCCGGW 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 640
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 828
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 3 cut(s) 534, 599, 915
BseGI GGATG 3 cut(s) 383, 556, 940
BseLI CCNNNNNNNGG 2 cut(s) 295, 640
BseMII CTCAG 2 cut(s) 804, 851
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 3 cut(s) 62, 65, 188
BseSI GKGCMC 2 cut(s) 575, 587
BseXI GCAGC 4 cut(s) 32, 221, 505, 749
BseYI CCCAGC 2 cut(s) 356, 404
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 418, 585
BshTI ACCGGT 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 5 cut(s) 33, 240, 311, 569, 851
BslI CCNNNNNNNGG 2 cut(s) 295, 640
BsmAI GTCTC 3 cut(s) 74, 125, 185
BsmBI CGTCTC 3 cut(s) 74, 125, 185
BsnI GGCC 2 cut(s) 418, 585
BsoBI CYCGRG 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 2 cut(s) 575, 587
Bsp143I GATC 6 cut(s) 53, 112, 274, 315, 677, 919
Bsp19I CCATGG 1 cut(s) 915
BspACI CCGC 5 cut(s) 42, 222, 344, 393, 509
BspANI GGCC 2 cut(s) 418, 585
BspCNI CTCAG 2 cut(s) 805, 852
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 309, 585, 825
BspMI ACCTGC 1 cut(s) 731
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 4 cut(s) 61, 120, 685, 927
BspTI CTTAAG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 1 cut(s) 828
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 534, 599, 915
BssMI GATC 6 cut(s) 53, 112, 274, 315, 677, 919
BssNI GRCGYC 2 cut(s) 243, 380
BssT1I CCWWGG 2 cut(s) 534, 915
Bst2UI CCWGG 1 cut(s) 601
Bst4CI ACNGT 4 cut(s) 83, 94, 106, 577
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 2 cut(s) 243, 380
BstAFI CTTAAG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 797
BstC8I GCNNGC 6 cut(s) 354, 416, 470, 507, 613, 857
BstDEI CTNAG 2 cut(s) 813, 860
BstDSI CCRYGG 1 cut(s) 915
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 3 cut(s) 383, 556, 940
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 2 cut(s) 174, 709
BstKTI GATC 6 cut(s) 56, 115, 277, 318, 680, 922
BstMAI GTCTC 3 cut(s) 74, 125, 185
BstMBI GATC 6 cut(s) 53, 112, 274, 315, 677, 919
BstMWI GCNNNNNNNGC 6 cut(s) 240, 353, 444, 515, 797, 954
BstNI CCWGG 1 cut(s) 601
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 4 cut(s) 309, 568, 599, 850
BstSLI GKGCMC 2 cut(s) 575, 587
BstUI CGCG 1 cut(s) 172
BstV1I GCAGC 4 cut(s) 32, 221, 505, 749
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 112, 677
BstYI RGATCY 2 cut(s) 112, 677
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 2 cut(s) 418, 585
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 3 cut(s) 383, 556, 940
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 1 cut(s) 731
Cac8I GCNNGC 6 cut(s) 354, 416, 470, 507, 613, 857
CfoI GCGC 2 cut(s) 174, 709
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 3 cut(s) 307, 583, 584
CseI GACGC 2 cut(s) 16, 232
Csp6I GTAC 1 cut(s) 817
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 2 cut(s) 616, 916
CviQI GTAC 1 cut(s) 817
DdeI CTNAG 2 cut(s) 813, 860
DpnI GATC 6 cut(s) 55, 114, 276, 317, 679, 921
DpnII GATC 6 cut(s) 53, 112, 274, 315, 677, 919
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 2 cut(s) 382, 524
Eco130I CCWWGG 2 cut(s) 534, 915
Eco24I GRGCYC 1 cut(s) 587
Eco47I GGWCC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 599
EcoT14I CCWWGG 2 cut(s) 534, 915
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 2 cut(s) 534, 915
Esp3I CGTCTC 3 cut(s) 74, 125, 185
FaeI CATG 2 cut(s) 619, 919
FatI CATG 2 cut(s) 615, 915
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 7 cut(s) 43, 46, 222, 235, 345, 519, 738
FokI GGATG 3 cut(s) 370, 563, 947
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 7 cut(s) 43, 46, 222, 235, 345, 519, 738
FspBI CTAG 2 cut(s) 143, 612
GlaI GCGC 2 cut(s) 173, 708
GluI GCNGC 7 cut(s) 43, 46, 222, 235, 345, 519, 738
GsaI CCCAGC 2 cut(s) 360, 408
HaeIII GGCC 2 cut(s) 418, 585
HapII CCGG 5 cut(s) 33, 240, 311, 569, 851
HgaI GACGC 2 cut(s) 16, 232
HhaI GCGC 2 cut(s) 174, 709
Hin1I GRCGYC 2 cut(s) 243, 380
Hin1II CATG 2 cut(s) 619, 919
Hin6I GCGC 2 cut(s) 172, 707
HinP1I GCGC 2 cut(s) 172, 707
HinfI GANTC 2 cut(s) 167, 565
HpaII CCGG 5 cut(s) 33, 240, 311, 569, 851
HphI GGTGA 5 cut(s) 22, 26, 574, 589, 791
Hpy166II GTNNAC 2 cut(s) 97, 283
Hpy188I TCNGA 2 cut(s) 339, 424
Hpy188III TCNNGA 4 cut(s) 143, 187, 305, 638
Hpy8I GTNNAC 2 cut(s) 97, 283
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 289, 469, 535, 644
HpyCH4III ACNGT 4 cut(s) 83, 94, 106, 577
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 48, 267, 468, 648, 685
HpyF10VI GCNNNNNNNGC 6 cut(s) 240, 353, 444, 515, 797, 954
HpyF3I CTNAG 2 cut(s) 813, 860
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 2 cut(s) 243, 380
Hsp92II CATG 2 cut(s) 619, 919
HspAI GCGC 2 cut(s) 172, 707
Kzo9I GATC 6 cut(s) 53, 112, 274, 315, 677, 919
LmnI GCTCC 4 cut(s) 161, 242, 298, 875
Lsp1109I GCAGC 4 cut(s) 32, 221, 505, 749
LweI GCATC 3 cut(s) 148, 276, 612
MaeI CTAG 2 cut(s) 143, 612
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 2 cut(s) 28, 779
MalI GATC 6 cut(s) 55, 114, 276, 317, 679, 921
MboI GATC 6 cut(s) 53, 112, 274, 315, 677, 919
MboII GAAGA 3 cut(s) 175, 238, 892
MflI RGATCY 2 cut(s) 112, 677
MhlI GDGCHC 2 cut(s) 575, 587
MluCI AATT 3 cut(s) 527, 905, 924
MlyI GAGTC 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 909
MseI TTAA 2 cut(s) 117, 690
MslI CAYNNNNRTG 6 cut(s) 578, 620, 716, 753, 777, 914
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 5 cut(s) 33, 240, 311, 569, 851
MspR9I CCNGG 4 cut(s) 311, 570, 601, 852
MvaI CCWGG 1 cut(s) 601
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 6 cut(s) 240, 353, 444, 515, 797, 954
NciI CCSGG 3 cut(s) 311, 570, 852
NcoI CCATGG 1 cut(s) 915
NdeI CATATG 1 cut(s) 658
NdeII GATC 6 cut(s) 53, 112, 274, 315, 677, 919
NheI GCTAGC 1 cut(s) 611
NlaIII CATG 2 cut(s) 619, 919
NlaIV GGNNCC 3 cut(s) 309, 585, 825
NmuCI GTSAC 2 cut(s) 28, 779
NspI RCATGY 1 cut(s) 619
OliI CACNNNNGTG 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 909
PfeI GAWTC 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 7 cut(s) 44, 47, 223, 236, 346, 520, 739
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 599
PspFI CCCAGC 2 cut(s) 356, 404
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 3 cut(s) 309, 585, 825
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 3 cut(s) 307, 583, 584
PsuI RGATCY 2 cut(s) 112, 677
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
RseI CAYNNNNRTG 6 cut(s) 578, 620, 716, 753, 777, 914
SaqAI TTAA 2 cut(s) 117, 690
SatI GCNGC 7 cut(s) 43, 46, 222, 235, 345, 519, 738
Sau3AI GATC 6 cut(s) 53, 112, 274, 315, 677, 919
Sau96I GGNCC 3 cut(s) 307, 583, 584
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 311, 570, 601, 852
SduI GDGCHC 2 cut(s) 575, 587
SfaNI GCATC 3 cut(s) 148, 276, 612
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 6 cut(s) 578, 620, 716, 753, 777, 914
SmlI CTYRAG 3 cut(s) 116, 638, 702
SmoI CTYRAG 3 cut(s) 116, 638, 702
Sse9I AATT 3 cut(s) 527, 905, 924
SsiI CCGC 5 cut(s) 42, 222, 344, 393, 509
SspMI CTAG 2 cut(s) 143, 612
StyD4I CCNGG 4 cut(s) 309, 568, 599, 850
StyI CCWWGG 2 cut(s) 534, 915
TaaI ACNGT 4 cut(s) 83, 94, 106, 577
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 5, 201, 273
TasI AATT 3 cut(s) 527, 905, 924
TatI WGTACW 1 cut(s) 816
TauI GCSGC 3 cut(s) 45, 224, 347
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 2 cut(s) 117, 690
Tru9I TTAA 2 cut(s) 117, 690
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 28, 779
TseI GCWGC 4 cut(s) 45, 234, 518, 737
Tsp45I GTSAC 2 cut(s) 28, 779
TspDTI ATGAA 3 cut(s) 898, 905, 960
TspGWI ACGGA 3 cut(s) 56, 167, 888
TspRI CASTG 1 cut(s) 655
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 307
XagI CCTNNNNNAGG 1 cut(s) 638
XapI RAATTY 2 cut(s) 527, 905
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 619
XmnI GAANNNNTTC 1 cut(s) 909
XspI CTAG 2 cut(s) 143, 612
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.