pycom11g17110

Xanthine dehydrogenase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
19132608 .. 19136622
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1668 bp
ATGGGATCGATCCCTCCAGGTCACTTGAAGAAGGAAGAGGAGGAGCTGGAACAATCGGAGGAGGACTCAAAAGAGGCCATACTGTATGTCAATGGAGTTCGTAGAGTTTTGCCTGACGGGTTGGCCCATTTGAGCCTTCTCGAGTATCTCAGAGATATAGGTTTGACGGGGACAAAGCTTGGCTGTGGTGAAGGTGGTTGTGGTGCTTGCACTGTTATGGTTTCGCATTACGACAAAGAACTGAAGAAAAGTTTCCACTATGCCGTCAATGCATGCTTGGCTCCTTTGTATTCTGTAGAAGGGATGCATGTAATTACTGTGGAAGGACTAGGGAGCCACAAGCAGGGCTTGCACCCAATTCAAGAATCATTGGCACGATCTCATGGTTCACAATGTGGATATTGCACCCCCGGTTTTATTATGTCCATCTATGCCTTGTTAAGGTCAAGTCAGAAACCACCTAATGAGGAGCAGATTGAAGAATGTCTTGCAGGAAATTTGTGTAGATGCACAGGTTACAGGCCAATTGTTGATGCTTTTCGTGTCTTTGCCAAAACAAATGATACACCATACATTAATACATCTTCACTAAGCTCCGAAGGAGGTGAGTTTGTGTGCCCTTTGACTGGAAAGCCCTGTTCATGTGGATTGAAAAGTGAAAGTTCATGCACCACTCATGAAAGTGGTACTCATGGTGAGAGGTATGCACCTGTCTCGTACAGTGAAATTGATGGAAGCACATACACAGACAAGGAGTTTATTTTTCCTCCTGAGCTATTATTGAGAAAATCGACTTATTTGAGTTTGACTGGTTTTGGTGGATTAAAGTGGTTCCAACCGTTGAGTCTTAAACAAGTGCTAGGATTGAAGGAAAAATACCCTGATGCAAAATTATTGGTAGGCAATACAGAGGTGGGAATTGAAATGAGGTTGAAAAAAATTCAACATAAGGTTTTGATTTTCGTTACAAATGTACCTGAACTCAGTAAATTGACTGTGAAGGATGATGGCATAGAGATAGGTTCAGCAGTAAGACTTTCTGAACTACTTAAAGTTCTAAGAACGGTCATAACAGAACGCGCAGCTCATGAAACTTCTGCTTGTAAGGCCTTTGTTGAACAATTAAAATGGTTTGCTGGGGTGCAGATAAGAAATGTTGCGTCTGTGGGTGGAAATATCTGTACAGCCAGTCCAATATCAGACTTGAACCCTCTTTGGATGGCCTCTAGAGCGAAATTTCAGATTATTGATTGCAAAGGGAATATTAGAATGACACTGGCAGAGAACTTTTTCTTGGATTACCGAAAGGTGGATCTGGCCAGTGGTGAAATTTTACTCTCTGTATTTTTACCTTGGACTAGGTCCTTCGAGTATGTGAAAGAGTATAAGCAAGCTCACAGAAGGGACGATGATATTGCAATTGTGAATGCTGGGATTCGTGTTCATCTTGAGGACAGAGATGGCTGGGTTGTGTCTGATGCGTCCATTGCTTATGGTGGAGTTGCTCCACTCTCTCTTTCTGCAAAAAGAACGAAAAAATTTCTCATTGGGAAGAGTTGGAACCAGGAGATGTTGCAGGGTGCCTTGAAAGTCCTGCAAGAAGATGTATTGCTCAAGGATGATGCTCCTGGTGGAATGGTGGAGTTTCGTAGATCGATTGAGTGTTAG

Protein Analysis

556

Amino Acids

61.27

Weight (kDa)

6.42

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2 PF00111 42 - 95 8.1e-09 2Fe-2S iron-sulfur cluster binding domain
Fer2_2 PF01799 106 - 180 5.4e-33 [2Fe-2S] binding domain
FAD_binding_5 PF00941 275 - 452 4e-49 FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C PF03450 461 - 553 4.9e-27 CO dehydrogenase flavoprotein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1580
AccII CGCG 1 cut(s) 1080
AclWI GGATC 3 cut(s) 4, 13, 1320
AcoI YGGCCR 1 cut(s) 1317
AcsI RAATTY 5 cut(s) 496, 939, 1235, 1329, 1538
AcuI CTGAAG 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 4 cut(s) 688, 719, 975, 1183
AfiI CCNNNNNNNGG 4 cut(s) 343, 441, 626, 1309
AjnI CCWGG 3 cut(s) 16, 1563, 1627
AjuI GAANNNNNNNTTGG 2 cut(s) 1277, 1309
AluBI AGCT 6 cut(s) 46, 178, 594, 775, 1085, 1394
AluI AGCT 6 cut(s) 46, 178, 594, 775, 1085, 1394
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 3 cut(s) 4, 13, 1320
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 6 cut(s) 75, 123, 521, 1107, 1221, 1317
ApeKI GCWGC 1 cut(s) 1082
ApoI RAATTY 5 cut(s) 496, 939, 1235, 1329, 1538
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 2 cut(s) 251, 1289
AspLEI GCGC 1 cut(s) 1082
AspS9I GGNCC 2 cut(s) 124, 1362
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 200, 617, 707, 1337
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 1362
BaeGI GKGCMC 1 cut(s) 620
BaeI ACNNNNGTAYC 2 cut(s) 957, 990
BalI TGGCCA 1 cut(s) 1319
BanI GGYRCC 1 cut(s) 1580
BarI GAAGNNNNNNTAC 2 cut(s) 860, 892
BbvI GCAGC 1 cut(s) 1094
BccI CCATC 5 cut(s) 434, 725, 1001, 1213, 1454
BceAI ACGGC 1 cut(s) 248
BcgI CGANNNNNNTGC 4 cut(s) 696, 730, 1397, 1431
BciT130I CCWGG 3 cut(s) 18, 1565, 1629
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 718
BfaI CTAG 4 cut(s) 329, 860, 1227, 1359
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 1083
BlsI GCNGC 1 cut(s) 1084
Bme1390I CCNGG 4 cut(s) 18, 411, 1565, 1629
Bme18I GGWCC 1 cut(s) 1362
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 124, 1362
BmiI GGNNCC 5 cut(s) 282, 335, 833, 1562, 1582
BmrFI CCNGG 4 cut(s) 18, 411, 1565, 1629
BmsI GCATC 6 cut(s) 294, 497, 523, 874, 1468, 1612
BplI GAGNNNNNCTC 2 cut(s) 50, 82
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 1469, 1598
BpuMI CCSGG 1 cut(s) 411
Bsa29I ATCGAT 2 cut(s) 8, 1655
BsaJI CCNNGG 2 cut(s) 409, 1352
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 441, 626, 1309
Bse1I ACTGG 5 cut(s) 631, 814, 1188, 1281, 1320
Bse3DI GCAATG 1 cut(s) 1485
BseBI CCWGG 3 cut(s) 18, 1565, 1629
BseCI ATCGAT 2 cut(s) 8, 1655
BseDI CCNNGG 2 cut(s) 409, 1352
BseGI GGATG 4 cut(s) 309, 1009, 1224, 1624
BseLI CCNNNNNNNGG 4 cut(s) 343, 441, 626, 1309
BseMI GCAATG 1 cut(s) 1485
BseMII CTCAG 3 cut(s) 163, 762, 997
BseNI ACTGG 5 cut(s) 631, 814, 1188, 1281, 1320
BseRI GAGGAG 4 cut(s) 53, 56, 74, 482
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 1 cut(s) 1094
BseYI CCCAGC 3 cut(s) 1136, 1430, 1464
BsgI GTGCAG 1 cut(s) 1163
Bsh1236I CGCG 1 cut(s) 1080
BshFI GGCC 6 cut(s) 77, 125, 523, 1109, 1223, 1319
BshNI GGYRCC 1 cut(s) 1580
BshVI ATCGAT 2 cut(s) 8, 1655
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 184, 1418
BslI CCNNNNNNNGG 4 cut(s) 343, 441, 626, 1309
BsmAI GTCTC 1 cut(s) 718
BsmFI GGGAC 2 cut(s) 184, 1418
BsmI GAATGC 1 cut(s) 1432
BsnI GGCC 6 cut(s) 77, 125, 523, 1109, 1223, 1319
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 1181
Bsp143I GATC 5 cut(s) 5, 9, 377, 1312, 1652
BspANI GGCC 6 cut(s) 77, 125, 523, 1109, 1223, 1319
BspCNI CTCAG 3 cut(s) 162, 763, 996
BspDI ATCGAT 2 cut(s) 8, 1655
BspFNI CGCG 1 cut(s) 1080
BspHI TCATGA 2 cut(s) 676, 1087
BspLI GGNNCC 5 cut(s) 282, 335, 833, 1562, 1582
BspPI GGATC 3 cut(s) 4, 13, 1320
BspT107I GGYRCC 1 cut(s) 1580
BsrDI GCAATG 1 cut(s) 1485
BsrGI TGTACA 1 cut(s) 1181
BsrI ACTGG 5 cut(s) 631, 814, 1188, 1281, 1320
BssECI CCNNGG 2 cut(s) 409, 1352
BssMI GATC 5 cut(s) 5, 9, 377, 1312, 1652
BssT1I CCWWGG 1 cut(s) 1352
Bst2UI CCWGG 3 cut(s) 18, 1565, 1629
Bst4CI ACNGT 7 cut(s) 84, 214, 319, 722, 840, 997, 1066
Bst6I CTCTTC 2 cut(s) 30, 1547
BstAPI GCANNNNNTGC 1 cut(s) 349
BstAUI TGTACA 1 cut(s) 1181
BstC8I GCNNGC 4 cut(s) 208, 274, 350, 1392
BstDEI CTNAG 5 cut(s) 149, 590, 771, 983, 1058
BstENI CCTNNNNNAGG 1 cut(s) 439
BstF5I GGATG 4 cut(s) 309, 1009, 1224, 1624
BstFNI CGCG 1 cut(s) 1080
BstHHI GCGC 1 cut(s) 1082
BstKTI GATC 5 cut(s) 8, 12, 380, 1315, 1655
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 5 cut(s) 5, 9, 377, 1312, 1652
BstMWI GCNNNNNNNGC 6 cut(s) 269, 278, 349, 1106, 1229, 1487
BstNI CCWGG 3 cut(s) 18, 1565, 1629
BstNSI RCATGY 2 cut(s) 276, 311
BstSCI CCNGG 4 cut(s) 16, 409, 1563, 1627
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 1 cut(s) 1094
BstX2I RGATCY 1 cut(s) 1312
BstYI RGATCY 1 cut(s) 1312
Bsu15I ATCGAT 2 cut(s) 8, 1655
BsuRI GGCC 6 cut(s) 77, 125, 523, 1109, 1223, 1319
BsuTUI ATCGAT 2 cut(s) 8, 1655
BtsCI GGATG 4 cut(s) 309, 1009, 1224, 1624
BtsIMutI CAGTG 4 cut(s) 210, 727, 1274, 1327
Cac8I GCNNGC 4 cut(s) 208, 274, 350, 1392
CciI TCATGA 2 cut(s) 676, 1087
CfoI GCGC 1 cut(s) 1082
Cfr13I GGNCC 2 cut(s) 124, 1362
ClaI ATCGAT 2 cut(s) 8, 1655
CseI GACGC 2 cut(s) 1149, 1470
Csp6I GTAC 4 cut(s) 687, 718, 974, 1182
CviAII CATG 8 cut(s) 273, 308, 383, 642, 666, 677, 692, 1088
CviQI GTAC 4 cut(s) 687, 718, 974, 1182
DdeI CTNAG 5 cut(s) 149, 590, 771, 983, 1058
DpnI GATC 5 cut(s) 7, 11, 379, 1314, 1654
DpnII GATC 5 cut(s) 5, 9, 377, 1312, 1652
DraIII CACNNNGTG 1 cut(s) 395
EaeI YGGCCR 1 cut(s) 1317
Eam1104I CTCTTC 2 cut(s) 30, 1547
EarI CTCTTC 2 cut(s) 30, 1547
Eco130I CCWWGG 1 cut(s) 1352
Eco147I AGGCCT 1 cut(s) 1109
Eco47I GGWCC 1 cut(s) 1362
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 1362
EcoRII CCWGG 3 cut(s) 16, 1563, 1627
EcoT14I CCWWGG 1 cut(s) 1352
EcoT22I ATGCAT 2 cut(s) 274, 309
ErhI CCWWGG 1 cut(s) 1352
FaeI CATG 8 cut(s) 276, 311, 386, 645, 669, 680, 695, 1091
FalI AAGNNNNNCTT 4 cut(s) 332, 364, 471, 503
FaqI GGGAC 2 cut(s) 184, 1418
FatI CATG 8 cut(s) 272, 307, 382, 641, 665, 676, 691, 1087
Fnu4HI GCNGC 1 cut(s) 1083
FokI GGATG 4 cut(s) 316, 1016, 1231, 1631
Fsp4HI GCNGC 1 cut(s) 1083
FspBI CTAG 4 cut(s) 329, 860, 1227, 1359
GlaI GCGC 1 cut(s) 1081
GluI GCNGC 1 cut(s) 1083
GsaI CCCAGC 3 cut(s) 1140, 1434, 1468
HaeIII GGCC 6 cut(s) 77, 125, 523, 1109, 1223, 1319
HapII CCGG 1 cut(s) 411
HgaI GACGC 2 cut(s) 1149, 1470
HhaI GCGC 1 cut(s) 1082
Hin1II CATG 8 cut(s) 276, 311, 386, 645, 669, 680, 695, 1091
Hin6I GCGC 1 cut(s) 1080
HinP1I GCGC 1 cut(s) 1080
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 4 cut(s) 65, 365, 844, 1435
HpaII CCGG 1 cut(s) 411
HphI GGTGA 4 cut(s) 200, 617, 707, 1337
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 8 cut(s) 58, 152, 453, 598, 1042, 1201, 1242, 1477
Hpy188III TCNNGA 7 cut(s) 140, 362, 677, 770, 1088, 1227, 1448
Hpy8I GTNNAC 1 cut(s) 389
HpyCH4III ACNGT 7 cut(s) 84, 214, 319, 722, 840, 997, 1066
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 278, 349, 1106, 1229, 1487
HpyF3I CTNAG 5 cut(s) 149, 590, 771, 983, 1058
Hsp92II CATG 8 cut(s) 276, 311, 386, 645, 669, 680, 695, 1091
HspAI GCGC 1 cut(s) 1080
Kzo9I GATC 5 cut(s) 5, 9, 377, 1312, 1652
LmnI GCTCC 7 cut(s) 43, 286, 333, 469, 599, 1510, 1630
Lsp1109I GCAGC 1 cut(s) 1094
LweI GCATC 6 cut(s) 294, 497, 523, 874, 1468, 1612
MaeI CTAG 4 cut(s) 329, 860, 1227, 1359
MaeIII GTNAC 3 cut(s) 20, 515, 964
MalI GATC 5 cut(s) 7, 11, 379, 1314, 1654
MboI GATC 5 cut(s) 5, 9, 377, 1312, 1652
MboII GAAGA 7 cut(s) 40, 47, 256, 491, 576, 1564, 1613
MfeI CAATTG 2 cut(s) 525, 1419
MflI RGATCY 1 cut(s) 1312
MhlI GDGCHC 1 cut(s) 620
MlsI TGGCCA 1 cut(s) 1319
MluNI TGGCCA 1 cut(s) 1319
MlyI GAGTC 2 cut(s) 59, 853
MmeI TCCRAC 2 cut(s) 859, 1538
Mox20I TGGCCA 1 cut(s) 1319
Mph1103I ATGCAT 2 cut(s) 274, 309
MroXI GAANNNNTTC 2 cut(s) 251, 1289
MscI TGGCCA 1 cut(s) 1319
MseI TTAA 6 cut(s) 440, 576, 824, 849, 1050, 1124
MslI CAYNNNNRTG 2 cut(s) 215, 681
Msp20I TGGCCA 1 cut(s) 1319
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 4 cut(s) 18, 411, 1565, 1629
MunI CAATTG 2 cut(s) 525, 1419
Mva1269I GAATGC 1 cut(s) 1432
MvaI CCWGG 3 cut(s) 18, 1565, 1629
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 6 cut(s) 269, 278, 349, 1106, 1229, 1487
NciI CCSGG 1 cut(s) 411
NdeII GATC 5 cut(s) 5, 9, 377, 1312, 1652
NlaIII CATG 8 cut(s) 276, 311, 386, 645, 669, 680, 695, 1091
NlaIV GGNNCC 5 cut(s) 282, 335, 833, 1562, 1582
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 2 cut(s) 274, 309
NspI RCATGY 2 cut(s) 276, 311
PaeI GCATGC 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 2 cut(s) 676, 1087
PceI AGGCCT 1 cut(s) 1109
PctI GAATGC 1 cut(s) 1432
PdmI GAANNNNTTC 2 cut(s) 251, 1289
PfeI GAWTC 2 cut(s) 365, 1435
PflFI GACNNNGTC 1 cut(s) 1360
PkrI GCNGC 1 cut(s) 1084
PleI GAGTC 2 cut(s) 59, 852
PpsI GAGTC 2 cut(s) 59, 852
PpuMI RGGWCCY 1 cut(s) 1362
PshBI ATTAAT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 1362
Psp6I CCWGG 3 cut(s) 16, 1563, 1627
PspFI CCCAGC 3 cut(s) 1136, 1430, 1464
PspGI CCWGG 3 cut(s) 16, 1563, 1627
PspN4I GGNNCC 5 cut(s) 282, 335, 833, 1562, 1582
PspPI GGNCC 2 cut(s) 124, 1362
PspPPI RGGWCCY 1 cut(s) 1362
PsuI RGATCY 1 cut(s) 1312
PsyI GACNNNGTC 1 cut(s) 1360
RsaI GTAC 4 cut(s) 688, 719, 975, 1183
RsaNI GTAC 4 cut(s) 687, 718, 974, 1182
RseI CAYNNNNRTG 2 cut(s) 215, 681
SaqAI TTAA 6 cut(s) 440, 576, 824, 849, 1050, 1124
SatI GCNGC 1 cut(s) 1083
Sau3AI GATC 5 cut(s) 5, 9, 377, 1312, 1652
Sau96I GGNCC 2 cut(s) 124, 1362
SchI GAGTC 2 cut(s) 59, 853
ScrFI CCNGG 4 cut(s) 18, 411, 1565, 1629
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 6 cut(s) 294, 497, 523, 874, 1468, 1612
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 1362
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 2 cut(s) 215, 681
SmlI CTYRAG 3 cut(s) 140, 1448, 1613
SmoI CTYRAG 3 cut(s) 140, 1448, 1613
SphI GCATGC 1 cut(s) 276
SseBI AGGCCT 1 cut(s) 1109
SspI AATATT 1 cut(s) 1264
SspMI CTAG 4 cut(s) 329, 860, 1227, 1359
StuI AGGCCT 1 cut(s) 1109
StyD4I CCNGG 4 cut(s) 16, 409, 1563, 1627
StyI CCWWGG 1 cut(s) 1352
TaaI ACNGT 7 cut(s) 84, 214, 319, 722, 840, 997, 1066
TaqI TCGA 5 cut(s) 8, 141, 791, 1368, 1655
TatI WGTACW 1 cut(s) 1181
TfiI GAWTC 2 cut(s) 365, 1435
Tru1I TTAA 6 cut(s) 440, 576, 824, 849, 1050, 1124
Tru9I TTAA 6 cut(s) 440, 576, 824, 849, 1050, 1124
TscAI CASTG 4 cut(s) 217, 727, 1281, 1327
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 1082
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 630, 654, 693, 1104, 1433
TspRI CASTG 4 cut(s) 217, 727, 1281, 1327
Tth111I GACNNNGTC 1 cut(s) 1360
VpaK11BI GGWCC 1 cut(s) 1362
VspI ATTAAT 1 cut(s) 576
XagI CCTNNNNNAGG 1 cut(s) 439
XapI RAATTY 5 cut(s) 496, 939, 1235, 1329, 1538
XbaI TCTAGA 1 cut(s) 1226
XceI RCATGY 2 cut(s) 276, 311
XhoI CTCGAG 1 cut(s) 140
XmnI GAANNNNTTC 2 cut(s) 251, 1289
XspI CTAG 4 cut(s) 329, 860, 1227, 1359
Zsp2I ATGCAT 2 cut(s) 274, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.