Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006339

Physical Location & Seq

Genomic Coordinates Forward (+)

27023841 .. 27024737

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACCCCATTTCTCACAGCTAAACTTGCCGGCCAATATGTTGCAGTAGATGCAGTTGTACTGCTCCCTGTTTTGGCGGGTGCATTTCTGAATCAGTATTTCCAAGGCCCGGTTAAATTCGCCTCCCCCGTGATGCCACCCATTGCTGTAGCAACTGTAGGTGTTCTTTGTGGGAATGCAATTGCCCAGAGTTCATCTGCAATCCTTACGTCTGGTAAACAAGTGGTACTTGCTTCCGCTCTTCTTCATGCAAGTGGATTTTTCTTTGGTTACATATTTTCAAGGATGCTTGGGCTCGATGTCACATCATCAAGGACTATCTCCATCGAGGTTGGCATGCTGGTAAGCATCATTGGGTTGTTTTTTCTTCTTCTGGATTTCTTAAAAGAGAAATCCATGTCAATTTGTATGCGTTATCAGTTGTCTGCGAGTGTTGTTATCGGCTCTTCTATGTTTCAGAATTCAGTGCTCAGAATTGTTCTAGCCGGTCAGCACTTCGGAAACCCCCTAACTGCGGTACCATATGCTGTTTCCAGTGTTTGTCATTCAATCTTGGGTAGTGCCTTGGCAGGATTCTGGAGACAGATCGTGCCAACCCAGAAGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF

Protein Analysis

204

Amino Acids

21.53

Weight (kDa)

9.33

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78560
fragaria_vesca	FvH4_3g17590 FvH4_3g17590 FvH4_3g17590 FvH4_3g17590
malus_domestica	MD03G1250900.v1.1 MD03G1251000.v1.1 MD03G1251100.v1.1 MD03G1251200.v1.1 MD11G1271200.v1.1
prunus_persica	Prupe.4G155400_v2.0.a1
pyrus_communis	pycom03g19860 pycom11g23980 pycom11g24010 pycom11g24030
rosa_chinensis	RchiOBHm_Chr5g0029301
rosa_laevigata	RLG00000033151
rosa_multiflora	Rmu_ssc0000405.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050710
rosa_rugosa	Rorug05G0112900
rosa_samantha	Rh2BG192800 Rh5AG205100 Rh5AG205200 Rh5BG203700 Rh5CG225100 Rh5DG207300
rosa_wichuraiana	Rw5G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	239
AciI	CCGC	3 cut(s)	77, 237, 515
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	116, 460
AfaI	GTAC	3 cut(s)	60, 228, 519
AfiI	CCNNNNNNNGG	3 cut(s)	73, 109, 514
AgsI	TTSAA	2 cut(s)	282, 549
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	574
AoxI	GGCC	2 cut(s)	31, 106
ApoI	RAATTY	2 cut(s)	116, 460
Asp718I	GGTACC	1 cut(s)	517
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	471
BccI	CCATC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	2 cut(s)	147, 156
Bme1390I	CCNGG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	4 cut(s)	40, 123, 276, 357
BpmI	CTGGAG	1 cut(s)	598
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	103, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 109, 514
Bse118I	RCCGGY	2 cut(s)	29, 485
Bse1I	ACTGG	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	103, 564
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	73, 109, 514
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	33, 108
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	30, 110, 486
BslI	CCNNNNNNNGG	3 cut(s)	73, 109, 514
BsmAI	GTCTC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	33, 108
Bsp1286I	GDGCHC	2 cut(s)	297, 471
Bsp143I	GATC	1 cut(s)	585
BspACI	CCGC	3 cut(s)	77, 237, 515
BspANI	GGCC	2 cut(s)	33, 108
BspCNI	CTCAG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	519
BspQI	GCTCTTC	2 cut(s)	246, 451
BspT107I	GGYRCC	1 cut(s)	517
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	2 cut(s)	29, 485
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	2 cut(s)	29, 485
BssECI	CCNNGG	2 cut(s)	103, 564
BssMI	GATC	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	103, 564
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	246, 451
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	31, 338
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	588
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	1 cut(s)	585
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 50
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	2 cut(s)	147, 156
BsuRI	GGCC	2 cut(s)	33, 108
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	471, 541
Cac8I	GCNNGC	2 cut(s)	31, 338
Cfr10I	RCCGGY	2 cut(s)	29, 485
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	59, 227, 518
CviAII	CATG	3 cut(s)	248, 337, 397
CviJI	RGCY	6 cut(s)	20, 33, 108, 295, 444, 485
CviKI_1	RGCY	6 cut(s)	20, 33, 108, 295, 444, 485
CviQI	GTAC	3 cut(s)	59, 227, 518
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	587
DpnII	GATC	1 cut(s)	585
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	246, 451
EarI	CTCTTC	2 cut(s)	246, 451
Eco130I	CCWWGG	2 cut(s)	103, 564
Eco24I	GRGCYC	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	103, 564
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	103, 564
FaeI	CATG	3 cut(s)	251, 340, 400
FaiI	YATR	9 cut(s)	39, 249, 275, 338, 398, 410, 452, 523, 525
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	3 cut(s)	247, 336, 396
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	523
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	598
HaeIII	GGCC	2 cut(s)	33, 108
HapII	CCGG	3 cut(s)	30, 110, 486
Hin1II	CATG	3 cut(s)	251, 340, 400
HinfI	GANTC	2 cut(s)	91, 573
HpaII	CCGG	3 cut(s)	30, 110, 486
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	90, 459, 473, 500
Hpy188III	TCNNGA	2 cut(s)	374, 577
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	6 cut(s)	44, 53, 83, 179, 200, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 50
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	251, 340, 400
KpnI	GGTACC	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	585
LguI	GCTCTTC	2 cut(s)	246, 451
LmnI	GCTCC	1 cut(s)	69
LweI	GCATC	4 cut(s)	40, 123, 276, 357
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	269, 301
MalI	GATC	1 cut(s)	587
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	1 cut(s)	585
MboII	GAAGA	5 cut(s)	233, 236, 359, 362, 438
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	297, 471
MluCI	AATT	5 cut(s)	116, 180, 402, 460, 474
MnlI	CCTC	2 cut(s)	133, 322
MroNI	GCCGGC	1 cut(s)	29
MseI	TTAA	2 cut(s)	114, 383
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	3 cut(s)	30, 110, 486
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	26, 50
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	585
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	3 cut(s)	251, 340, 400
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	340
PaeI	GCATGC	1 cut(s)	340
PciSI	GCTCTTC	2 cut(s)	246, 451
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	91, 573
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	107
RsaI	GTAC	3 cut(s)	60, 228, 519
RsaNI	GTAC	3 cut(s)	59, 227, 518
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	2 cut(s)	246, 451
SaqAI	TTAA	2 cut(s)	114, 383
Sau3AI	GATC	1 cut(s)	585
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	297, 471
SetI	ASST	4 cut(s)	22, 163, 212, 333
SfaNI	GCATC	4 cut(s)	40, 123, 276, 357
SfcI	CTRYAG	2 cut(s)	147, 156
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	340
Sse9I	AATT	5 cut(s)	116, 180, 402, 460, 474
SsiI	CCGC	3 cut(s)	77, 237, 515
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	103, 564
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	2 cut(s)	297, 327
TasI	AATT	5 cut(s)	116, 180, 402, 460, 474
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	91, 573
Tru1I	TTAA	2 cut(s)	114, 383
Tru9I	TTAA	2 cut(s)	114, 383
TscAI	CASTG	2 cut(s)	471, 541
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	183, 236
TspRI	CASTG	2 cut(s)	471, 541
XapI	RAATTY	2 cut(s)	116, 460
XceI	RCATGY	1 cut(s)	340
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.