pycom11g10580

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0004073
Physical Location & Seq
Forward (+)
8993055 .. 8994376
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGAGTGCAGTACTGAAACAATGAACACAAATTACACAACCACTTCATCAACTATGTCTCAATCTCCTCCTTCTTCTTCACCATCGTCTCCTCCAACCCCAACTCCCACTCCATCTCCACCAGTTGTTATAAGTCCTTGTGCTGCATGCAAAATCTTGAGGAGAAGATGTGCAGACAAGTGCGTTTTGGCCCCTTACTTTCCTCCCTCTGATCCAGTCAAGTTTACTATAGCTCATCGTGTCTTTGGGGCAAGCAATATCATCAAGTTCTTGCAGGAACTTCCAGAATCTCAAAGAGCCGATGCAGTGAGCAGCATGGTTTATGAGGCAAGTGCAAGAATTAGAGACCCAGTTTACGGGTGTGCTGGAGCAATCTGCCACTTGCAAAAGCAAGTGAATGAGCTGCAGGCACAACTGGCCAAGGCACAGGCTGAGCTTGTCAACATGCAATGCCAGCAAACCAACCTTGTGGCTCTGATTTGCATGGAAATGTCGCACCCTAATTCCGAGCAAGGATCTCCTGCACAATCACTTGATCACAACTTCGTCGCCACCAATCCTCACGGCGGCAACCAGACCAACTTAGGCTTCCTTGATGATTCCACCACGCTAGGCTCATTGTGGGAACCACTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

214

Amino Acids

23.03

Weight (kDa)

5.68

Isoelectric Point (pI)

71.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 46 - 143 4.3e-41 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AciI CCGC 1 cut(s) 567
AclWI GGATC 2 cut(s) 206, 523
AcoI YGGCCR 1 cut(s) 417
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 2 cut(s) 356, 566
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 3 cut(s) 233, 403, 436
AluI AGCT 3 cut(s) 233, 403, 436
Alw26I GTCTC 3 cut(s) 63, 93, 339
AlwI GGATC 2 cut(s) 206, 523
AoxI GGCC 2 cut(s) 189, 417
ApeKI GCWGC 3 cut(s) 143, 312, 403
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 72
BalI TGGCCA 1 cut(s) 419
BbvI GCAGC 3 cut(s) 130, 324, 390
BccI CCATC 2 cut(s) 91, 121
BceAI ACGGC 1 cut(s) 580
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 3 cut(s) 63, 93, 339
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 2 cut(s) 228, 404
BisI GCNGC 4 cut(s) 144, 313, 404, 568
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 4 cut(s) 145, 314, 405, 569
BmcAI AGTACT 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 192, 627
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 8 cut(s) 88, 94, 100, 118, 124, 130, 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 566
Bse1I ACTGG 4 cut(s) 122, 215, 350, 420
Bse3DI GCAATG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 2 cut(s) 356, 566
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 4 cut(s) 122, 215, 350, 420
BseRI GAGGAG 3 cut(s) 57, 81, 175
BseXI GCAGC 3 cut(s) 130, 324, 390
BsgI GTGCAG 3 cut(s) 28, 192, 507
BshFI GGCC 2 cut(s) 191, 419
BslI CCNNNNNNNGG 2 cut(s) 356, 566
BsmAI GTCTC 3 cut(s) 63, 93, 339
BsmBI CGTCTC 1 cut(s) 93
BsnI GGCC 2 cut(s) 191, 419
Bso31I GGTCTC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 211, 515, 535
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 1 cut(s) 567
BspANI GGCC 2 cut(s) 191, 419
BspCNI CTCAG 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 192, 627
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 2 cut(s) 206, 523
BspTNI GGTCTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 4 cut(s) 122, 215, 350, 420
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 3 cut(s) 211, 515, 535
BssT1I CCWWGG 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 148, 253, 408, 455
BstDEI CTNAG 2 cut(s) 432, 583
BstKTI GATC 3 cut(s) 214, 518, 538
BstMAI GTCTC 3 cut(s) 63, 93, 339
BstMBI GATC 3 cut(s) 211, 515, 535
BstMWI GCNNNNNNNGC 2 cut(s) 416, 454
BstNSI RCATGY 2 cut(s) 150, 448
BstSFI CTRYAG 2 cut(s) 228, 404
BstV1I GCAGC 3 cut(s) 130, 324, 390
BstX2I RGATCY 1 cut(s) 515
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 2 cut(s) 191, 419
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 4 cut(s) 148, 253, 408, 455
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 12
CviAII CATG 5 cut(s) 147, 316, 445, 484, 639
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 432, 583
DpnI GATC 3 cut(s) 213, 517, 537
DpnII GATC 3 cut(s) 211, 515, 535
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 420
Eco31I GGTCTC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 420
ErhI CCWWGG 1 cut(s) 420
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 5 cut(s) 150, 319, 448, 487, 642
FaiI YATR 9 cut(s) 56, 131, 148, 230, 317, 324, 446, 485, 640
FatI CATG 5 cut(s) 146, 315, 444, 483, 638
FbaI TGATCA 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 144, 313, 404, 568
Fsp4HI GCNGC 4 cut(s) 144, 313, 404, 568
FspBI CTAG 1 cut(s) 611
GluI GCNGC 4 cut(s) 144, 313, 404, 568
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 191, 419
Hin1II CATG 5 cut(s) 150, 319, 448, 487, 642
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 2 cut(s) 287, 599
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 3 cut(s) 225, 355, 442
Hpy188I TCNGA 3 cut(s) 211, 477, 508
Hpy188III TCNNGA 2 cut(s) 157, 284
Hpy8I GTNNAC 3 cut(s) 225, 355, 442
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 454
HpyF3I CTNAG 2 cut(s) 432, 583
Hsp92II CATG 5 cut(s) 150, 319, 448, 487, 642
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 211, 515, 535
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 3 cut(s) 130, 324, 390
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 611
MalI GATC 3 cut(s) 213, 517, 537
MboI GATC 3 cut(s) 211, 515, 535
MboII GAAGA 3 cut(s) 66, 69, 177
MflI RGATCY 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 3 cut(s) 31, 339, 502
MluNI TGGCCA 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 7 cut(s) 78, 102, 153, 213, 217, 319, 570
Mox20I TGGCCA 1 cut(s) 419
MscI TGGCCA 1 cut(s) 419
MslI CAYNNNNRTG 1 cut(s) 488
Msp20I TGGCCA 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 416, 454
NdeII GATC 3 cut(s) 211, 515, 535
NlaIII CATG 5 cut(s) 150, 319, 448, 487, 642
NlaIV GGNNCC 2 cut(s) 192, 627
NspI RCATGY 2 cut(s) 150, 448
PaeI GCATGC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 287, 599
PkrI GCNGC 4 cut(s) 145, 314, 405, 569
PsiI TTATAA 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 192, 627
PspPI GGNCC 1 cut(s) 190
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 488
SatI GCNGC 4 cut(s) 144, 313, 404, 568
Sau3AI GATC 3 cut(s) 211, 515, 535
Sau96I GGNCC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 13
SetI ASST 4 cut(s) 235, 405, 438, 468
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 228, 404
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 31, 339, 502
SsiI CCGC 1 cut(s) 567
SspMI CTAG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 420
TasI AATT 3 cut(s) 31, 339, 502
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 2 cut(s) 287, 599
TscAI CASTG 1 cut(s) 312
TseI GCWGC 3 cut(s) 143, 312, 403
TspDTI ATGAA 2 cut(s) 36, 38
TspRI CASTG 1 cut(s) 312
XceI RCATGY 2 cut(s) 150, 448
XspI CTAG 1 cut(s) 611
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.