pycom11g11960

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003851
Physical Location & Seq
Reverse (-)
10809139 .. 10810939
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGCACCTTGGGGAGAGTGTTGCTATTGCCCGTACAGTGGGGCATTTATCCAAGAGTTCTGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAGTGGCTGTTACGATGCAAGAATTTAGCAAGGAGATGACCAAGGCAGGAGTAATTGAAGAGGTGGTGAATGATAGTCTTGACACAGCACTAGACTCCGAGGACATAGAAGAAGAAATAGAAGAAGAAGTCGACAAAGTTTTGACTTCTATAGCTGGTGAGACTGCTGCCCAGCTTCCAGAAGCGGTCAGGAAGGAGAGGTTGAAGCAACCTGCTACTGCACAAGCTAGACAGGAGGAAGAGGCAATAGCTGAGGGTGTCGATGATGAGGCAGAGTTGGAAGAAATAAGGGCCCGGCTTGCAAACGTTAGATCGATAAGATAA

Protein Analysis

141

Amino Acids

15.39

Weight (kDa)

4.48

Isoelectric Point (pI)

62.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 11 - 98 1.4e-17 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 284
AclI AACGTT 1 cut(s) 405
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 2 cut(s) 37, 91
AgsI TTSAA 2 cut(s) 158, 304
AluBI AGCT 5 cut(s) 73, 254, 274, 326, 350
AluI AGCT 5 cut(s) 73, 254, 274, 326, 350
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 1 cut(s) 390
ApaI GGGCCC 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 390, 391
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 178, 269
BaeGI GKGCMC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 2 cut(s) 191, 327
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 390, 391
BmiI GGNNCC 2 cut(s) 96, 392
BmrFI CCNGG 1 cut(s) 394
BmsI GCATC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 7, 141, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 91
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 7, 141, 198
BseLI CCNNNNNNNGG 2 cut(s) 37, 91
BseMII CTCAG 2 cut(s) 51, 342
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 413
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 37, 91
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 1 cut(s) 392
Bsp120I GGGCCC 1 cut(s) 390
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 410
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 2 cut(s) 52, 343
BspDI ATCGAT 1 cut(s) 413
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 96, 392
BspMI ACCTGC 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 7, 141, 198
BssMI GATC 1 cut(s) 410
BssT1I CCWWGG 2 cut(s) 7, 141
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 153, 333
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 60, 351
BstENI CCTNNNNNAGG 1 cut(s) 89
BstKTI GATC 1 cut(s) 413
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 392
BstSFI CTRYAG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 413
BsuRI GGCC 1 cut(s) 392
BsuTUI ATCGAT 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 399
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 390, 391
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 1 cut(s) 33
CviAII CATG 1 cut(s) 88
CviJI RGCY 9 cut(s) 73, 95, 107, 254, 274, 326, 350, 392, 397
CviKI_1 RGCY 9 cut(s) 73, 95, 107, 254, 274, 326, 350, 392, 397
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 60, 351
DpnI GATC 1 cut(s) 412
DpnII GATC 1 cut(s) 410
Eam1104I CTCTTC 2 cut(s) 153, 333
EarI CTCTTC 2 cut(s) 153, 333
Eco130I CCWWGG 2 cut(s) 7, 141
Eco24I GRGCYC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 7, 141
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 2 cut(s) 7, 141
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 68, 89, 206, 251
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 191, 327
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 394
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 394
HphI GGTGA 2 cut(s) 178, 269
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 61, 199
Hpy188III TCNNGA 5 cut(s) 88, 98, 179, 278, 289
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 85, 286
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 4, 118, 320, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 2 cut(s) 60, 351
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 410
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 9 cut(s) 111, 132, 240, 274, 284, 291, 317, 324, 407
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 105
MaeI CTAG 2 cut(s) 191, 327
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 412
MboI GATC 1 cut(s) 410
MboII GAAGA 7 cut(s) 170, 221, 224, 233, 236, 350, 392
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 2 cut(s) 122, 153
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 9 cut(s) 55, 95, 154, 193, 291, 328, 334, 346, 361
MspI CCGG 1 cut(s) 394
MspR9I CCNGG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 398
NciI CCSGG 1 cut(s) 394
NdeII GATC 1 cut(s) 410
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 96, 392
PagI TCATGA 1 cut(s) 87
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 96, 392
PspOMI GGGCCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 390, 391
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SalI GTCGAC 1 cut(s) 230
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 410
Sau96I GGNCC 2 cut(s) 390, 391
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 394
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 2 cut(s) 122, 153
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 191, 327
StyD4I CCNGG 1 cut(s) 392
StyI CCWWGG 2 cut(s) 7, 141
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 231, 360, 413
TasI AATT 2 cut(s) 122, 153
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 83, 104
TspRI CASTG 1 cut(s) 42
XagI CCTNNNNNAGG 1 cut(s) 89
XapI RAATTY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 2 cut(s) 191, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.