pycom11g19060

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003172
Physical Location & Seq
Reverse (-)
21339358 .. 21339984
627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGGAGAAAAGGTATGGCCTAATAAGGCAGGGCAGTGGAGTTTGGAGGGCCTTGAGAGATGGAGACTTTGAGGAAGATGATGTTTGGGAGGTTCTAAAAGATAGAAACAATACTTGTGGTAAAAATATGGCTTACGGATCCAAAAATTCCCATGTTTCTGTTCTAAGGCACCTCCCAACTGCCTCAAGAATGATTCCGAAACCCAGCAGCCACAATTACGGCAGTGGTAGCAGCAACACAACCAATCATGAAGCCAAATTTTTGCAGCAATCAGCACCTGTCAACATTCCTGATTGGTCCAAGGCTTACGGTCAGAAACCAAACAAGGCCTCCAAGAATGTTTCTTGGCAGAAATACGAGCGCGGTGGCGATGGTGATGAAGGTGGGGATGATGGCGGCAGAGATAGCGGTGATGATTATGAGGTGGTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGTATAATTCAAAGGTACCCCCTCATGAGTTTATTGCAAGGAGACTTGCAAGGAGTCAGATATCTTCTTTTTCTGTTTTTGAAGGGGCAGGGAGGACCCTCAAGGGGAGGGATCTTAGCAAAGTGAGGAATGCTATTTTGATAAAAACTGGTTTCCTTGAGTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

5.81

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 22 - 206 1.2e-36 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 472
AccB1I GGYRCC 2 cut(s) 168, 472
AccII CGCG 1 cut(s) 363
AciI CCGC 3 cut(s) 363, 396, 408
AclWI GGATC 3 cut(s) 132, 145, 576
AcsI RAATTY 2 cut(s) 145, 257
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 2 cut(s) 468, 539
Alw26I GTCTC 2 cut(s) 57, 493
AlwI GGATC 3 cut(s) 132, 145, 576
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 3 cut(s) 16, 48, 327
ApeKI GCWGC 3 cut(s) 207, 231, 265
ApoI RAATTY 2 cut(s) 145, 257
Asp718I GGTACC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 48, 297, 552
AsuHPI GGTGA 2 cut(s) 386, 422
AvaII GGWCC 2 cut(s) 297, 552
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 2 cut(s) 168, 472
BbvI GCAGC 3 cut(s) 219, 243, 277
BccI CCATC 3 cut(s) 53, 365, 386
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 57, 493
BisI GCNGC 4 cut(s) 208, 232, 266, 397
BlsI GCNGC 4 cut(s) 209, 233, 267, 398
Bme18I GGWCC 2 cut(s) 297, 552
BmgT120I GGNCC 3 cut(s) 48, 297, 552
BmiI GGNNCC 4 cut(s) 139, 170, 474, 554
BpuEI CTTGAG 3 cut(s) 73, 169, 542
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 5 cut(s) 26, 314, 344, 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 1 cut(s) 610
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 561
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 8 cut(s) 449, 452, 455, 458, 461, 464, 467, 470
BseXI GCAGC 3 cut(s) 219, 243, 277
BseYI CCCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 18, 50, 329
BshNI GGYRCC 2 cut(s) 168, 472
BslI CCNNNNNNNGG 1 cut(s) 561
BsmAI GTCTC 2 cut(s) 57, 493
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 3 cut(s) 18, 50, 329
Bsp143I GATC 2 cut(s) 137, 568
BspACI CCGC 3 cut(s) 363, 396, 408
BspANI GGCC 3 cut(s) 18, 50, 329
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 2 cut(s) 247, 481
BspLI GGNNCC 4 cut(s) 139, 170, 474, 554
BspPI GGATC 3 cut(s) 132, 145, 576
BspT107I GGYRCC 2 cut(s) 168, 472
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 137, 568
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 164, 572
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 2 cut(s) 140, 571
BstMAI GTCTC 2 cut(s) 57, 493
BstMBI GATC 2 cut(s) 137, 568
BstMWI GCNNNNNNNGC 2 cut(s) 228, 405
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 219, 243, 277
BstX2I RGATCY 2 cut(s) 137, 568
BstYI RGATCY 2 cut(s) 137, 568
BsuRI GGCC 3 cut(s) 18, 50, 329
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 394
BtsI GCAGTG 2 cut(s) 40, 229
BtsIMutI CAGTG 2 cut(s) 40, 229
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 2 cut(s) 247, 481
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 48, 297, 552
Csp6I GTAC 1 cut(s) 473
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 3 cut(s) 152, 248, 482
CviJI RGCY 7 cut(s) 18, 50, 131, 210, 254, 305, 329
CviKI_1 RGCY 7 cut(s) 18, 50, 131, 210, 254, 305, 329
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 164, 572
DpnI GATC 2 cut(s) 139, 570
DpnII GATC 2 cut(s) 137, 568
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 329
Eco32I GATATC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 297, 552
EcoO109I RGGNCCY 2 cut(s) 48, 552
EcoRV GATATC 1 cut(s) 519
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 155, 251, 485
FaiI YATR 7 cut(s) 15, 128, 153, 249, 420, 462, 483
FatI CATG 3 cut(s) 151, 247, 481
Fnu4HI GCNGC 4 cut(s) 208, 232, 266, 397
FokI GGATG 1 cut(s) 401
Fsp4HI GCNGC 4 cut(s) 208, 232, 266, 397
GlaI GCGC 1 cut(s) 362
GluI GCNGC 4 cut(s) 208, 232, 266, 397
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 3 cut(s) 18, 50, 329
HhaI GCGC 1 cut(s) 363
Hin1II CATG 3 cut(s) 155, 251, 485
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 3 cut(s) 193, 511, 617
HphI GGTGA 2 cut(s) 386, 422
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 198, 315, 516
Hpy188III TCNNGA 4 cut(s) 186, 248, 290, 482
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 374, 533
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 3 cut(s) 265, 494, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 405
HpyF3I CTNAG 2 cut(s) 164, 572
Hsp92II CATG 3 cut(s) 155, 251, 485
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 476
Kzo9I GATC 2 cut(s) 137, 568
LpnPI CCDG 6 cut(s) 14, 217, 291, 303, 531, 591
Lsp1109I GCAGC 3 cut(s) 219, 243, 277
MalI GATC 2 cut(s) 139, 570
MboI GATC 2 cut(s) 137, 568
MboII GAAGA 2 cut(s) 86, 513
MflI RGATCY 2 cut(s) 137, 568
MluCI AATT 4 cut(s) 145, 214, 257, 463
MlyI GAGTC 2 cut(s) 520, 626
Mva1269I GAATGC 1 cut(s) 592
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 228, 405
NdeII GATC 2 cut(s) 137, 568
NlaIII CATG 3 cut(s) 155, 251, 485
NlaIV GGNNCC 4 cut(s) 139, 170, 474, 554
PagI TCATGA 2 cut(s) 247, 481
PceI AGGCCT 1 cut(s) 329
PctI GAATGC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 209, 233, 267, 398
PleI GAGTC 2 cut(s) 519, 625
PpsI GAGTC 2 cut(s) 519, 625
PpuMI RGGWCCY 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 139, 170, 474, 554
PspPI GGNCC 3 cut(s) 48, 297, 552
PspPPI RGGWCCY 1 cut(s) 552
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 137, 568
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SatI GCNGC 4 cut(s) 208, 232, 266, 397
Sau3AI GATC 2 cut(s) 137, 568
Sau96I GGNCC 3 cut(s) 48, 297, 552
SchI GAGTC 2 cut(s) 520, 626
SetI ASST 7 cut(s) 14, 93, 174, 280, 385, 426, 474
SinI GGWCC 2 cut(s) 297, 552
SmlI CTYRAG 4 cut(s) 52, 184, 557, 614
SmoI CTYRAG 4 cut(s) 52, 184, 557, 614
Sse9I AATT 4 cut(s) 145, 214, 257, 463
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 3 cut(s) 363, 396, 408
StuI AGGCCT 1 cut(s) 329
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 311
TasI AATT 4 cut(s) 145, 214, 257, 463
TauI GCSGC 1 cut(s) 399
TfiI GAWTC 1 cut(s) 193
TscAI CASTG 2 cut(s) 40, 229
TseI GCWGC 3 cut(s) 207, 231, 265
TspDTI ATGAA 2 cut(s) 264, 393
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 40, 229
VpaK11BI GGWCC 2 cut(s) 297, 552
XapI RAATTY 2 cut(s) 145, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.