pycom11g23980

sodium metabolite cotransporter BASS1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
26949839 .. 26952803
2965 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
ATGCAGTCGTCACTCTCGTATCCCCATGGAATCACAGGCTTCTTCAAATTCCAACCGAACCCCATTTCAAACCAATCGCCACCGACATCCAAATCATTCCCCTTCTCTCACTACACCAACACATCTCTTTCCTCCTCTTCTTCCATTCAACTCGTTCTAAGATCCCACTGCAACTCGCAACCACAATTTCCCAGCAAACCCACTTGGCATCTACCCTCGAATCCCTTTTCACCGATACCAACGGCCAAGAACGTACGATTACTACTAGCTCCGCTTCACTGCTGCATTTCGTCGAACAGCTCCAACGCAAATGCGACTAGGAGTTTCAGGGATTGGGTTGAACTGGTTGGTGAGGCTGTGTCGACTGCATTTCCGATTTGGGTTGCTTTGGGGTGCCTGTTGGGGCTCCTCAAGCCGAGCTCCTTCAATTGGGTCACACCCAACTACAACATCTTTGGTTTAACACTGACCATGCTCGGCATGGGTATGACCCTCACTTTTGCCGACCTTCGTGGCGCCTTGGCTATGCCCAAGGAGTTGCTTGCTGGCTTTGTTCTTCAGTACTCGGTGATGCCTTTATCAGGATATTTGGTGAGCAAGCTTTTGAATTTGCCATCGTATTATGCAGCTGGTTTGATATTGGTTGGTTGCTGCCCAGGTGGAACAGCAAGTAACATTGTAACTTATATTGCACGTGGAAATGTGGCACTTTCGGTTTTAATGACAGCAGCAAGCACTTTATCAGCCGTGATCATGACCCCATTTCTCACAGCTAAACTTGCCGGCCAATATGTTGCAGTAGATGCAGCTGGGCTCTTATTCTCAACACTGCAGGTTGTGCTTCTCCCTGTTTTGGCGGGTGCATTTCTGAATCAGTATTTCCAAGGCCTGGTTAAATTCGTCTCCCCCGTGATGCCACCCATTGCTGTAGCAACTGTAGGTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCATCTGCAATCCTTACGTCTGGTAAACAAGTGGTGCTTGCTTCCGCTCTTCTTCATGCAAGTGGATTTTTCTTTGGATACATCTTTTCAAGGATGCTTGGGCTTGATGTCACATCATCAAGGACTATCTCCATCGAGGTTGGCATGCAGAATTCGGTGCTCGGAATTGTTCTAGCCGGTCAGCACTTCGGAAACCCTCTAACTGCAGTACCATGTGCTGTTTCCAGCGTTTCTCATTCAATCTTGGGTAGTGCCTTGGCAGGATTCTGGAGACAGACCGTGCCAACCCAGAAGCAAGATTGA

Protein Analysis

425

Amino Acids

44.84

Weight (kDa)

9.39

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 151 - 415 1.5e-13 SBF-like CPA transporter family (DUF4137)
SBF PF01758 152 - 328 1.3e-40 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 823
AccB1I GGYRCC 2 cut(s) 393, 515
AccB7I CCANNNNNTGG 1 cut(s) 889
AccBSI CCGCTC 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 362
AciI CCGC 3 cut(s) 272, 857, 1017
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 2 cut(s) 243, 784
AcsI RAATTY 4 cut(s) 47, 607, 896, 1123
AcuI CTGAAG 1 cut(s) 542
AcvI CACGTG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 516
AfaI GTAC 3 cut(s) 255, 563, 1182
AfiI CCNNNNNNNGG 4 cut(s) 429, 581, 853, 889
AgsI TTSAA 8 cut(s) 46, 69, 149, 341, 427, 607, 1062, 1212
AjnI CCWGG 2 cut(s) 655, 888
AluBI AGCT 7 cut(s) 269, 300, 420, 601, 629, 773, 809
AluI AGCT 7 cut(s) 269, 300, 420, 601, 629, 773, 809
Alw21I GWGCWC 2 cut(s) 422, 1134
Alw26I GTCTC 2 cut(s) 907, 1237
AlwI GGATC 1 cut(s) 156
AoxI GGCC 3 cut(s) 243, 784, 886
ApeKI GCWGC 5 cut(s) 282, 626, 651, 728, 806
ApoI RAATTY 4 cut(s) 47, 607, 896, 1123
AspLEI GCGC 1 cut(s) 518
AsuHPI GGTGA 4 cut(s) 222, 362, 580, 604
BaeI ACNNNNGTAYC 3 cut(s) 35, 1164, 1197
BanI GGYRCC 2 cut(s) 393, 515
BanII GRGCYC 3 cut(s) 408, 422, 816
BbrPI CACGTG 1 cut(s) 695
Bbv12I GWGCWC 2 cut(s) 422, 1134
BbvI GCAGC 5 cut(s) 269, 638, 638, 740, 818
BccI CCATC 2 cut(s) 622, 1112
BceAI ACGGC 2 cut(s) 258, 731
BciT130I CCWGG 2 cut(s) 657, 890
BciVI GTATCC 2 cut(s) 30, 1043
BclI TGATCA 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 907, 1237
BfaI CTAG 3 cut(s) 266, 318, 1145
BfmI CTRYAG 4 cut(s) 830, 927, 936, 1176
BfoI RGCGCY 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 823
BfuI GTATCC 2 cut(s) 30, 1043
BisI GCNGC 5 cut(s) 283, 627, 652, 729, 807
BlsI GCNGC 5 cut(s) 284, 628, 653, 730, 808
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 2 cut(s) 657, 890
BmiI GGNNCC 3 cut(s) 395, 407, 517
BmrFI CCNGG 2 cut(s) 657, 890
BmsI GCATC 5 cut(s) 217, 561, 793, 903, 1056
BpmI CTGGAG 1 cut(s) 1261
BpuEI CTTGAG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 516
BsaJI CCNNGG 6 cut(s) 25, 519, 531, 655, 883, 1227
Bsc4I CCNNNNNNNGG 4 cut(s) 429, 581, 853, 889
Bse118I RCCGGY 2 cut(s) 782, 1148
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 921
BseBI CCWGG 2 cut(s) 657, 890
BseDI CCNNGG 6 cut(s) 25, 519, 531, 655, 883, 1227
BseGI GGATG 2 cut(s) 86, 1071
BseLI CCNNNNNNNGG 4 cut(s) 429, 581, 853, 889
BseMI GCAATG 1 cut(s) 921
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 124, 398
BseXI GCAGC 5 cut(s) 269, 638, 638, 740, 818
BseYI CCCAGC 2 cut(s) 191, 809
BshFI GGCC 3 cut(s) 245, 786, 888
BshNI GGYRCC 2 cut(s) 393, 515
BsiHKAI GWGCWC 2 cut(s) 422, 1134
BsiSI CCGG 2 cut(s) 783, 1149
BsiWI CGTACG 1 cut(s) 253
BslI CCNNNNNNNGG 4 cut(s) 429, 581, 853, 889
BsmAI GTCTC 2 cut(s) 907, 1237
BsmBI CGTCTC 1 cut(s) 907
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 245, 786, 888
Bsp1286I GDGCHC 4 cut(s) 408, 422, 816, 1134
Bsp143I GATC 2 cut(s) 161, 750
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 3 cut(s) 272, 857, 1017
BspANI GGCC 3 cut(s) 245, 786, 888
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 395, 407, 517
BspMAI CTGCAG 2 cut(s) 834, 1180
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 1 cut(s) 156
BspQI GCTCTTC 1 cut(s) 1026
BspT107I GGYRCC 2 cut(s) 393, 515
BsrBI CCGCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 2 cut(s) 782, 1148
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 2 cut(s) 782, 1148
BssECI CCNNGG 6 cut(s) 25, 519, 531, 655, 883, 1227
BssMI GATC 2 cut(s) 161, 750
BssNI GRCGYC 1 cut(s) 516
BssT1I CCWWGG 5 cut(s) 25, 519, 531, 883, 1227
Bst2UI CCWGG 2 cut(s) 657, 890
Bst4CI ACNGT 2 cut(s) 937, 1252
Bst6I CTCTTC 2 cut(s) 142, 1026
BstACI GRCGYC 1 cut(s) 516
BstAPI GCANNNNNTGC 2 cut(s) 803, 838
BstBAI YACGTR 1 cut(s) 695
BstC8I GCNNGC 7 cut(s) 543, 547, 599, 733, 784, 1011, 1118
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 579
BstF5I GGATG 2 cut(s) 86, 1071
BstH2I RGCGCY 1 cut(s) 519
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 2 cut(s) 164, 753
BstMAI GTCTC 2 cut(s) 907, 1237
BstMBI GATC 2 cut(s) 161, 750
BstMWI GCNNNNNNNGC 4 cut(s) 412, 779, 803, 838
BstNI CCWGG 2 cut(s) 657, 890
BstNSI RCATGY 1 cut(s) 1120
BstSCI CCNGG 2 cut(s) 655, 888
BstSFI CTRYAG 4 cut(s) 830, 927, 936, 1176
BstV1I GCAGC 5 cut(s) 269, 638, 638, 740, 818
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 2 cut(s) 30, 1043
BsuRI GGCC 3 cut(s) 245, 786, 888
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 86, 1071
BtsI GCAGTG 3 cut(s) 166, 277, 827
BtsIMutI CAGTG 4 cut(s) 166, 277, 464, 827
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 7 cut(s) 543, 547, 599, 733, 784, 1011, 1118
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 2 cut(s) 782, 1148
Csp6I GTAC 3 cut(s) 254, 562, 1181
CviAII CATG 7 cut(s) 26, 472, 481, 754, 1028, 1117, 1185
CviQI GTAC 3 cut(s) 254, 562, 1181
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 1 cut(s) 517
DpnI GATC 2 cut(s) 163, 752
DpnII GATC 2 cut(s) 161, 750
EaeI YGGCCR 2 cut(s) 243, 784
Eam1104I CTCTTC 2 cut(s) 142, 1026
EarI CTCTTC 2 cut(s) 142, 1026
Ecl136II GAGCTC 1 cut(s) 420
Eco130I CCWWGG 5 cut(s) 25, 519, 531, 883, 1227
Eco147I AGGCCT 1 cut(s) 888
Eco24I GRGCYC 3 cut(s) 408, 422, 816
Eco53kI GAGCTC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 542
Eco72I CACGTG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 1123
EcoRII CCWGG 2 cut(s) 655, 888
EcoT14I CCWWGG 5 cut(s) 25, 519, 531, 883, 1227
EcoT38I GRGCYC 3 cut(s) 408, 422, 816
EgeI GGCGCC 1 cut(s) 517
EheI GGCGCC 1 cut(s) 517
ErhI CCWWGG 5 cut(s) 25, 519, 531, 883, 1227
Esp3I CGTCTC 1 cut(s) 907
FaeI CATG 7 cut(s) 29, 475, 484, 757, 1031, 1120, 1188
FalI AAGNNNNNCTT 2 cut(s) 993, 1025
FatI CATG 7 cut(s) 25, 471, 480, 753, 1027, 1116, 1184
FauI CCCGC 1 cut(s) 850
FbaI TGATCA 1 cut(s) 750
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 283, 627, 652, 729, 807
FokI GGATG 2 cut(s) 73, 1078
FriOI GRGCYC 3 cut(s) 408, 422, 816
Fsp4HI GCNGC 5 cut(s) 283, 627, 652, 729, 807
FspBI CTAG 3 cut(s) 266, 318, 1145
GlaI GCGC 1 cut(s) 517
GluI GCNGC 5 cut(s) 283, 627, 652, 729, 807
GsaI CCCAGC 2 cut(s) 195, 813
GsuI CTGGAG 1 cut(s) 1261
HaeII RGCGCY 1 cut(s) 519
HaeIII GGCC 3 cut(s) 245, 786, 888
HapII CCGG 2 cut(s) 783, 1149
HhaI GCGC 1 cut(s) 518
Hin1I GRCGYC 1 cut(s) 516
Hin1II CATG 7 cut(s) 29, 475, 484, 757, 1031, 1120, 1188
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 30, 220, 871, 1236
HpaII CCGG 2 cut(s) 783, 1149
HphI GGTGA 4 cut(s) 222, 362, 580, 604
Hpy166II GTNNAC 2 cut(s) 363, 998
Hpy188I TCNGA 4 cut(s) 375, 870, 1136, 1163
Hpy188III TCNNGA 3 cut(s) 582, 754, 1240
Hpy8I GTNNAC 2 cut(s) 363, 998
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 112, 433, 518
HpyCH4III ACNGT 2 cut(s) 937, 1252
HpyCH4IV ACGT 3 cut(s) 252, 694, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 412, 779, 803, 838
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 3 cut(s) 252, 694, 989
Hsp92I GRCGYC 1 cut(s) 516
Hsp92II CATG 7 cut(s) 29, 475, 484, 757, 1031, 1120, 1188
HspAI GCGC 1 cut(s) 516
KasI GGCGCC 1 cut(s) 515
KroI GCCGGC 1 cut(s) 782
KroNI GCCGGC 1 cut(s) 784
Ksp22I TGATCA 1 cut(s) 750
Kzo9I GATC 2 cut(s) 161, 750
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 4 cut(s) 274, 305, 411, 425
Lsp1109I GCAGC 5 cut(s) 269, 638, 638, 740, 818
LweI GCATC 5 cut(s) 217, 561, 793, 903, 1056
MaeI CTAG 3 cut(s) 266, 318, 1145
MaeII ACGT 3 cut(s) 252, 694, 989
MaeIII GTNAC 5 cut(s) 9, 433, 671, 679, 1081
MalI GATC 2 cut(s) 163, 752
MbiI CCGCTC 1 cut(s) 1019
MboI GATC 2 cut(s) 161, 750
MboII GAAGA 6 cut(s) 34, 129, 132, 548, 1013, 1016
MfeI CAATTG 2 cut(s) 427, 960
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 4 cut(s) 408, 422, 816, 1134
MluCI AATT 8 cut(s) 47, 185, 427, 607, 896, 960, 1123, 1137
Mly113I GGCGCC 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 76, 327
MnlI CCTC 8 cut(s) 142, 145, 226, 346, 419, 503, 1102, 1179
MroNI GCCGGC 1 cut(s) 782
MseI TTAA 3 cut(s) 461, 719, 894
MslI CAYNNNNRTG 2 cut(s) 485, 1032
MspA1I CMGCKG 2 cut(s) 629, 809
MspI CCGG 2 cut(s) 783, 1149
MspR9I CCNGG 2 cut(s) 657, 890
MunI CAATTG 2 cut(s) 427, 960
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 2 cut(s) 657, 890
MwoI GCNNNNNNNGC 4 cut(s) 412, 779, 803, 838
NaeI GCCGGC 1 cut(s) 784
NarI GGCGCC 1 cut(s) 516
NcoI CCATGG 1 cut(s) 25
NdeII GATC 2 cut(s) 161, 750
NgoMIV GCCGGC 1 cut(s) 782
NlaIII CATG 7 cut(s) 29, 475, 484, 757, 1031, 1120, 1188
NlaIV GGNNCC 3 cut(s) 395, 407, 517
NmeAIII GCCGAG 2 cut(s) 441, 456
NmuCI GTSAC 3 cut(s) 9, 433, 1081
NspI RCATGY 1 cut(s) 1120
PaeI GCATGC 1 cut(s) 1120
PagI TCATGA 1 cut(s) 753
PceI AGGCCT 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 1026
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 906
PctI GAATGC 1 cut(s) 961
PdiI GCCGGC 1 cut(s) 784
PfeI GAWTC 4 cut(s) 30, 220, 871, 1236
Pfl23II CGTACG 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 889
PkrI GCNGC 5 cut(s) 284, 628, 653, 730, 808
PluTI GGCGCC 1 cut(s) 519
PmaCI CACGTG 1 cut(s) 695
PmlI CACGTG 1 cut(s) 695
Ppu21I YACGTR 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 655, 888
PspCI CACGTG 1 cut(s) 695
PspFI CCCAGC 2 cut(s) 191, 809
PspGI CCWGG 2 cut(s) 655, 888
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 395, 407, 517
PstI CTGCAG 2 cut(s) 834, 1180
PsuI RGATCY 1 cut(s) 161
PvuII CAGCTG 2 cut(s) 629, 809
RsaI GTAC 3 cut(s) 255, 563, 1182
RsaNI GTAC 3 cut(s) 254, 562, 1181
RseI CAYNNNNRTG 2 cut(s) 485, 1032
SacI GAGCTC 1 cut(s) 422
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 461, 719, 894
SatI GCNGC 5 cut(s) 283, 627, 652, 729, 807
Sau3AI GATC 2 cut(s) 161, 750
ScaI AGTACT 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 657, 890
SduI GDGCHC 4 cut(s) 408, 422, 816, 1134
SfaNI GCATC 5 cut(s) 217, 561, 793, 903, 1056
SfcI CTRYAG 4 cut(s) 830, 927, 936, 1176
SfoI GGCGCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 485, 1032
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SphI GCATGC 1 cut(s) 1120
Sse9I AATT 8 cut(s) 47, 185, 427, 607, 896, 960, 1123, 1137
SseBI AGGCCT 1 cut(s) 888
SsiI CCGC 3 cut(s) 272, 857, 1017
SspDI GGCGCC 1 cut(s) 515
SspMI CTAG 3 cut(s) 266, 318, 1145
SstI GAGCTC 1 cut(s) 422
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 2 cut(s) 655, 888
StyI CCWWGG 5 cut(s) 25, 519, 531, 883, 1227
TaaI ACNGT 2 cut(s) 937, 1252
TaiI ACGT 3 cut(s) 255, 697, 992
TaqI TCGA 4 cut(s) 218, 293, 362, 1107
TasI AATT 8 cut(s) 47, 185, 427, 607, 896, 960, 1123, 1137
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 4 cut(s) 30, 220, 871, 1236
Tru1I TTAA 3 cut(s) 461, 719, 894
Tru9I TTAA 3 cut(s) 461, 719, 894
TscAI CASTG 4 cut(s) 173, 284, 471, 834
TseFI GTSAC 3 cut(s) 9, 433, 1081
TseI GCWGC 5 cut(s) 282, 626, 651, 728, 806
Tsp45I GTSAC 3 cut(s) 9, 433, 1081
TspDTI ATGAA 2 cut(s) 963, 1016
TspRI CASTG 4 cut(s) 173, 284, 471, 834
Van91I CCANNNNNTGG 1 cut(s) 889
XagI CCTNNNNNAGG 1 cut(s) 579
XapI RAATTY 4 cut(s) 47, 607, 896, 1123
XceI RCATGY 1 cut(s) 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 266, 318, 1145
ZrmI AGTACT 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.