Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007540

Physical Location & Seq

Genomic Coordinates Reverse (-)

818756 .. 819184

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGACCCGCAAGCTGATCGTGGAAGTGTGCAACGCCAAGAACCTAATGCCGAAAGACGGACAGGGGACGGCGAGCGCCTATGCGATCGTCGACTACGACGGGCAGCGGCGGCGGACGAAGACGAAGCAGCGAGATCTCAACCCCGAGTGGGACGAGAAGCTAGAGTTTCTTGTCAACGACAGCGAATCCATGGCCACCGAGATGCTGGAGATCAACATCTACAACGACAAGAAGGCCGCCAAGCGCAGCACTTTTCTCGGAAAAGTAAAGATTCCGGGAAATACTTTTGTGAAATCTGATGCGGCGGCGCTGGTTTACTTTCCGCTGGAGAAGCGGAGCGTGTTTTCTCAGATCAAGGGCGAGGTCGGATTGAAGATTTATTACATTGACGAACGATCCTCCCGCGCCCCCACCGGCAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006836 GO:0006887 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008021 GO:0008150 GO:0009987 GO:0010646 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016079 GO:0016082 GO:0016192 GO:0017075 GO:0017156 GO:0019905 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030133 GO:0030424 GO:0030658 GO:0030659 GO:0030672 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0032940 GO:0033267 GO:0034622 GO:0042995 GO:0043005 GO:0043195 GO:0043226 GO:0043227 GO:0043229 GO:0043679 GO:0043933 GO:0044085 GO:0044306 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0045055 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048489 GO:0048786 GO:0050789 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0065003 GO:0065007 GO:0065008 GO:0070382 GO:0071840 GO:0071944 GO:0097458 GO:0097479 GO:0097480 GO:0097708 GO:0098588 GO:0098793 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099501 GO:0099503 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

143

Amino Acids

16.04

Weight (kDa)

9.41

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	5 - 102	3.5e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007540)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g00960 pycom15g36380
rosa_chinensis	RchiOBHm_Chr3g0456221 RchiOBHm_Chr4g0400961
rosa_multiflora	Rmu_sc0002026.1_g000018 Rmu_sc0002170.1_g000056 Rmu_sc0002351.1_g000029 Rmu_sc0012757.1_g000004 Rmu_sc0014856.1_g000002 Rmu_sc0040516.1_g000001 Rmu_sc0040517.1_g000001 Rmu_ssc0000162.1_g000020
rosa_roxburghii	Rroxscaffold_1G00044730 Rroxscaffold_3G00230760
rosa_rugosa	Rorug04G0155200
rosa_samantha	Rh4AG104900 Rh4CG113400 Rh5BG302900 Rh5CG210400 Rh5CG352600 Rh5DG311600 Rh6AG346300 Rh6CG066900 Rh6CG360200 Rh7BG027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	408
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	59, 151
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	2 cut(s)	16, 163
AluI	AGCT	2 cut(s)	16, 163
AlwI	GGATC	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	195, 237
ApeKI	GCWGC	3 cut(s)	106, 130, 249
AspLEI	GCGC	4 cut(s)	80, 249, 313, 410
AsuC2I	CCSGG	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	197
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	118, 142, 261
BceAI	ACGGC	1 cut(s)	87
BcgI	CGANNNNNNTGC	3 cut(s)	35, 241, 275
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	1 cut(s)	164
BfoI	RGCGCY	2 cut(s)	81, 314
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	8 cut(s)	107, 110, 113, 131, 240, 250, 306, 309
BlsI	GCNGC	8 cut(s)	108, 111, 114, 132, 241, 251, 307, 310
Bme1390I	CCNGG	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	195, 292
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	230, 350
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 151
Bse118I	RCCGGY	1 cut(s)	416
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	59, 151
BseMII	CTCAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	118, 142, 261
Bsh1236I	CGCG	1 cut(s)	408
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	197, 239
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	278, 417
BslFI	GGGAC	2 cut(s)	82, 167
BslI	CCNNNNNNNGG	2 cut(s)	59, 151
BsmFI	GGGAC	2 cut(s)	82, 167
BsnI	GGCC	2 cut(s)	197, 239
BsoBI	CYCGRG	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	2 cut(s)	197, 239
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	408
BspPI	GGATC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
BssT1I	CCWWGG	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	14, 76
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	408
BstH2I	RGCGCY	2 cut(s)	81, 314
BstHHI	GCGC	4 cut(s)	80, 249, 313, 410
BstKTI	GATC	6 cut(s)	21, 90, 139, 216, 357, 401
BstMBI	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 334
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	118, 142, 261
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	197, 239
BtgI	CCRYGG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	14, 76
CfoI	GCGC	4 cut(s)	80, 249, 313, 410
Cfr10I	RCCGGY	1 cut(s)	416
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	4 cut(s)	16, 163, 197, 239
CviKI_1	RGCY	4 cut(s)	16, 163, 197, 239
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	6 cut(s)	20, 89, 138, 215, 356, 400
DpnII	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
EaeI	YGGCCR	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	84, 194
FaqI	GGGAC	2 cut(s)	82, 167
FatI	CATG	1 cut(s)	192
FauI	CCCGC	2 cut(s)	17, 413
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	8 cut(s)	107, 110, 113, 131, 240, 250, 306, 309
Fsp4HI	GCNGC	8 cut(s)	107, 110, 113, 131, 240, 250, 306, 309
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	4 cut(s)	79, 248, 312, 409
GluI	GCNGC	8 cut(s)	107, 110, 113, 131, 240, 250, 306, 309
GsuI	CTGGAG	2 cut(s)	230, 350
HaeII	RGCGCY	2 cut(s)	81, 314
HaeIII	GGCC	2 cut(s)	197, 239
HapII	CCGG	2 cut(s)	278, 417
HhaI	GCGC	4 cut(s)	80, 249, 313, 410
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	4 cut(s)	78, 247, 311, 408
HinP1I	GCGC	4 cut(s)	78, 247, 311, 408
HincII	GTYRAC	2 cut(s)	94, 178
HindII	GTYRAC	2 cut(s)	94, 178
HinfI	GANTC	2 cut(s)	188, 274
HpaII	CCGG	2 cut(s)	278, 417
Hpy166II	GTNNAC	3 cut(s)	94, 178, 319
Hpy188I	TCNGA	4 cut(s)	263, 301, 354, 371
Hpy8I	GTNNAC	3 cut(s)	94, 178, 319
Hpy99I	CGWCG	2 cut(s)	95, 104
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 334
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	4 cut(s)	78, 247, 311, 408
Kzo9I	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	5 cut(s)	50, 194, 291, 299, 314
Lsp1109I	GCAGC	3 cut(s)	118, 142, 261
LweI	GCATC	2 cut(s)	195, 292
MaeI	CTAG	1 cut(s)	164
MalI	GATC	6 cut(s)	20, 89, 138, 215, 356, 400
MboI	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
MboII	GAAGA	2 cut(s)	133, 388
MflI	RGATCY	1 cut(s)	136
MlsI	TGGCCA	1 cut(s)	197
MluNI	TGGCCA	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	3 cut(s)	358, 412, 416
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	2 cut(s)	109, 328
MspI	CCGG	2 cut(s)	278, 417
MspR9I	CCNGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	112, 334
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
NlaIII	CATG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	188, 274
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	8 cut(s)	108, 111, 114, 132, 241, 251, 307, 310
Ple19I	CGATCG	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	203
SalI	GTCGAC	1 cut(s)	92
SatI	GCNGC	8 cut(s)	107, 110, 113, 131, 240, 250, 306, 309
Sau3AI	GATC	6 cut(s)	18, 87, 136, 213, 354, 398
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	4 cut(s)	18, 48, 165, 369
SfaNI	GCATC	2 cut(s)	195, 292
SmiMI	CAYNNNNRTG	1 cut(s)	203
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	1 cut(s)	93
TauI	GCSGC	5 cut(s)	112, 115, 242, 308, 311
TfiI	GAWTC	2 cut(s)	188, 274
TseI	GCWGC	3 cut(s)	106, 130, 249
TspGWI	ACGGA	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.